Wall clock time and date at job start Mon Mar 30 2020 06:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33855 * 124.48943 * 2 1 4 4 C 1.37433 * 115.12851 * 180.02562 * 3 2 1 5 5 C 1.37052 * 113.21958 * 0.02562 * 4 3 2 6 6 C 1.41582 * 125.47272 * 179.97438 * 5 4 3 7 7 C 1.35652 * 119.99815 * 225.58678 * 6 5 4 8 8 C 1.41483 * 120.00142 * 12.31412 * 7 6 5 9 9 O 1.21794 * 119.99713 * 6.70385 * 8 7 6 10 10 N 1.34768 * 120.00335 * 186.70083 * 8 7 6 11 11 C 1.46501 * 120.00076 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47183 * 324.99892 * 11 10 8 13 13 C 1.52994 * 109.47104 * 85.00361 * 11 10 8 14 14 C 1.50703 * 109.47081 * 205.00213 * 11 10 8 15 15 H 1.07999 * 120.00130 * 359.97438 * 14 11 10 16 16 C 1.37873 * 120.00145 * 180.02562 * 14 11 10 17 17 N 1.31517 * 119.99799 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 120.00181 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47275 * 180.02562 * 18 16 14 20 20 H 1.48506 * 109.47204 * 299.99891 * 18 16 14 21 21 H 1.48504 * 109.47132 * 59.99808 * 18 16 14 22 22 S 1.70606 * 124.49203 * 180.31120 * 2 1 3 23 23 H 1.09004 * 109.46874 * 89.99748 * 1 2 3 24 24 H 1.09004 * 109.47555 * 209.99379 * 1 2 3 25 25 H 1.08993 * 109.47655 * 330.00383 * 1 2 3 26 26 H 1.08000 * 122.44055 * 0.06385 * 3 2 1 27 27 H 1.07999 * 123.39430 * 179.97438 * 4 3 2 28 28 H 1.07997 * 120.00510 * 45.58280 * 6 5 4 29 29 H 1.07995 * 120.00220 * 192.32075 * 7 6 5 30 30 H 0.97004 * 120.00251 * 0.02562 * 10 8 7 31 31 H 1.09003 * 109.47330 * 180.02562 * 13 11 10 32 32 H 1.09002 * 109.47125 * 300.00036 * 13 11 10 33 33 H 1.08997 * 109.47484 * 59.99715 * 13 11 10 34 34 H 0.97001 * 119.99976 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2650 1.1033 0.0000 4 6 3.6210 0.8797 -0.0006 5 6 3.9493 -0.4509 -0.0016 6 6 5.2656 -0.9724 -0.0028 7 6 5.5926 -1.9861 -0.8429 8 6 4.7134 -2.3484 -1.8905 9 8 3.7236 -1.6751 -2.1149 10 7 4.9712 -3.4383 -2.6400 11 6 4.0610 -3.8131 -3.7251 12 1 3.0366 -3.5758 -3.4383 13 6 4.4293 -3.0364 -4.9907 14 6 4.1785 -5.2918 -3.9911 15 1 4.8629 -5.8923 -3.4103 16 6 3.4129 -5.8779 -4.9767 17 7 2.5805 -5.1464 -5.6850 18 14 3.5590 -7.7106 -5.3069 19 1 2.6373 -8.0903 -6.4076 20 1 4.9550 -8.0336 -5.6974 21 1 3.2015 -8.4650 -4.0787 22 16 2.4731 -1.4061 -0.0076 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3634 0.8899 0.5137 26 1 1.8418 2.0969 0.0010 27 1 4.3542 1.6727 -0.0010 28 1 6.0092 -0.5632 0.6649 29 1 6.5241 -2.5167 -0.7119 30 1 5.7593 -3.9748 -2.4610 31 1 3.7519 -3.3149 -5.7980 32 1 4.3444 -1.9669 -4.7983 33 1 5.4538 -3.2737 -5.2775 34 1 2.0416 -5.5588 -6.3781 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701294541.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:36 Heat of formation + Delta-G solvation = 15.502313 kcal Electronic energy + Delta-G solvation = -17501.230883 eV Core-core repulsion = 14719.430689 eV Total energy + Delta-G solvation = -2781.800194 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.24584 -37.58898 -35.02259 -33.57308 -32.36128 -30.90146 -28.96214 -26.32349 -25.21648 -23.34385 -22.50286 -20.32435 -19.44744 -18.86134 -17.07592 -16.03396 -15.95364 -15.24511 -14.74124 -14.25222 -14.00316 -13.83383 -13.44645 -12.99712 -12.79780 -12.38386 -12.30464 -12.14789 -11.68272 -11.51467 -11.43215 -11.04661 -10.93478 -10.71603 -10.37822 -10.28753 -10.20617 -9.47319 -9.01322 -8.98227 -8.53250 -8.17416 -7.60546 -7.28523 -6.09685 -4.18895 0.70095 1.92166 2.27100 2.56330 3.11715 3.26611 3.31833 3.33107 4.11386 4.26566 4.53009 5.12333 5.18018 5.22315 5.40226 5.46376 5.65215 5.66047 5.81323 5.85479 6.06879 6.17713 6.41577 6.51203 6.71253 6.87081 6.90073 7.02194 7.20392 7.52513 7.62120 7.74357 7.96333 8.18810 8.73519 8.82219 9.20540 9.48939 10.96138 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.026893 B = 0.005184 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.902718 B = 5399.629876 C = 5893.380975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.237 4.237 3 C -0.159 4.159 4 C -0.116 4.116 5 C -0.189 4.189 6 C -0.005 4.005 7 C -0.208 4.208 8 C 0.515 3.485 9 O -0.541 6.541 10 N -0.702 5.702 11 C 0.265 3.735 12 H 0.049 0.951 13 C -0.146 4.146 14 C -0.533 4.533 15 H 0.060 0.940 16 C 0.066 3.934 17 N -0.884 5.884 18 Si 0.901 3.099 19 H -0.286 1.286 20 H -0.276 1.276 21 H -0.276 1.276 22 S 0.279 5.721 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.126 0.874 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.387 0.613 31 H 0.089 0.911 32 H 0.014 0.986 33 H 0.024 0.976 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.188 8.279 12.253 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.357 4.357 3 C -0.190 4.190 4 C -0.147 4.147 5 C -0.308 4.308 6 C -0.027 4.027 7 C -0.232 4.232 8 C 0.303 3.697 9 O -0.424 6.424 10 N -0.349 5.349 11 C 0.163 3.837 12 H 0.067 0.933 13 C -0.204 4.204 14 C -0.572 4.572 15 H 0.078 0.922 16 C -0.137 4.137 17 N -0.521 5.521 18 Si 0.728 3.272 19 H -0.211 1.211 20 H -0.202 1.202 21 H -0.202 1.202 22 S 0.552 5.448 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.144 0.856 27 H 0.150 0.850 28 H 0.152 0.848 29 H 0.146 0.854 30 H 0.219 0.781 31 H 0.107 0.893 32 H 0.033 0.967 33 H 0.044 0.956 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.949 7.143 11.892 13.905 hybrid contribution 0.957 0.387 -0.416 1.113 sum 1.906 7.530 11.476 13.858 Atomic orbital electron populations 1.20267 0.88506 1.02326 1.02622 1.24187 1.01149 0.99348 1.11037 1.19609 0.92979 0.98531 1.07924 1.20493 0.95889 0.94600 1.03765 1.22368 0.97826 0.97157 1.13401 1.20559 0.92813 0.93308 0.96032 1.22452 1.02188 1.00718 0.97836 1.17188 0.86129 0.82376 0.83975 1.90923 1.28482 1.52222 1.70730 1.46548 1.27985 1.26200 1.34198 1.18699 0.89598 0.93540 0.81872 0.93285 1.22060 1.00210 0.96295 1.01858 1.21198 1.24430 0.92484 1.19071 0.92217 1.24882 0.94870 0.98415 0.95521 1.69900 1.24627 1.35514 1.22103 0.86525 0.77977 0.84769 0.77912 1.21146 1.20194 1.20189 1.82976 0.93229 1.06068 1.62511 0.90925 0.91787 0.91234 0.85617 0.84950 0.84849 0.85420 0.78073 0.89274 0.96666 0.95637 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.31 36.01 0.37 -0.61 16 2 C -0.24 -3.67 6.28 -35.85 -0.23 -3.90 16 3 C -0.16 -2.36 9.99 -41.41 -0.41 -2.77 16 4 C -0.12 -1.74 10.25 -40.31 -0.41 -2.15 16 5 C -0.19 -3.05 4.52 -38.74 -0.18 -3.22 16 6 C -0.01 -0.07 9.88 -39.23 -0.39 -0.46 16 7 C -0.21 -3.18 9.80 -39.27 -0.38 -3.57 16 8 C 0.52 10.40 7.04 -15.03 -0.11 10.29 16 9 O -0.54 -12.55 11.54 5.10 0.06 -12.50 16 10 N -0.70 -14.87 5.06 -57.87 -0.29 -15.16 16 11 C 0.26 6.81 2.56 -69.08 -0.18 6.63 16 12 H 0.05 1.45 7.57 -51.93 -0.39 1.05 16 13 C -0.15 -3.71 9.26 37.15 0.34 -3.36 16 14 C -0.53 -14.24 8.73 -34.44 -0.30 -14.54 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 17 N -0.88 -25.10 11.32 55.43 0.63 -24.47 16 18 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 S 0.28 4.76 19.57 -107.50 -2.10 2.66 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 27 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 28 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 29 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 30 H 0.39 7.11 8.50 -40.82 -0.35 6.76 16 31 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 LS Contribution 303.39 15.07 4.57 4.57 Total: -1.00 -31.06 303.39 -8.52 -39.59 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.40 Total: 5.57 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -1.96 Total: -15.96 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.33 Total: -39.63 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.06 Total: -12.50 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 4.76 SS G_CDS: -2.10 Total: 2.66 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.06 -8.52 -39.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701294541.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.087 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds