Wall clock time and date at job start Mon Mar 30 2020 06:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37435 * 123.39024 * 2 1 4 4 C 1.33856 * 115.13319 * 180.32689 * 3 2 1 5 5 S 1.70611 * 111.01075 * 359.72062 * 4 3 2 6 6 C 1.37039 * 123.39236 * 179.80787 * 2 1 3 7 7 C 1.41588 * 125.47645 * 359.97438 * 6 2 1 8 8 C 1.35651 * 120.00222 * 227.73171 * 7 6 2 9 9 C 1.41474 * 119.99852 * 7.62982 * 8 7 6 10 10 O 1.21792 * 119.99896 * 5.80045 * 9 8 7 11 11 N 1.34773 * 120.00324 * 186.07640 * 9 8 7 12 12 C 1.46496 * 119.99677 * 359.72614 * 11 9 8 13 13 C 1.46494 * 120.00257 * 179.72744 * 11 9 8 14 14 C 1.50702 * 109.47514 * 90.00085 * 13 11 9 15 15 H 1.08004 * 119.99608 * 0.02562 * 14 13 11 16 16 C 1.37871 * 120.00188 * 180.02562 * 14 13 11 17 17 N 1.31516 * 120.00014 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00128 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47297 * 89.99762 * 18 16 14 20 20 H 1.48501 * 109.47203 * 209.99989 * 18 16 14 21 21 H 1.48505 * 109.46881 * 329.99851 * 18 16 14 22 22 H 1.08998 * 109.47273 * 270.18082 * 1 2 3 23 23 H 1.08992 * 109.47262 * 30.19155 * 1 2 3 24 24 H 1.09004 * 109.46589 * 150.19080 * 1 2 3 25 25 H 1.08005 * 122.43685 * 0.04643 * 3 2 1 26 26 H 1.07993 * 124.49394 * 179.76097 * 4 3 2 27 27 H 1.08004 * 119.99821 * 47.71870 * 7 6 2 28 28 H 1.07998 * 120.00424 * 187.63707 * 8 7 6 29 29 H 1.08997 * 109.47338 * 90.00018 * 12 11 9 30 30 H 1.09005 * 109.47511 * 210.00059 * 12 11 9 31 31 H 1.09000 * 109.47345 * 330.00228 * 12 11 9 32 32 H 1.09009 * 109.47460 * 209.99959 * 13 11 9 33 33 H 1.09000 * 109.47297 * 329.99915 * 13 11 9 34 34 H 0.97004 * 119.99693 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2634 1.1475 0.0000 4 6 3.5880 0.9553 -0.0069 5 16 3.9647 -0.7087 -0.0062 6 6 2.2612 -1.1442 0.0038 7 6 1.7508 -2.4648 0.0088 8 6 2.2436 -3.3792 0.8812 9 6 3.1486 -2.9769 1.8915 10 8 3.4037 -1.7960 2.0455 11 7 3.7327 -3.9008 2.6799 12 6 3.4259 -5.3213 2.4947 13 6 4.6743 -3.4847 3.7221 14 6 3.9245 -3.2309 5.0045 15 1 2.8536 -3.3665 5.0397 16 6 4.6056 -2.8257 6.1327 17 7 5.9097 -2.6611 6.0899 18 14 3.6760 -2.5105 7.7220 19 1 3.6107 -3.7647 8.5144 20 1 4.3792 -1.4647 8.5076 21 1 2.2992 -2.0514 7.4075 22 1 -0.3634 0.0032 1.0276 23 1 -0.3633 0.8882 -0.5168 24 1 -0.3632 -0.8917 -0.5109 25 1 1.8211 2.1329 0.0007 26 1 4.3211 1.7483 -0.0116 27 1 0.9689 -2.7441 -0.6820 28 1 1.9452 -4.4143 0.8045 29 1 4.1257 -5.7540 1.7797 30 1 3.5148 -5.8398 3.4494 31 1 2.4089 -5.4271 2.1171 32 1 5.4110 -4.2722 3.8818 33 1 5.1808 -2.5712 3.4105 34 1 6.3889 -2.3763 6.8838 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701277200.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:02 Heat of formation + Delta-G solvation = 9.173508 kcal Electronic energy + Delta-G solvation = -17738.054711 eV Core-core repulsion = 14955.980080 eV Total energy + Delta-G solvation = -2782.074632 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.89998 -39.06722 -36.63171 -34.83308 -34.49959 -31.43440 -30.02382 -28.23959 -27.18303 -25.50671 -24.10901 -22.58285 -20.10737 -19.44091 -18.66533 -18.11502 -17.60514 -16.75678 -16.33986 -15.90389 -15.73041 -15.21805 -14.42822 -14.35456 -14.18528 -13.87425 -13.68747 -13.47111 -13.40282 -13.08317 -13.04354 -12.87550 -12.68651 -12.51847 -12.31351 -12.13980 -11.71507 -11.62942 -10.81543 -10.64420 -10.34985 -9.51122 -8.90528 -8.51568 -8.20284 -6.36795 -0.46673 0.77659 1.14922 1.33881 1.36960 1.37843 1.47398 1.89435 2.32622 2.60264 2.70940 3.06700 4.02573 4.08321 4.14582 4.40643 4.47407 4.55782 4.67743 4.73608 4.75411 4.89424 4.95649 5.00413 5.12475 5.15105 5.22278 5.27713 5.44737 5.58565 5.64920 5.80295 5.91433 6.08495 6.71684 6.88972 7.29655 7.59117 8.84366 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.020981 B = 0.006028 C = 0.005597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.194011 B = 4643.861078 C = 5001.156842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.095 4.095 3 C -0.160 4.160 4 C -0.280 4.280 5 S 0.226 5.774 6 C -0.211 4.211 7 C 0.019 3.981 8 C -0.226 4.226 9 C 0.507 3.493 10 O -0.570 6.570 11 N -0.609 5.609 12 C 0.078 3.922 13 C 0.263 3.737 14 C -0.538 4.538 15 H 0.050 0.950 16 C 0.007 3.993 17 N -0.929 5.929 18 Si 0.966 3.034 19 H -0.262 1.262 20 H -0.281 1.281 21 H -0.275 1.275 22 H 0.061 0.939 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.150 0.850 26 H 0.169 0.831 27 H 0.183 0.817 28 H 0.170 0.830 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.018 0.982 33 H 0.000 1.000 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.320 -0.636 -15.319 18.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.192 4.192 4 C -0.417 4.417 5 S 0.500 5.500 6 C -0.329 4.329 7 C -0.002 4.002 8 C -0.249 4.249 9 C 0.300 3.700 10 O -0.454 6.454 11 N -0.340 5.340 12 C -0.064 4.064 13 C 0.141 3.859 14 C -0.577 4.577 15 H 0.068 0.932 16 C -0.192 4.192 17 N -0.569 5.569 18 Si 0.790 3.210 19 H -0.187 1.187 20 H -0.206 1.206 21 H -0.200 1.200 22 H 0.080 0.920 23 H 0.102 0.898 24 H 0.103 0.897 25 H 0.167 0.833 26 H 0.186 0.814 27 H 0.200 0.800 28 H 0.187 0.813 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.036 0.964 33 H 0.018 0.982 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.564 -0.808 -15.135 17.409 hybrid contribution -0.927 1.236 1.417 2.096 sum -9.491 0.427 -13.718 16.687 Atomic orbital electron populations 1.20496 0.87656 1.04137 1.02200 1.19787 0.98266 0.90759 1.02040 1.19950 0.92538 1.00099 1.06661 1.25438 1.01464 1.02588 1.12257 1.82947 1.06522 0.97771 1.62764 1.22609 0.96992 0.98266 1.15021 1.21064 0.95147 0.88629 0.95379 1.22488 1.02356 1.02722 0.97332 1.17997 0.82196 0.85804 0.83997 1.90933 1.64613 1.18167 1.71703 1.48176 1.44121 1.08064 1.33665 1.21937 1.02301 0.79894 1.02307 1.18669 0.88046 0.94167 0.85036 1.21694 0.94030 1.46017 0.95962 0.93214 1.25842 0.95795 0.94864 1.02665 1.70056 1.08341 1.47830 1.30666 0.85448 0.78278 0.78490 0.78788 1.18665 1.20606 1.19985 0.92049 0.89827 0.89725 0.83267 0.81390 0.80038 0.81315 0.91462 0.91906 0.88573 0.96371 0.98237 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.81 9.94 71.24 0.71 -1.11 16 2 C -0.10 -2.80 5.92 -20.34 -0.12 -2.92 16 3 C -0.16 -4.79 9.97 21.08 0.21 -4.58 16 4 C -0.28 -9.01 10.92 66.82 0.73 -8.28 16 5 S 0.23 8.03 19.41 -56.49 -1.10 6.93 16 6 C -0.21 -6.76 4.57 22.81 0.10 -6.65 16 7 C 0.02 0.49 9.14 22.50 0.21 0.70 16 8 C -0.23 -6.65 9.13 22.47 0.21 -6.45 16 9 C 0.51 21.51 7.07 85.04 0.60 22.11 16 10 O -0.57 -28.74 11.03 -4.64 -0.05 -28.79 16 11 N -0.61 -26.71 2.86 -861.96 -2.46 -29.17 16 12 C 0.08 2.40 10.16 127.77 1.30 3.70 16 13 C 0.26 14.58 5.16 85.63 0.44 15.02 16 14 C -0.54 -31.93 9.39 25.60 0.24 -31.69 16 15 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 16 C 0.01 0.41 5.46 84.65 0.46 0.88 16 17 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 18 Si 0.97 46.06 29.54 68.60 2.03 48.08 16 19 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 21 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 22 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.08 1.38 7.44 -2.39 -0.02 1.36 16 25 H 0.15 3.64 8.06 -2.91 -0.02 3.62 16 26 H 0.17 4.67 8.06 -2.91 -0.02 4.64 16 27 H 0.18 2.84 7.80 -2.91 -0.02 2.82 16 28 H 0.17 3.49 6.03 -2.91 -0.02 3.47 16 29 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.06 2.04 8.07 -2.38 -0.02 2.03 16 31 H 0.10 2.22 6.02 -2.39 -0.01 2.21 16 32 H 0.02 1.03 8.07 -2.38 -0.02 1.01 16 33 H 0.00 -0.03 7.42 -2.39 -0.02 -0.05 16 34 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -76.73 301.78 4.88 -71.85 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.09 Total: 7.51 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: 5.09 Total: -19.29 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -2.18 Total: -86.29 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.05 Total: -28.79 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.08 kcal Atomic # 16 Polarization: 8.03 SS G_CDS: -1.10 Total: 6.93 kcal Total: -76.73 4.88 -71.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701277200.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.024 kcal (2) G-P(sol) polarization free energy of solvation -76.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds