Wall clock time and date at job start Mon Mar 30 2020 06:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33857 * 124.48974 * 2 1 4 4 C 1.37434 * 115.13251 * 180.02562 * 3 2 1 5 5 C 1.37051 * 113.21951 * 359.97438 * 4 3 2 6 6 C 1.41579 * 125.47835 * 180.02562 * 5 4 3 7 7 C 1.35651 * 120.00035 * 224.89788 * 6 5 4 8 8 C 1.41471 * 119.99815 * 10.22907 * 7 6 5 9 9 O 1.21783 * 120.00277 * 6.76123 * 8 7 6 10 10 N 1.34780 * 119.99654 * 186.76097 * 8 7 6 11 11 C 1.46489 * 120.00325 * 0.02562 * 10 8 7 12 12 C 1.46506 * 119.99699 * 180.02562 * 10 8 7 13 13 C 1.50696 * 109.47267 * 90.00014 * 12 10 8 14 14 H 1.07998 * 120.00276 * 0.02562 * 13 12 10 15 15 C 1.37874 * 120.00111 * 179.97438 * 13 12 10 16 16 N 1.31512 * 119.99985 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00079 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47048 * 90.00577 * 17 15 13 19 19 H 1.48504 * 109.47192 * 210.00168 * 17 15 13 20 20 H 1.48499 * 109.47187 * 330.00667 * 17 15 13 21 21 S 1.70606 * 124.49470 * 180.34878 * 2 1 3 22 22 H 1.09009 * 109.46814 * 90.00411 * 1 2 3 23 23 H 1.09002 * 109.47224 * 209.99953 * 1 2 3 24 24 H 1.08993 * 109.47663 * 330.00065 * 1 2 3 25 25 H 1.08001 * 122.43391 * 0.05234 * 3 2 1 26 26 H 1.07991 * 123.39204 * 179.97438 * 4 3 2 27 27 H 1.07997 * 119.99770 * 44.89618 * 6 5 4 28 28 H 1.08000 * 119.99790 * 189.95023 * 7 6 5 29 29 H 1.08995 * 109.47486 * 89.99627 * 11 10 8 30 30 H 1.09008 * 109.47717 * 210.00203 * 11 10 8 31 31 H 1.09007 * 109.47251 * 329.99485 * 11 10 8 32 32 H 1.08995 * 109.46935 * 210.00075 * 12 10 8 33 33 H 1.09007 * 109.47300 * 329.99839 * 12 10 8 34 34 H 0.97000 * 120.00123 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2650 1.1033 0.0000 4 6 3.6210 0.8798 -0.0006 5 6 3.9494 -0.4508 -0.0005 6 6 5.2656 -0.9723 -0.0004 7 6 5.5896 -1.9959 -0.8295 8 6 4.6870 -2.3992 -1.8415 9 8 3.6764 -1.7523 -2.0493 10 7 4.9458 -3.4995 -2.5757 11 6 6.1612 -4.2780 -2.3255 12 6 4.0114 -3.9169 -3.6241 13 6 4.3947 -3.2647 -4.9274 14 1 5.2491 -2.6055 -4.9707 15 6 3.6553 -3.5102 -6.0649 16 7 2.6151 -4.3133 -6.0124 17 14 4.1300 -2.7012 -7.6803 18 1 5.0824 -3.5757 -8.4108 19 1 2.9136 -2.4950 -8.5069 20 1 4.7714 -1.3900 -7.4076 21 16 2.4732 -1.4061 -0.0086 22 1 -0.3633 -0.0001 -1.0278 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 1.8417 2.0969 0.0008 26 1 4.3541 1.6729 -0.0010 27 1 6.0117 -0.5552 0.6597 28 1 6.5385 -2.4999 -0.7200 29 1 5.9537 -5.0463 -1.5808 30 1 6.4882 -4.7493 -3.2524 31 1 6.9463 -3.6175 -1.9573 32 1 4.0501 -5.0005 -3.7349 33 1 3.0001 -3.6155 -3.3506 34 1 2.0951 -4.4864 -6.8127 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701294280.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:29 Heat of formation + Delta-G solvation = 29.462626 kcal Electronic energy + Delta-G solvation = -17629.967465 eV Core-core repulsion = 14848.772636 eV Total energy + Delta-G solvation = -2781.194829 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.33302 -37.55841 -35.00753 -33.62855 -32.57447 -30.82930 -28.07331 -26.53602 -25.53390 -23.59835 -22.77489 -21.11207 -19.19071 -18.02569 -16.62462 -16.46433 -16.09552 -15.29486 -14.65065 -14.38309 -14.07564 -13.88371 -13.36602 -12.97963 -12.62234 -12.54801 -12.27053 -12.12434 -12.05868 -11.84685 -11.42243 -11.30841 -11.09482 -10.87296 -10.52995 -10.35411 -10.13274 -9.61011 -9.42222 -8.86889 -8.40747 -8.05891 -7.49285 -7.09935 -6.01181 -4.05658 0.73218 1.98583 2.33011 2.60099 3.16919 3.31445 3.38048 3.43238 4.05826 4.23293 4.48531 5.16414 5.18761 5.28191 5.34297 5.44518 5.59034 5.69522 5.74807 5.84909 5.88103 5.97060 6.10261 6.20006 6.25969 6.40517 6.55153 6.76116 6.93293 7.14863 7.49069 7.60157 7.95623 8.27381 8.48389 8.94152 9.16033 9.59232 11.06465 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019895 B = 0.006179 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.072417 B = 4530.380764 C = 5196.353048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.240 4.240 3 C -0.160 4.160 4 C -0.114 4.114 5 C -0.197 4.197 6 C -0.004 4.004 7 C -0.212 4.212 8 C 0.518 3.482 9 O -0.526 6.526 10 N -0.596 5.596 11 C 0.082 3.918 12 C 0.245 3.755 13 C -0.523 4.523 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.896 5.896 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 S 0.290 5.710 22 H 0.072 0.928 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.125 0.875 26 H 0.132 0.868 27 H 0.133 0.867 28 H 0.130 0.870 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.045 0.955 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.987 4.938 14.632 15.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.360 4.360 3 C -0.192 4.192 4 C -0.145 4.145 5 C -0.315 4.315 6 C -0.026 4.026 7 C -0.236 4.236 8 C 0.308 3.692 9 O -0.407 6.407 10 N -0.327 5.327 11 C -0.062 4.062 12 C 0.126 3.874 13 C -0.562 4.562 14 H 0.074 0.926 15 C -0.141 4.141 16 N -0.535 5.535 17 Si 0.724 3.276 18 H -0.207 1.207 19 H -0.211 1.211 20 H -0.199 1.199 21 S 0.563 5.437 22 H 0.091 0.909 23 H 0.081 0.919 24 H 0.087 0.913 25 H 0.143 0.857 26 H 0.150 0.850 27 H 0.151 0.849 28 H 0.148 0.852 29 H 0.062 0.938 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.927 3.592 14.377 14.943 hybrid contribution 0.814 2.001 -1.271 2.507 sum 2.741 5.593 13.105 14.510 Atomic orbital electron populations 1.20259 0.88556 1.02231 1.02613 1.24235 1.01157 0.99563 1.11065 1.19590 0.92964 0.98522 1.08152 1.20487 0.95894 0.94594 1.03570 1.22394 0.97893 0.97217 1.14002 1.20566 0.92906 0.93141 0.95944 1.22524 1.02037 1.00746 0.98257 1.17096 0.86586 0.81845 0.83647 1.90932 1.27792 1.53097 1.68892 1.48174 1.23113 1.25697 1.35680 1.21676 0.87507 0.95493 1.01546 1.19266 0.89116 0.95060 0.83975 1.21434 1.13338 1.28070 0.93311 0.92560 1.24924 0.94847 0.95264 0.99077 1.69931 1.17869 1.36499 1.29184 0.86519 0.77932 0.79833 0.83278 1.20655 1.21101 1.19938 1.82802 0.93133 1.06096 1.61665 0.90927 0.91864 0.91276 0.85676 0.84985 0.84899 0.85197 0.93804 0.90888 0.92289 0.95178 0.93696 0.92788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 10.31 36.01 0.37 -0.64 16 2 C -0.24 -3.85 6.28 -35.85 -0.23 -4.07 16 3 C -0.16 -2.49 9.99 -41.41 -0.41 -2.91 16 4 C -0.11 -1.79 10.25 -40.31 -0.41 -2.20 16 5 C -0.20 -3.29 4.62 -38.74 -0.18 -3.47 16 6 C 0.00 -0.06 9.89 -39.23 -0.39 -0.44 16 7 C -0.21 -3.40 9.11 -39.28 -0.36 -3.76 16 8 C 0.52 11.00 6.97 -15.03 -0.10 10.89 16 9 O -0.53 -12.89 11.15 5.11 0.06 -12.83 16 10 N -0.60 -12.93 2.86 -186.45 -0.53 -13.46 16 11 C 0.08 1.33 10.17 59.84 0.61 1.94 16 12 C 0.25 6.51 5.16 -5.19 -0.03 6.48 16 13 C -0.52 -15.11 9.39 -34.44 -0.32 -15.43 16 14 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.90 -26.92 13.29 55.43 0.74 -26.19 16 17 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 21 S 0.29 5.04 19.27 -107.50 -2.07 2.97 16 22 H 0.07 0.97 8.14 -51.92 -0.42 0.54 16 23 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 26 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 27 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 28 H 0.13 1.64 6.02 -52.49 -0.32 1.33 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 1.22 8.07 -51.92 -0.42 0.80 16 31 H 0.06 0.78 6.00 -51.93 -0.31 0.47 16 32 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.05 1.33 7.42 -51.93 -0.39 0.95 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 303.48 15.07 4.57 4.57 Total: -1.00 -33.71 303.48 -8.16 -41.87 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -4.36 Total: -2.25 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -1.55 Total: -11.95 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.20 Total: -39.65 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: 0.06 Total: -12.83 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 5.04 SS G_CDS: -2.07 Total: 2.97 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.71 -8.16 -41.87 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701294280.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.336 kcal (2) G-P(sol) polarization free energy of solvation -33.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds