Wall clock time and date at job start Mon Mar 30 2020 06:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33864 * 124.49453 * 2 1 4 4 C 1.37433 * 115.12504 * 180.02562 * 3 2 1 5 5 C 1.37034 * 113.22609 * 0.02562 * 4 3 2 6 6 C 1.41585 * 125.47586 * 179.97438 * 5 4 3 7 7 C 1.35651 * 120.00206 * 224.89896 * 6 5 4 8 8 C 1.41468 * 119.99881 * 10.23793 * 7 6 5 9 9 O 1.21789 * 120.00380 * 6.78768 * 8 7 6 10 10 N 1.34785 * 120.00120 * 186.77845 * 8 7 6 11 11 C 1.46499 * 120.00200 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.46913 * 35.00492 * 11 10 8 13 13 C 1.52998 * 109.47114 * 275.00145 * 11 10 8 14 14 C 1.50703 * 109.46855 * 155.00091 * 11 10 8 15 15 H 1.08002 * 120.00101 * 0.02562 * 14 11 10 16 16 C 1.37876 * 119.99467 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00311 * 359.97438 * 16 14 11 18 18 Si 1.86807 * 119.99659 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.47101 * 59.99494 * 18 16 14 20 20 H 1.48497 * 109.47059 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46683 * 299.99707 * 18 16 14 22 22 S 1.70607 * 124.49281 * 180.27658 * 2 1 3 23 23 H 1.08992 * 109.47675 * 89.99450 * 1 2 3 24 24 H 1.09004 * 109.47045 * 209.99996 * 1 2 3 25 25 H 1.09003 * 109.46824 * 329.99743 * 1 2 3 26 26 H 1.07996 * 122.42972 * 0.02562 * 3 2 1 27 27 H 1.08010 * 123.38101 * 179.97438 * 4 3 2 28 28 H 1.08001 * 119.99538 * 44.90033 * 6 5 4 29 29 H 1.08000 * 119.99829 * 190.24007 * 7 6 5 30 30 H 0.96997 * 119.99409 * 0.02562 * 10 8 7 31 31 H 1.09002 * 109.47131 * 60.00094 * 13 11 10 32 32 H 1.08991 * 109.47116 * 300.00402 * 13 11 10 33 33 H 1.08998 * 109.47031 * 179.97438 * 13 11 10 34 34 H 0.97000 * 120.00091 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2651 1.1033 0.0000 4 6 3.6211 0.8795 -0.0006 5 6 3.9492 -0.4509 -0.0016 6 6 5.2655 -0.9726 -0.0028 7 6 5.5889 -1.9956 -0.8329 8 6 4.6857 -2.3981 -1.8446 9 8 3.6752 -1.7506 -2.0517 10 7 4.9436 -3.4981 -2.5796 11 6 4.0086 -3.9146 -3.6277 12 1 3.5725 -3.0327 -4.0969 13 6 2.8975 -4.7664 -3.0108 14 6 4.7445 -4.7233 -4.6648 15 1 5.8027 -4.9088 -4.5541 16 6 4.0667 -5.2263 -5.7551 17 7 2.7781 -5.0008 -5.8896 18 14 4.9787 -6.2294 -7.0403 19 1 5.5720 -7.4312 -6.4008 20 1 4.0309 -6.6515 -8.1028 21 1 6.0579 -5.4032 -7.6386 22 16 2.4731 -1.4061 -0.0068 23 1 -0.3634 0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8900 0.5139 26 1 1.8418 2.0968 0.0004 27 1 4.3542 1.6727 -0.0010 28 1 6.0120 -0.5559 0.6571 29 1 6.5358 -2.5028 -0.7213 30 1 5.7483 -4.0139 -2.4145 31 1 2.3652 -4.1814 -2.2606 32 1 3.3336 -5.6481 -2.5416 33 1 2.2016 -5.0759 -3.7905 34 1 2.3012 -5.3550 -6.6565 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701294540.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:34 Heat of formation + Delta-G solvation = -2.680952 kcal Electronic energy + Delta-G solvation = -17531.445208 eV Core-core repulsion = 14748.856528 eV Total energy + Delta-G solvation = -2782.588679 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.79952 -38.78583 -36.82454 -34.87784 -34.27975 -32.12594 -30.76740 -27.58500 -27.28858 -24.63912 -23.82967 -22.06856 -20.93804 -20.21814 -18.66541 -17.62608 -17.43839 -16.89289 -16.25639 -15.85159 -15.36517 -15.27002 -14.56914 -14.54869 -14.33041 -13.94899 -13.65625 -13.44338 -13.26234 -12.95231 -12.87777 -12.74156 -12.60219 -12.46050 -12.25688 -12.13949 -11.57781 -11.08813 -10.78495 -10.60158 -10.41372 -9.78383 -8.92165 -8.56037 -8.16407 -6.33883 -0.50390 0.76440 1.09741 1.36623 1.44258 1.46481 1.54234 1.95030 2.38166 2.66634 2.90322 3.14004 4.05639 4.09512 4.26533 4.42033 4.58853 4.68558 4.69643 4.77572 4.79521 4.96054 5.02979 5.08459 5.12985 5.29540 5.37060 5.48975 5.54788 5.65808 5.74538 5.78924 5.98676 6.13449 6.74687 7.08373 7.34404 7.66658 8.89475 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.030776 B = 0.005039 C = 0.004578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.573147 B = 5554.796373 C = 6115.330073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.246 4.246 3 C -0.170 4.170 4 C -0.115 4.115 5 C -0.213 4.213 6 C 0.018 3.982 7 C -0.228 4.228 8 C 0.508 3.492 9 O -0.576 6.576 10 N -0.704 5.704 11 C 0.274 3.726 12 H -0.004 1.004 13 C -0.130 4.130 14 C -0.548 4.548 15 H 0.071 0.929 16 C 0.014 3.986 17 N -0.918 5.918 18 Si 0.972 3.028 19 H -0.264 1.264 20 H -0.286 1.286 21 H -0.271 1.271 22 S 0.225 5.775 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.095 0.905 26 H 0.150 0.850 27 H 0.161 0.839 28 H 0.183 0.817 29 H 0.166 0.834 30 H 0.402 0.598 31 H 0.014 0.986 32 H 0.036 0.964 33 H 0.064 0.936 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.075 7.957 14.354 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.366 4.366 3 C -0.201 4.201 4 C -0.146 4.146 5 C -0.332 4.332 6 C -0.003 4.003 7 C -0.251 4.251 8 C 0.299 3.701 9 O -0.460 6.460 10 N -0.352 5.352 11 C 0.170 3.830 12 H 0.014 0.986 13 C -0.189 4.189 14 C -0.586 4.586 15 H 0.089 0.911 16 C -0.186 4.186 17 N -0.557 5.557 18 Si 0.796 3.204 19 H -0.188 1.188 20 H -0.212 1.212 21 H -0.197 1.197 22 S 0.498 5.502 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.113 0.887 26 H 0.168 0.832 27 H 0.179 0.821 28 H 0.200 0.800 29 H 0.183 0.817 30 H 0.236 0.764 31 H 0.033 0.967 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.834 6.775 14.068 15.721 hybrid contribution 0.679 0.760 -1.130 1.522 sum 2.513 7.535 12.938 15.182 Atomic orbital electron populations 1.20358 0.86831 1.03942 1.02654 1.24602 1.02505 0.98759 1.10698 1.20003 0.93222 0.99456 1.07442 1.20915 0.96642 0.94866 1.02162 1.22736 0.98216 0.97485 1.14722 1.21095 0.92645 0.91572 0.94982 1.22402 1.02513 1.02308 0.97910 1.18008 0.86645 0.81192 0.84288 1.90924 1.29689 1.55414 1.69976 1.46305 1.25885 1.27289 1.35750 1.18235 0.87438 0.92631 0.84664 0.98601 1.21859 0.99807 0.98351 0.98876 1.21554 0.95958 1.34040 1.07069 0.91092 1.25799 0.95635 0.97154 1.00008 1.70052 1.09255 1.45993 1.30360 0.85409 0.78048 0.78941 0.77998 1.18842 1.21153 1.19650 1.83095 0.95491 1.08312 1.63255 0.91563 0.91167 0.88655 0.83237 0.82128 0.80027 0.81694 0.76365 0.96679 0.94471 0.91766 0.92620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.92 10.31 71.23 0.73 -1.18 16 2 C -0.25 -7.47 6.28 24.69 0.15 -7.31 16 3 C -0.17 -4.76 9.99 21.08 0.21 -4.55 16 4 C -0.11 -3.18 10.25 21.80 0.22 -2.95 16 5 C -0.21 -6.54 4.62 22.81 0.11 -6.44 16 6 C 0.02 0.46 9.89 22.50 0.22 0.68 16 7 C -0.23 -6.48 9.81 22.47 0.22 -6.26 16 8 C 0.51 20.43 7.06 85.04 0.60 21.03 16 9 O -0.58 -27.22 11.24 -4.63 -0.05 -27.28 16 10 N -0.70 -29.88 5.06 -455.18 -2.30 -32.19 16 11 C 0.27 14.49 2.56 44.25 0.11 14.60 16 12 H 0.00 -0.25 7.58 -2.39 -0.02 -0.26 16 13 C -0.13 -6.71 9.26 71.98 0.67 -6.04 16 14 C -0.55 -29.56 8.73 25.60 0.22 -29.33 16 15 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 16 C 0.01 0.76 5.30 84.65 0.45 1.21 16 17 N -0.92 -53.53 11.32 21.45 0.24 -53.29 16 18 Si 0.97 42.53 29.54 68.60 2.03 44.56 16 19 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 20 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 S 0.23 7.73 19.28 -56.49 -1.09 6.64 16 23 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 25 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 26 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 27 H 0.16 3.42 8.06 -2.91 -0.02 3.40 16 28 H 0.18 2.75 8.06 -2.91 -0.02 2.72 16 29 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 30 H 0.40 14.40 8.50 -92.71 -0.79 13.61 16 31 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.06 3.63 6.07 -2.39 -0.01 3.61 16 34 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -69.44 302.95 3.07 -66.37 By element: Atomic # 1 Polarization: 21.41 SS G_CDS: 0.32 Total: 21.72 kcal Atomic # 6 Polarization: -30.48 SS G_CDS: 3.92 Total: -26.55 kcal Atomic # 7 Polarization: -83.41 SS G_CDS: -2.06 Total: -85.47 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -0.05 Total: -27.28 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: 7.73 SS G_CDS: -1.09 Total: 6.64 kcal Total: -69.44 3.07 -66.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701294540.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.693 kcal (2) G-P(sol) polarization free energy of solvation -69.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds