Wall clock time and date at job start Mon Mar 30 2020 06:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33864 * 124.49453 * 2 1 4 4 C 1.37433 * 115.12504 * 180.02562 * 3 2 1 5 5 C 1.37034 * 113.22609 * 0.02562 * 4 3 2 6 6 C 1.41585 * 125.47586 * 179.97438 * 5 4 3 7 7 C 1.35651 * 120.00206 * 224.89896 * 6 5 4 8 8 C 1.41468 * 119.99881 * 10.23793 * 7 6 5 9 9 O 1.21789 * 120.00380 * 6.78768 * 8 7 6 10 10 N 1.34785 * 120.00120 * 186.77845 * 8 7 6 11 11 C 1.46499 * 120.00200 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.46913 * 35.00492 * 11 10 8 13 13 C 1.52998 * 109.47114 * 275.00145 * 11 10 8 14 14 C 1.50703 * 109.46855 * 155.00091 * 11 10 8 15 15 H 1.08002 * 120.00101 * 0.02562 * 14 11 10 16 16 C 1.37876 * 119.99467 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00311 * 359.97438 * 16 14 11 18 18 Si 1.86807 * 119.99659 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.47101 * 59.99494 * 18 16 14 20 20 H 1.48497 * 109.47059 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46683 * 299.99707 * 18 16 14 22 22 S 1.70607 * 124.49281 * 180.27658 * 2 1 3 23 23 H 1.08992 * 109.47675 * 89.99450 * 1 2 3 24 24 H 1.09004 * 109.47045 * 209.99996 * 1 2 3 25 25 H 1.09003 * 109.46824 * 329.99743 * 1 2 3 26 26 H 1.07996 * 122.42972 * 0.02562 * 3 2 1 27 27 H 1.08010 * 123.38101 * 179.97438 * 4 3 2 28 28 H 1.08001 * 119.99538 * 44.90033 * 6 5 4 29 29 H 1.08000 * 119.99829 * 190.24007 * 7 6 5 30 30 H 0.96997 * 119.99409 * 0.02562 * 10 8 7 31 31 H 1.09002 * 109.47131 * 60.00094 * 13 11 10 32 32 H 1.08991 * 109.47116 * 300.00402 * 13 11 10 33 33 H 1.08998 * 109.47031 * 179.97438 * 13 11 10 34 34 H 0.97000 * 120.00091 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2651 1.1033 0.0000 4 6 3.6211 0.8795 -0.0006 5 6 3.9492 -0.4509 -0.0016 6 6 5.2655 -0.9726 -0.0028 7 6 5.5889 -1.9956 -0.8329 8 6 4.6857 -2.3981 -1.8446 9 8 3.6752 -1.7506 -2.0517 10 7 4.9436 -3.4981 -2.5796 11 6 4.0086 -3.9146 -3.6277 12 1 3.5725 -3.0327 -4.0969 13 6 2.8975 -4.7664 -3.0108 14 6 4.7445 -4.7233 -4.6648 15 1 5.8027 -4.9088 -4.5541 16 6 4.0667 -5.2263 -5.7551 17 7 2.7781 -5.0008 -5.8896 18 14 4.9787 -6.2294 -7.0403 19 1 5.5720 -7.4312 -6.4008 20 1 4.0309 -6.6515 -8.1028 21 1 6.0579 -5.4032 -7.6386 22 16 2.4731 -1.4061 -0.0068 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.8418 2.0968 0.0004 27 1 4.3542 1.6727 -0.0010 28 1 6.0120 -0.5559 0.6571 29 1 6.5358 -2.5028 -0.7213 30 1 5.7483 -4.0139 -2.4145 31 1 2.3652 -4.1814 -2.2606 32 1 3.3336 -5.6481 -2.5416 33 1 2.2016 -5.0759 -3.7905 34 1 2.3012 -5.3550 -6.6565 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701294540.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:34 Heat of formation + Delta-G solvation = 16.278894 kcal Electronic energy + Delta-G solvation = -17530.623047 eV Core-core repulsion = 14748.856528 eV Total energy + Delta-G solvation = -2781.766519 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.26571 -37.58514 -35.03331 -33.56546 -32.37129 -30.90251 -28.97351 -26.31671 -25.22223 -23.33805 -22.49726 -20.33559 -19.43555 -18.90971 -17.07059 -16.05321 -15.94301 -15.20727 -14.76348 -14.25065 -14.01165 -13.84603 -13.40983 -13.09833 -12.80043 -12.37162 -12.31017 -12.09738 -11.74498 -11.50285 -11.41718 -11.07079 -10.94800 -10.67772 -10.38948 -10.30018 -10.20702 -9.49200 -9.02641 -8.98207 -8.55365 -8.15457 -7.58713 -7.22085 -6.09950 -4.19003 0.69474 1.94365 2.29658 2.56680 3.12522 3.26725 3.31875 3.33218 4.10218 4.27342 4.52200 5.12945 5.18622 5.22274 5.40131 5.46122 5.65542 5.66077 5.81783 5.85699 6.06915 6.18352 6.42072 6.52021 6.72331 6.86550 6.90498 7.00233 7.18997 7.51711 7.61431 7.73806 7.96064 8.18316 8.72785 8.81741 9.19493 9.48762 10.95955 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.030776 B = 0.005039 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.573147 B = 5554.796373 C = 6115.330073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.242 4.242 3 C -0.161 4.161 4 C -0.115 4.115 5 C -0.197 4.197 6 C -0.004 4.004 7 C -0.209 4.209 8 C 0.514 3.486 9 O -0.540 6.540 10 N -0.702 5.702 11 C 0.264 3.736 12 H 0.049 0.951 13 C -0.145 4.145 14 C -0.534 4.534 15 H 0.060 0.940 16 C 0.066 3.934 17 N -0.884 5.884 18 Si 0.901 3.099 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.277 1.277 22 S 0.293 5.707 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.125 0.875 27 H 0.132 0.868 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.387 0.613 31 H 0.015 0.985 32 H 0.025 0.975 33 H 0.089 0.911 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.201 7.276 13.391 15.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.362 4.362 3 C -0.193 4.193 4 C -0.147 4.147 5 C -0.315 4.315 6 C -0.026 4.026 7 C -0.233 4.233 8 C 0.302 3.698 9 O -0.423 6.423 10 N -0.348 5.348 11 C 0.162 3.838 12 H 0.067 0.933 13 C -0.204 4.204 14 C -0.572 4.572 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.522 5.522 18 Si 0.728 3.272 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 S 0.567 5.433 23 H 0.090 0.910 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.143 0.857 27 H 0.150 0.850 28 H 0.151 0.849 29 H 0.146 0.854 30 H 0.219 0.781 31 H 0.034 0.966 32 H 0.044 0.956 33 H 0.107 0.893 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.070 6.090 13.071 14.421 hybrid contribution 1.352 0.819 -0.897 1.818 sum 1.282 6.909 12.174 14.057 Atomic orbital electron populations 1.20258 0.88553 1.02278 1.02581 1.24254 1.01183 0.99620 1.11109 1.19596 0.92967 0.98523 1.08185 1.20486 0.95888 0.94595 1.03691 1.22398 0.97927 0.97225 1.13947 1.20557 0.92900 0.93264 0.95861 1.22426 1.01838 1.00734 0.98291 1.17223 0.86479 0.82178 0.83899 1.90922 1.27938 1.54549 1.68910 1.46561 1.25868 1.26186 1.36192 1.18703 0.86602 0.94919 0.83539 0.93331 1.22060 1.00347 0.98114 0.99871 1.21203 0.95330 1.34111 1.06585 0.92226 1.24880 0.94902 0.96068 0.97825 1.69892 1.07605 1.44962 1.29697 0.86523 0.79432 0.80313 0.80903 1.20182 1.21141 1.20207 1.82892 0.93035 1.05873 1.61539 0.90960 0.91840 0.91268 0.85682 0.84989 0.84886 0.85439 0.78067 0.96565 0.95612 0.89265 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.31 36.00 0.37 -0.60 16 2 C -0.24 -3.72 6.28 -35.85 -0.23 -3.95 16 3 C -0.16 -2.39 9.99 -41.41 -0.41 -2.81 16 4 C -0.12 -1.73 10.25 -40.31 -0.41 -2.14 16 5 C -0.20 -3.16 4.62 -38.74 -0.18 -3.34 16 6 C 0.00 -0.06 9.89 -39.23 -0.39 -0.44 16 7 C -0.21 -3.20 9.81 -39.28 -0.39 -3.58 16 8 C 0.51 10.34 7.06 -15.03 -0.11 10.23 16 9 O -0.54 -12.45 11.24 5.11 0.06 -12.39 16 10 N -0.70 -14.80 5.06 -57.87 -0.29 -15.09 16 11 C 0.26 6.77 2.56 -69.08 -0.18 6.60 16 12 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 13 C -0.15 -3.62 9.26 37.16 0.34 -3.27 16 14 C -0.53 -14.29 8.73 -34.44 -0.30 -14.59 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 17 N -0.88 -25.10 11.32 55.43 0.63 -24.48 16 18 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 22 S 0.29 4.95 19.28 -107.50 -2.07 2.87 16 23 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 27 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 28 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 29 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.39 7.09 8.50 -40.82 -0.35 6.74 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 302.95 15.07 4.57 4.57 Total: -1.00 -31.00 302.95 -8.50 -39.51 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -4.40 Total: 5.43 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -1.97 Total: -16.19 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.33 Total: -39.57 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.06 Total: -12.39 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 4.95 SS G_CDS: -2.07 Total: 2.87 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.00 -8.50 -39.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701294540.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.784 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds