Wall clock time and date at job start Mon Mar 30 2020 06:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37431 * 123.38957 * 2 1 4 4 C 1.33857 * 115.12859 * 179.76957 * 3 2 1 5 5 S 1.70610 * 111.01457 * 0.48625 * 4 3 2 6 6 C 1.37046 * 123.38815 * 180.29595 * 2 1 3 7 7 C 1.41584 * 125.47414 * 359.97109 * 6 2 1 8 8 C 1.35650 * 119.99689 * 180.02562 * 7 6 2 9 9 C 1.41480 * 119.99667 * 180.02562 * 8 7 6 10 10 O 1.21779 * 120.00002 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99494 * 180.02562 * 9 8 7 12 12 C 1.46504 * 120.00433 * 359.97438 * 11 9 8 13 13 C 1.46507 * 119.99731 * 180.02562 * 11 9 8 14 14 C 1.50697 * 109.47111 * 89.99600 * 13 11 9 15 15 H 1.08005 * 120.00124 * 0.02562 * 14 13 11 16 16 C 1.37875 * 120.00063 * 179.97438 * 14 13 11 17 17 N 1.31512 * 119.99933 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00182 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47214 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47193 * 120.00140 * 18 16 14 21 21 H 1.48500 * 109.47497 * 240.00154 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.70700 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.70800 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.70781 * 1 2 3 25 25 H 1.08005 * 122.43603 * 359.97438 * 3 2 1 26 26 H 1.07999 * 124.49561 * 180.25032 * 4 3 2 27 27 H 1.07996 * 120.00127 * 0.02562 * 7 6 2 28 28 H 1.07999 * 120.00215 * 0.02562 * 8 7 6 29 29 H 1.09004 * 109.46482 * 90.00727 * 12 11 9 30 30 H 1.08993 * 109.46981 * 210.00086 * 12 11 9 31 31 H 1.08999 * 109.46947 * 330.00980 * 12 11 9 32 32 H 1.08990 * 109.46865 * 209.99462 * 13 11 9 33 33 H 1.08992 * 109.46664 * 329.99896 * 13 11 9 34 34 H 0.97006 * 119.99991 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2634 1.1475 0.0000 4 6 3.5880 0.9552 0.0049 5 16 3.9647 -0.7088 -0.0037 6 6 2.2612 -1.1443 -0.0059 7 6 1.7506 -2.4648 -0.0121 8 6 2.6018 -3.5210 -0.0171 9 6 2.0916 -4.8406 -0.0239 10 8 0.8884 -5.0282 -0.0258 11 7 2.9374 -5.8900 -0.0284 12 6 4.3849 -5.6643 -0.0267 13 6 2.4091 -7.2565 -0.0360 14 6 2.2295 -7.7177 -1.4593 15 1 2.4838 -7.0590 -2.2766 16 6 1.7415 -8.9809 -1.7183 17 7 1.4323 -9.7832 -0.7232 18 14 1.5181 -9.5524 -3.4826 19 1 1.9350 -8.4701 -4.4100 20 1 2.3523 -10.7574 -3.7220 21 1 0.0900 -9.8841 -3.7186 22 1 -0.3633 -0.0053 1.0277 23 1 -0.3633 -0.8874 -0.5184 24 1 -0.3633 0.8926 -0.5093 25 1 1.8211 2.1328 -0.0004 26 1 4.3212 1.7481 0.0095 27 1 0.6836 -2.6312 -0.0129 28 1 3.6689 -3.3546 -0.0159 29 1 4.7434 -5.6131 1.0014 30 1 4.8812 -6.4852 -0.5441 31 1 4.6070 -4.7265 -0.5361 32 1 3.1077 -7.9188 0.4751 33 1 1.4475 -7.2770 0.4767 34 1 1.0886 -10.6718 -0.9054 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701277201.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:04 Heat of formation + Delta-G solvation = 12.127174 kcal Electronic energy + Delta-G solvation = -16993.189487 eV Core-core repulsion = 14211.242936 eV Total energy + Delta-G solvation = -2781.946551 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.25197 -38.47369 -34.88732 -33.82664 -32.54742 -30.69484 -28.40744 -27.12942 -25.72508 -24.09456 -22.99739 -21.18258 -19.06912 -18.11603 -17.11244 -16.47193 -16.35070 -15.32849 -15.20718 -14.44929 -14.32288 -14.12033 -13.47753 -13.20011 -12.76091 -12.53621 -12.40697 -12.30414 -12.15211 -11.99976 -11.81755 -11.55344 -11.15821 -10.86622 -10.76820 -10.53997 -10.34900 -10.13196 -9.57648 -8.98112 -8.55475 -8.41043 -8.02261 -7.54112 -6.01336 -4.05965 0.21043 1.46320 1.87212 1.88452 2.74243 3.31850 3.39239 3.43862 4.04337 4.16183 4.48222 4.73443 4.89650 5.05383 5.19094 5.23968 5.32153 5.39148 5.52014 5.63294 5.77845 5.79198 5.82334 5.96661 6.10133 6.23193 6.29228 6.45278 6.51269 7.13387 7.48640 7.58516 7.95446 8.26841 8.45376 8.93553 9.12738 9.58983 11.06660 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.031781 B = 0.004048 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.829615 B = 6915.940737 C = 7205.337570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.080 4.080 3 C -0.137 4.137 4 C -0.252 4.252 5 S 0.185 5.815 6 C -0.182 4.182 7 C -0.009 4.009 8 C -0.198 4.198 9 C 0.535 3.465 10 O -0.547 6.547 11 N -0.597 5.597 12 C 0.082 3.918 13 C 0.244 3.756 14 C -0.524 4.524 15 H 0.058 0.942 16 C 0.060 3.940 17 N -0.895 5.895 18 Si 0.898 3.102 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.283 1.283 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.138 0.862 26 H 0.163 0.837 27 H 0.146 0.854 28 H 0.121 0.879 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.032 0.968 33 H 0.045 0.955 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.785 20.921 2.561 21.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.093 4.093 3 C -0.168 4.168 4 C -0.389 4.389 5 S 0.454 5.546 6 C -0.299 4.299 7 C -0.031 4.031 8 C -0.221 4.221 9 C 0.325 3.675 10 O -0.428 6.428 11 N -0.328 5.328 12 C -0.062 4.062 13 C 0.124 3.876 14 C -0.563 4.563 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.534 5.534 18 Si 0.726 3.274 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.209 1.209 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.087 0.913 25 H 0.156 0.844 26 H 0.180 0.820 27 H 0.163 0.837 28 H 0.138 0.862 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.524 19.815 2.598 21.023 hybrid contribution -1.152 0.562 -0.988 1.618 sum 5.372 20.377 1.610 21.135 Atomic orbital electron populations 1.20547 0.89259 1.03203 1.02693 1.19624 0.97336 0.91155 1.01196 1.19831 0.92617 0.99436 1.04957 1.25149 1.00553 1.02024 1.11201 1.83100 1.05296 0.97659 1.68509 1.22517 0.96412 0.97110 1.13910 1.20659 1.00966 0.88302 0.93133 1.22393 0.99839 0.94070 1.05833 1.16799 0.86800 0.85106 0.78765 1.90794 1.14776 1.86464 1.50796 1.48107 1.05446 1.08749 1.70515 1.21688 0.82239 1.01808 1.00489 1.19303 0.95625 0.75106 0.97536 1.21484 1.43369 0.99182 0.92298 0.92394 1.24939 0.95227 0.96529 0.97468 1.69948 1.44318 1.08402 1.30777 0.86438 0.77887 0.78441 0.84630 1.19808 1.20975 1.20859 0.90750 0.90775 0.91290 0.84443 0.81957 0.83683 0.86161 0.93645 0.90660 0.92404 0.94960 0.93703 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 9.88 36.01 0.36 -0.58 16 2 C -0.08 -0.91 5.92 -105.35 -0.62 -1.53 16 3 C -0.14 -1.34 9.97 -41.41 -0.41 -1.75 16 4 C -0.25 -2.34 10.92 29.19 0.32 -2.02 16 5 S 0.18 1.96 21.76 -107.50 -2.34 -0.38 16 6 C -0.18 -2.35 6.21 -38.74 -0.24 -2.59 16 7 C -0.01 -0.14 8.94 -39.23 -0.35 -0.49 16 8 C -0.20 -3.34 8.57 -39.27 -0.34 -3.67 16 9 C 0.54 11.81 7.44 -15.02 -0.11 11.70 16 10 O -0.55 -14.28 15.69 5.12 0.08 -14.20 16 11 N -0.60 -13.29 2.86 -186.44 -0.53 -13.83 16 12 C 0.08 1.36 10.12 59.85 0.61 1.96 16 13 C 0.24 6.57 5.16 -5.19 -0.03 6.54 16 14 C -0.52 -15.23 9.39 -34.44 -0.32 -15.56 16 15 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 18 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 19 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.07 0.76 7.07 -51.93 -0.37 0.39 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 26 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 27 H 0.15 2.31 6.47 -52.49 -0.34 1.98 16 28 H 0.12 1.70 5.06 -52.49 -0.27 1.44 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 31 H 0.06 0.80 6.08 -51.93 -0.32 0.49 16 32 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.04 1.35 7.42 -51.93 -0.39 0.97 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 307.33 15.07 4.63 4.63 Total: -1.00 -33.82 307.33 -7.86 -41.67 By element: Atomic # 1 Polarization: 1.69 SS G_CDS: -4.17 Total: -2.48 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -1.24 Total: -6.34 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.20 Total: -40.07 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.08 Total: -14.20 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.34 Total: -0.38 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.82 -7.86 -41.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701277201.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.801 kcal (2) G-P(sol) polarization free energy of solvation -33.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds