Wall clock time and date at job start Mon Mar 30 2020 06:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37431 * 123.38957 * 2 1 4 4 C 1.33857 * 115.12859 * 179.76957 * 3 2 1 5 5 S 1.70610 * 111.01457 * 0.48625 * 4 3 2 6 6 C 1.37046 * 123.38815 * 180.29595 * 2 1 3 7 7 C 1.41584 * 125.47414 * 359.97109 * 6 2 1 8 8 C 1.35650 * 119.99689 * 180.02562 * 7 6 2 9 9 C 1.41480 * 119.99667 * 180.02562 * 8 7 6 10 10 O 1.21779 * 120.00002 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99494 * 180.02562 * 9 8 7 12 12 C 1.46504 * 120.00433 * 359.97438 * 11 9 8 13 13 C 1.46507 * 119.99731 * 180.02562 * 11 9 8 14 14 C 1.50697 * 109.47111 * 89.99600 * 13 11 9 15 15 H 1.08005 * 120.00124 * 0.02562 * 14 13 11 16 16 C 1.37875 * 120.00063 * 179.97438 * 14 13 11 17 17 N 1.31512 * 119.99933 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00182 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47214 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47193 * 120.00140 * 18 16 14 21 21 H 1.48500 * 109.47497 * 240.00154 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.70700 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.70800 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.70781 * 1 2 3 25 25 H 1.08005 * 122.43603 * 359.97438 * 3 2 1 26 26 H 1.07999 * 124.49561 * 180.25032 * 4 3 2 27 27 H 1.07996 * 120.00127 * 0.02562 * 7 6 2 28 28 H 1.07999 * 120.00215 * 0.02562 * 8 7 6 29 29 H 1.09004 * 109.46482 * 90.00727 * 12 11 9 30 30 H 1.08993 * 109.46981 * 210.00086 * 12 11 9 31 31 H 1.08999 * 109.46947 * 330.00980 * 12 11 9 32 32 H 1.08990 * 109.46865 * 209.99462 * 13 11 9 33 33 H 1.08992 * 109.46664 * 329.99896 * 13 11 9 34 34 H 0.97006 * 119.99991 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2634 1.1475 0.0000 4 6 3.5880 0.9552 0.0049 5 16 3.9647 -0.7088 -0.0037 6 6 2.2612 -1.1443 -0.0059 7 6 1.7506 -2.4648 -0.0121 8 6 2.6018 -3.5210 -0.0171 9 6 2.0916 -4.8406 -0.0239 10 8 0.8884 -5.0282 -0.0258 11 7 2.9374 -5.8900 -0.0284 12 6 4.3849 -5.6643 -0.0267 13 6 2.4091 -7.2565 -0.0360 14 6 2.2295 -7.7177 -1.4593 15 1 2.4838 -7.0590 -2.2766 16 6 1.7415 -8.9809 -1.7183 17 7 1.4323 -9.7832 -0.7232 18 14 1.5181 -9.5524 -3.4826 19 1 1.9350 -8.4701 -4.4100 20 1 2.3523 -10.7574 -3.7220 21 1 0.0900 -9.8841 -3.7186 22 1 -0.3633 -0.0053 1.0277 23 1 -0.3633 -0.8874 -0.5184 24 1 -0.3633 0.8926 -0.5093 25 1 1.8211 2.1328 -0.0004 26 1 4.3212 1.7481 0.0095 27 1 0.6836 -2.6312 -0.0129 28 1 3.6689 -3.3546 -0.0159 29 1 4.7434 -5.6131 1.0014 30 1 4.8812 -6.4852 -0.5441 31 1 4.6070 -4.7265 -0.5361 32 1 3.1077 -7.9188 0.4751 33 1 1.4475 -7.2770 0.4767 34 1 1.0886 -10.6718 -0.9054 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701277201.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:04 Heat of formation + Delta-G solvation = -8.945670 kcal Electronic energy + Delta-G solvation = -16994.103274 eV Core-core repulsion = 14211.242936 eV Total energy + Delta-G solvation = -2782.860338 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.86222 -39.41068 -36.67307 -35.12790 -34.62618 -31.60630 -30.13939 -28.44617 -27.28645 -25.55475 -24.26965 -22.57249 -20.17094 -19.50602 -18.69679 -18.19463 -17.66403 -16.99893 -16.32328 -16.17711 -15.97877 -15.03341 -14.75057 -14.33481 -14.28588 -13.99751 -13.78435 -13.52498 -13.40750 -13.15068 -13.09999 -12.89512 -12.71515 -12.57246 -12.47099 -12.22012 -11.71141 -11.64859 -11.42739 -10.74976 -10.65462 -9.49292 -9.34616 -8.95370 -8.22461 -6.38243 -0.81519 0.61938 0.83899 1.06856 1.35970 1.38558 1.50880 1.78905 2.31876 2.51590 2.58395 3.06112 3.79544 3.98939 4.01213 4.20574 4.28083 4.42115 4.55317 4.65653 4.69378 4.79056 4.88912 4.91783 5.00186 5.06848 5.14681 5.19162 5.30373 5.51748 5.55400 5.56969 5.84686 6.05484 6.68875 6.76898 7.26754 7.45678 8.84469 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.031781 B = 0.004048 C = 0.003885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.829615 B = 6915.940737 C = 7205.337570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.060 4.060 3 C -0.154 4.154 4 C -0.228 4.228 5 S 0.202 5.798 6 C -0.239 4.239 7 C 0.031 3.969 8 C -0.234 4.234 9 C 0.530 3.470 10 O -0.608 6.608 11 N -0.608 5.608 12 C 0.077 3.923 13 C 0.258 3.742 14 C -0.544 4.544 15 H 0.051 0.949 16 C 0.007 3.993 17 N -0.928 5.928 18 Si 0.971 3.029 19 H -0.268 1.268 20 H -0.267 1.267 21 H -0.280 1.280 22 H 0.083 0.917 23 H 0.059 0.941 24 H 0.092 0.908 25 H 0.166 0.834 26 H 0.196 0.804 27 H 0.127 0.873 28 H 0.149 0.851 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.026 0.974 33 H -0.002 1.002 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.317 23.918 1.589 25.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.074 4.074 3 C -0.184 4.184 4 C -0.365 4.365 5 S 0.472 5.528 6 C -0.356 4.356 7 C 0.009 3.991 8 C -0.257 4.257 9 C 0.324 3.676 10 O -0.494 6.494 11 N -0.338 5.338 12 C -0.065 4.065 13 C 0.136 3.864 14 C -0.582 4.582 15 H 0.070 0.930 16 C -0.192 4.192 17 N -0.568 5.568 18 Si 0.795 3.205 19 H -0.192 1.192 20 H -0.192 1.192 21 H -0.206 1.206 22 H 0.102 0.898 23 H 0.078 0.922 24 H 0.111 0.889 25 H 0.183 0.817 26 H 0.213 0.787 27 H 0.145 0.855 28 H 0.166 0.834 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.108 0.892 32 H 0.044 0.956 33 H 0.016 0.984 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.115 22.817 1.635 24.272 hybrid contribution -1.648 -0.081 -0.619 1.762 sum 6.467 22.736 1.016 23.659 Atomic orbital electron populations 1.20668 0.88496 1.03740 1.03419 1.20037 0.98216 0.91331 0.97856 1.20113 0.92754 1.00030 1.05505 1.25671 1.01202 1.02037 1.07611 1.83046 1.03292 0.98612 1.67840 1.22457 0.98487 0.96205 1.18424 1.20664 1.00033 0.89541 0.88884 1.22013 1.01265 0.91180 1.11237 1.17563 0.86036 0.86805 0.77213 1.90742 1.17245 1.87459 1.53929 1.48111 1.07978 1.06970 1.70717 1.21969 0.78667 1.03195 1.02638 1.18781 0.93465 0.77907 0.96198 1.21725 1.43992 0.99619 0.92903 0.93025 1.25887 0.94518 0.96523 1.02254 1.70063 1.44689 1.08896 1.33174 0.85324 0.77984 0.78383 0.78833 1.19250 1.19151 1.20581 0.89820 0.92169 0.88876 0.81654 0.78734 0.85486 0.83372 0.91017 0.91120 0.89214 0.95633 0.98357 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 9.88 71.24 0.70 -1.10 16 2 C -0.06 -1.21 5.92 -20.33 -0.12 -1.33 16 3 C -0.15 -2.35 9.97 21.08 0.21 -2.14 16 4 C -0.23 -3.20 10.92 66.82 0.73 -2.47 16 5 S 0.20 3.69 21.76 -56.49 -1.23 2.46 16 6 C -0.24 -5.80 6.21 22.82 0.14 -5.66 16 7 C 0.03 0.95 8.94 22.50 0.20 1.15 16 8 C -0.23 -8.01 8.57 22.47 0.19 -7.82 16 9 C 0.53 24.59 7.44 85.04 0.63 25.22 16 10 O -0.61 -34.09 15.69 -4.60 -0.07 -34.16 16 11 N -0.61 -28.16 2.86 -861.96 -2.46 -30.62 16 12 C 0.08 2.53 10.12 127.77 1.29 3.82 16 13 C 0.26 14.72 5.16 85.63 0.44 15.16 16 14 C -0.54 -32.76 9.39 25.60 0.24 -32.52 16 15 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 16 C 0.01 0.42 5.46 84.65 0.46 0.88 16 17 N -0.93 -57.55 13.29 21.45 0.28 -57.27 16 18 Si 0.97 46.09 29.54 68.60 2.03 48.12 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 22 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.06 1.21 7.07 -2.39 -0.02 1.20 16 24 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 25 H 0.17 1.63 8.06 -2.91 -0.02 1.60 16 26 H 0.20 1.48 8.06 -2.91 -0.02 1.46 16 27 H 0.13 4.30 6.47 -2.91 -0.02 4.28 16 28 H 0.15 4.04 5.06 -2.91 -0.01 4.02 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 30 H 0.07 2.36 8.07 -2.39 -0.02 2.34 16 31 H 0.09 2.35 6.08 -2.39 -0.01 2.33 16 32 H 0.03 1.46 8.07 -2.39 -0.02 1.44 16 33 H 0.00 -0.11 7.42 -2.39 -0.02 -0.13 16 34 H 0.27 15.44 8.31 -92.70 -0.77 14.66 16 Total: -1.00 -77.64 307.33 4.78 -72.86 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 1.10 Total: 5.40 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 5.13 Total: -6.80 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -2.18 Total: -87.89 kcal Atomic # 8 Polarization: -34.09 SS G_CDS: -0.07 Total: -34.16 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.23 Total: 2.46 kcal Total: -77.64 4.78 -72.86 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701277201.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.913 kcal (2) G-P(sol) polarization free energy of solvation -77.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds