Wall clock time and date at job start Mon Mar 30 2020 06:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33857 * 124.48974 * 2 1 4 4 C 1.37434 * 115.13251 * 180.02562 * 3 2 1 5 5 C 1.37051 * 113.21951 * 359.97438 * 4 3 2 6 6 C 1.41579 * 125.47835 * 180.02562 * 5 4 3 7 7 C 1.35651 * 120.00035 * 224.89788 * 6 5 4 8 8 C 1.41471 * 119.99815 * 10.22907 * 7 6 5 9 9 O 1.21783 * 120.00277 * 6.76123 * 8 7 6 10 10 N 1.34780 * 119.99654 * 186.76097 * 8 7 6 11 11 C 1.46489 * 120.00325 * 0.02562 * 10 8 7 12 12 C 1.46506 * 119.99699 * 180.02562 * 10 8 7 13 13 C 1.50696 * 109.47267 * 90.00014 * 12 10 8 14 14 H 1.07998 * 120.00276 * 0.02562 * 13 12 10 15 15 C 1.37874 * 120.00111 * 179.97438 * 13 12 10 16 16 N 1.31512 * 119.99985 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00079 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47048 * 90.00577 * 17 15 13 19 19 H 1.48504 * 109.47192 * 210.00168 * 17 15 13 20 20 H 1.48499 * 109.47187 * 330.00667 * 17 15 13 21 21 S 1.70606 * 124.49470 * 180.34878 * 2 1 3 22 22 H 1.09009 * 109.46814 * 90.00411 * 1 2 3 23 23 H 1.09002 * 109.47224 * 209.99953 * 1 2 3 24 24 H 1.08993 * 109.47663 * 330.00065 * 1 2 3 25 25 H 1.08001 * 122.43391 * 0.05234 * 3 2 1 26 26 H 1.07991 * 123.39204 * 179.97438 * 4 3 2 27 27 H 1.07997 * 119.99770 * 44.89618 * 6 5 4 28 28 H 1.08000 * 119.99790 * 189.95023 * 7 6 5 29 29 H 1.08995 * 109.47486 * 89.99627 * 11 10 8 30 30 H 1.09008 * 109.47717 * 210.00203 * 11 10 8 31 31 H 1.09007 * 109.47251 * 329.99485 * 11 10 8 32 32 H 1.08995 * 109.46935 * 210.00075 * 12 10 8 33 33 H 1.09007 * 109.47300 * 329.99839 * 12 10 8 34 34 H 0.97000 * 120.00123 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2650 1.1033 0.0000 4 6 3.6210 0.8798 -0.0006 5 6 3.9494 -0.4508 -0.0005 6 6 5.2656 -0.9723 -0.0004 7 6 5.5896 -1.9959 -0.8295 8 6 4.6870 -2.3992 -1.8415 9 8 3.6764 -1.7523 -2.0493 10 7 4.9458 -3.4995 -2.5757 11 6 6.1612 -4.2780 -2.3255 12 6 4.0114 -3.9169 -3.6241 13 6 4.3947 -3.2647 -4.9274 14 1 5.2491 -2.6055 -4.9707 15 6 3.6553 -3.5102 -6.0649 16 7 2.6151 -4.3133 -6.0124 17 14 4.1300 -2.7012 -7.6803 18 1 5.0824 -3.5757 -8.4108 19 1 2.9136 -2.4950 -8.5069 20 1 4.7714 -1.3900 -7.4076 21 16 2.4732 -1.4061 -0.0086 22 1 -0.3633 -0.0001 -1.0278 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 1.8417 2.0969 0.0008 26 1 4.3541 1.6729 -0.0010 27 1 6.0117 -0.5552 0.6597 28 1 6.5385 -2.4999 -0.7200 29 1 5.9537 -5.0463 -1.5808 30 1 6.4882 -4.7493 -3.2524 31 1 6.9463 -3.6175 -1.9573 32 1 4.0501 -5.0005 -3.7349 33 1 3.0001 -3.6155 -3.3506 34 1 2.0951 -4.4864 -6.8127 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701294280.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:28 Heat of formation + Delta-G solvation = 8.886692 kcal Electronic energy + Delta-G solvation = -17630.859705 eV Core-core repulsion = 14848.772636 eV Total energy + Delta-G solvation = -2782.087069 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.88087 -38.78889 -36.68076 -34.97608 -34.66711 -32.04009 -29.95904 -27.84671 -27.09281 -25.30700 -24.08984 -22.64249 -20.44913 -19.47504 -18.67018 -18.01715 -17.49961 -16.86022 -16.39868 -15.93257 -15.59411 -15.16285 -14.54945 -14.45557 -14.10770 -13.96452 -13.76963 -13.45422 -13.41856 -13.26472 -13.11371 -12.87153 -12.61288 -12.53243 -12.35865 -12.14549 -11.71940 -11.58521 -10.71554 -10.64390 -10.38823 -9.56970 -8.88509 -8.53412 -8.20498 -6.36771 -0.50707 0.76858 1.08959 1.33870 1.36252 1.37082 1.47418 1.95004 2.32535 2.59456 2.70723 3.06671 4.02691 4.06092 4.08887 4.39101 4.45340 4.58492 4.67706 4.68794 4.74713 4.77726 4.93661 4.99984 5.04958 5.09537 5.21384 5.33169 5.42301 5.54524 5.58556 5.78033 5.90908 6.08394 6.71532 6.88189 7.29522 7.58068 8.84377 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.019895 B = 0.006179 C = 0.005387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.072417 B = 4530.380764 C = 5196.353048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.246 4.246 3 C -0.170 4.170 4 C -0.115 4.115 5 C -0.214 4.214 6 C 0.019 3.981 7 C -0.230 4.230 8 C 0.508 3.492 9 O -0.571 6.571 10 N -0.609 5.609 11 C 0.078 3.922 12 C 0.263 3.737 13 C -0.539 4.539 14 H 0.049 0.951 15 C 0.007 3.993 16 N -0.928 5.928 17 Si 0.966 3.034 18 H -0.262 1.262 19 H -0.280 1.280 20 H -0.275 1.275 21 S 0.224 5.776 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.096 0.904 25 H 0.150 0.850 26 H 0.161 0.839 27 H 0.185 0.815 28 H 0.170 0.830 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.019 0.981 33 H 0.000 1.000 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.924 6.511 15.322 17.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.366 4.366 3 C -0.201 4.201 4 C -0.147 4.147 5 C -0.332 4.332 6 C -0.002 4.002 7 C -0.253 4.253 8 C 0.300 3.700 9 O -0.455 6.455 10 N -0.340 5.340 11 C -0.065 4.065 12 C 0.141 3.859 13 C -0.578 4.578 14 H 0.067 0.933 15 C -0.191 4.191 16 N -0.568 5.568 17 Si 0.790 3.210 18 H -0.187 1.187 19 H -0.206 1.206 20 H -0.200 1.200 21 S 0.497 5.503 22 H 0.082 0.918 23 H 0.089 0.911 24 H 0.114 0.886 25 H 0.168 0.832 26 H 0.179 0.821 27 H 0.202 0.798 28 H 0.187 0.813 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.114 0.886 32 H 0.037 0.963 33 H 0.018 0.982 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.901 5.147 15.094 16.418 hybrid contribution 0.134 1.578 -1.407 2.119 sum 4.035 6.725 13.687 15.775 Atomic orbital electron populations 1.20356 0.86813 1.04000 1.02565 1.24597 1.02516 0.98745 1.10752 1.19996 0.93231 0.99446 1.07452 1.20916 0.96651 0.94885 1.02201 1.22749 0.98256 0.97469 1.14694 1.21131 0.92636 0.91410 0.95048 1.22495 1.02624 1.02365 0.97856 1.17973 0.86775 0.80998 0.84244 1.90920 1.29826 1.54411 1.70310 1.48176 1.24069 1.26868 1.34864 1.21940 0.86244 0.96336 1.01934 1.18674 0.88364 0.93948 0.84935 1.21688 1.13261 1.28170 0.94635 0.93251 1.25837 0.94683 0.95746 1.02867 1.70050 1.18804 1.37599 1.30368 0.85449 0.78000 0.78786 0.78767 1.18673 1.20565 1.20040 1.83014 0.95587 1.08473 1.63179 0.91754 0.91066 0.88580 0.83247 0.82130 0.79822 0.81319 0.91460 0.91875 0.88579 0.96349 0.98203 0.92458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.01 10.31 71.24 0.73 -1.27 16 2 C -0.25 -7.84 6.28 24.69 0.15 -7.68 16 3 C -0.17 -5.01 9.99 21.08 0.21 -4.80 16 4 C -0.12 -3.37 10.25 21.80 0.22 -3.14 16 5 C -0.21 -6.85 4.62 22.82 0.11 -6.74 16 6 C 0.02 0.49 9.89 22.49 0.22 0.72 16 7 C -0.23 -6.85 9.11 22.47 0.20 -6.64 16 8 C 0.51 21.61 6.97 85.04 0.59 22.20 16 9 O -0.57 -28.90 11.15 -4.61 -0.05 -28.95 16 10 N -0.61 -26.77 2.86 -861.97 -2.46 -29.23 16 11 C 0.08 2.41 10.17 127.77 1.30 3.71 16 12 C 0.26 14.58 5.16 85.63 0.44 15.02 16 13 C -0.54 -31.98 9.39 25.60 0.24 -31.74 16 14 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 15 C 0.01 0.44 5.46 84.65 0.46 0.90 16 16 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 17 Si 0.97 46.04 29.54 68.60 2.03 48.07 16 18 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 19 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 21 S 0.22 8.01 19.27 -56.49 -1.09 6.92 16 22 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 23 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 25 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 26 H 0.16 3.65 8.06 -2.92 -0.02 3.63 16 27 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 28 H 0.17 3.55 6.02 -2.91 -0.02 3.53 16 29 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 2.06 8.07 -2.38 -0.02 2.04 16 31 H 0.10 2.24 6.00 -2.38 -0.01 2.22 16 32 H 0.02 1.04 8.07 -2.39 -0.02 1.02 16 33 H 0.00 -0.01 7.42 -2.38 -0.02 -0.03 16 34 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -76.68 303.48 4.69 -71.98 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 1.09 Total: 7.64 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 4.89 Total: -19.47 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -2.18 Total: -86.20 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.05 Total: -28.95 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Atomic # 16 Polarization: 8.01 SS G_CDS: -1.09 Total: 6.92 kcal Total: -76.68 4.69 -71.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701294280.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.869 kcal (2) G-P(sol) polarization free energy of solvation -76.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds