Wall clock time and date at job start Mon Mar 30 2020 06:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33855 * 124.48943 * 2 1 4 4 C 1.37433 * 115.12851 * 180.02562 * 3 2 1 5 5 C 1.37052 * 113.21958 * 0.02562 * 4 3 2 6 6 C 1.41582 * 125.47272 * 179.97438 * 5 4 3 7 7 C 1.35652 * 119.99815 * 225.58678 * 6 5 4 8 8 C 1.41483 * 120.00142 * 12.31412 * 7 6 5 9 9 O 1.21794 * 119.99713 * 6.70385 * 8 7 6 10 10 N 1.34768 * 120.00335 * 186.70083 * 8 7 6 11 11 C 1.46501 * 120.00076 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47183 * 324.99892 * 11 10 8 13 13 C 1.52994 * 109.47104 * 85.00361 * 11 10 8 14 14 C 1.50703 * 109.47081 * 205.00213 * 11 10 8 15 15 H 1.07999 * 120.00130 * 359.97438 * 14 11 10 16 16 C 1.37873 * 120.00145 * 180.02562 * 14 11 10 17 17 N 1.31517 * 119.99799 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 120.00181 * 179.97438 * 16 14 11 19 19 H 1.48499 * 109.47275 * 180.02562 * 18 16 14 20 20 H 1.48506 * 109.47204 * 299.99891 * 18 16 14 21 21 H 1.48504 * 109.47132 * 59.99808 * 18 16 14 22 22 S 1.70606 * 124.49203 * 180.31120 * 2 1 3 23 23 H 1.09004 * 109.46874 * 89.99748 * 1 2 3 24 24 H 1.09004 * 109.47555 * 209.99379 * 1 2 3 25 25 H 1.08993 * 109.47655 * 330.00383 * 1 2 3 26 26 H 1.08000 * 122.44055 * 0.06385 * 3 2 1 27 27 H 1.07999 * 123.39430 * 179.97438 * 4 3 2 28 28 H 1.07997 * 120.00510 * 45.58280 * 6 5 4 29 29 H 1.07995 * 120.00220 * 192.32075 * 7 6 5 30 30 H 0.97004 * 120.00251 * 0.02562 * 10 8 7 31 31 H 1.09003 * 109.47330 * 180.02562 * 13 11 10 32 32 H 1.09002 * 109.47125 * 300.00036 * 13 11 10 33 33 H 1.08997 * 109.47484 * 59.99715 * 13 11 10 34 34 H 0.97001 * 119.99976 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2650 1.1033 0.0000 4 6 3.6210 0.8797 -0.0006 5 6 3.9493 -0.4509 -0.0016 6 6 5.2656 -0.9724 -0.0028 7 6 5.5926 -1.9861 -0.8429 8 6 4.7134 -2.3484 -1.8905 9 8 3.7236 -1.6751 -2.1149 10 7 4.9712 -3.4383 -2.6400 11 6 4.0610 -3.8131 -3.7251 12 1 3.0366 -3.5758 -3.4383 13 6 4.4293 -3.0364 -4.9907 14 6 4.1785 -5.2918 -3.9911 15 1 4.8629 -5.8923 -3.4103 16 6 3.4129 -5.8779 -4.9767 17 7 2.5805 -5.1464 -5.6850 18 14 3.5590 -7.7106 -5.3069 19 1 2.6373 -8.0903 -6.4076 20 1 4.9550 -8.0336 -5.6974 21 1 3.2015 -8.4650 -4.0787 22 16 2.4731 -1.4061 -0.0076 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5137 25 1 -0.3634 0.8899 0.5137 26 1 1.8418 2.0969 0.0010 27 1 4.3542 1.6727 -0.0010 28 1 6.0092 -0.5632 0.6649 29 1 6.5241 -2.5167 -0.7119 30 1 5.7593 -3.9748 -2.4610 31 1 3.7519 -3.3149 -5.7980 32 1 4.3444 -1.9669 -4.7983 33 1 5.4538 -3.2737 -5.2775 34 1 2.0416 -5.5588 -6.3781 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701294541.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:36 Heat of formation + Delta-G solvation = -3.548749 kcal Electronic energy + Delta-G solvation = -17502.056999 eV Core-core repulsion = 14719.430689 eV Total energy + Delta-G solvation = -2782.626310 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.78627 -38.79564 -36.82087 -34.89232 -34.27389 -32.12945 -30.77130 -27.60200 -27.29118 -24.64886 -23.84398 -22.06791 -20.93873 -20.19348 -18.65769 -17.65647 -17.41739 -16.92868 -16.28558 -15.69736 -15.55613 -15.19925 -14.61658 -14.44333 -14.32210 -14.00020 -13.68020 -13.45384 -13.24963 -12.97082 -12.85863 -12.71384 -12.62235 -12.52978 -12.24715 -12.12631 -11.58958 -11.09775 -10.75856 -10.59199 -10.43670 -9.78765 -8.94555 -8.64146 -8.16159 -6.33746 -0.50040 0.73625 1.06317 1.35898 1.44524 1.46684 1.54477 1.94084 2.38563 2.66142 2.90652 3.14112 4.04500 4.08841 4.26450 4.41203 4.58214 4.67740 4.68933 4.76682 4.78317 4.93415 5.01997 5.07797 5.12312 5.28405 5.35722 5.48343 5.53499 5.65768 5.73328 5.78103 5.98098 6.12797 6.74840 7.08710 7.34553 7.67159 8.89717 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.026893 B = 0.005184 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.902718 B = 5399.629876 C = 5893.380975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.241 4.241 3 C -0.166 4.166 4 C -0.115 4.115 5 C -0.205 4.205 6 C 0.017 3.983 7 C -0.227 4.227 8 C 0.509 3.491 9 O -0.578 6.578 10 N -0.705 5.705 11 C 0.274 3.726 12 H -0.001 1.001 13 C -0.131 4.131 14 C -0.547 4.547 15 H 0.071 0.929 16 C 0.014 3.986 17 N -0.919 5.919 18 Si 0.972 3.028 19 H -0.286 1.286 20 H -0.264 1.264 21 H -0.270 1.270 22 S 0.205 5.795 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.096 0.904 26 H 0.152 0.848 27 H 0.163 0.837 28 H 0.184 0.816 29 H 0.166 0.834 30 H 0.402 0.598 31 H 0.064 0.936 32 H 0.009 0.991 33 H 0.037 0.963 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.856 8.689 13.552 16.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.361 4.361 3 C -0.198 4.198 4 C -0.146 4.146 5 C -0.323 4.323 6 C -0.004 4.004 7 C -0.250 4.250 8 C 0.300 3.700 9 O -0.462 6.462 10 N -0.353 5.353 11 C 0.170 3.830 12 H 0.017 0.983 13 C -0.190 4.190 14 C -0.585 4.585 15 H 0.090 0.910 16 C -0.186 4.186 17 N -0.557 5.557 18 Si 0.796 3.204 19 H -0.212 1.212 20 H -0.189 1.189 21 H -0.196 1.196 22 S 0.477 5.523 23 H 0.084 0.916 24 H 0.088 0.912 25 H 0.115 0.885 26 H 0.169 0.831 27 H 0.180 0.820 28 H 0.201 0.799 29 H 0.184 0.816 30 H 0.237 0.763 31 H 0.083 0.917 32 H 0.028 0.972 33 H 0.056 0.944 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.651 7.557 13.221 15.458 hybrid contribution 0.354 0.416 -0.761 0.937 sum 3.005 7.973 12.461 15.095 Atomic orbital electron populations 1.20365 0.86813 1.03971 1.02672 1.24526 1.02431 0.98416 1.10716 1.20025 0.93229 0.99463 1.07058 1.20930 0.96650 0.94852 1.02160 1.22698 0.98029 0.97382 1.14175 1.21107 0.92518 0.91548 0.95223 1.22428 1.02945 1.02380 0.97292 1.17975 0.86158 0.81310 0.84528 1.90918 1.30244 1.53236 1.71762 1.46292 1.28005 1.27283 1.33737 1.18234 0.88146 0.93516 0.83054 0.98341 1.21872 1.00114 0.95790 1.01186 1.21536 1.24644 0.93075 1.19223 0.91049 1.25802 0.94369 1.03164 0.95263 1.70057 1.25465 1.37525 1.22647 0.85409 0.78373 0.78893 0.77721 1.21171 1.18889 1.19557 1.83213 0.95948 1.08732 1.64371 0.91556 0.91230 0.88532 0.83064 0.81991 0.79914 0.81603 0.76350 0.91705 0.97219 0.94411 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.95 10.31 71.24 0.73 -1.21 16 2 C -0.24 -7.39 6.28 24.69 0.15 -7.23 16 3 C -0.17 -4.65 9.99 21.08 0.21 -4.44 16 4 C -0.11 -3.17 10.25 21.80 0.22 -2.95 16 5 C -0.20 -6.30 4.52 22.82 0.10 -6.19 16 6 C 0.02 0.43 9.88 22.50 0.22 0.65 16 7 C -0.23 -6.46 9.80 22.47 0.22 -6.24 16 8 C 0.51 20.57 7.04 85.04 0.60 21.17 16 9 O -0.58 -27.52 11.54 -4.65 -0.05 -27.58 16 10 N -0.70 -30.00 5.06 -455.19 -2.30 -32.30 16 11 C 0.27 14.54 2.56 44.24 0.11 14.65 16 12 H 0.00 -0.08 7.57 -2.39 -0.02 -0.10 16 13 C -0.13 -6.85 9.26 71.98 0.67 -6.19 16 14 C -0.55 -29.43 8.73 25.60 0.22 -29.21 16 15 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 16 C 0.01 0.76 5.30 84.65 0.45 1.21 16 17 N -0.92 -53.56 11.32 21.45 0.24 -53.32 16 18 Si 0.97 42.46 29.54 68.60 2.03 44.48 16 19 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 22 S 0.20 7.15 19.57 -56.49 -1.11 6.04 16 23 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 24 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 25 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 27 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 28 H 0.18 2.74 8.06 -2.91 -0.02 2.71 16 29 H 0.17 3.35 8.06 -2.91 -0.02 3.33 16 30 H 0.40 14.43 8.50 -92.71 -0.79 13.64 16 31 H 0.06 3.70 6.07 -2.39 -0.01 3.69 16 32 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -69.76 303.39 3.04 -66.71 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: 0.32 Total: 21.94 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: 3.92 Total: -25.98 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -2.06 Total: -85.62 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.05 Total: -27.58 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 7.15 SS G_CDS: -1.11 Total: 6.04 kcal Total: -69.76 3.04 -66.71 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701294541.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.163 kcal (2) G-P(sol) polarization free energy of solvation -69.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds