Wall clock time and date at job start Mon Mar 30 2020 06:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33858 * 124.49075 * 2 1 4 4 C 1.37433 * 115.12885 * 179.72241 * 3 2 1 5 5 C 1.37043 * 113.22051 * 0.49333 * 4 3 2 6 6 C 1.41585 * 125.47585 * 179.80000 * 5 4 3 7 7 C 1.35650 * 120.00051 * 179.72189 * 6 5 4 8 8 C 1.41475 * 120.00111 * 180.02562 * 7 6 5 9 9 O 1.21785 * 119.99858 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00138 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00209 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47037 * 35.00527 * 11 10 8 13 13 C 1.52995 * 109.47470 * 275.00444 * 11 10 8 14 14 C 1.50709 * 109.47337 * 155.00067 * 11 10 8 15 15 H 1.08003 * 119.99446 * 0.02562 * 14 11 10 16 16 C 1.37874 * 120.00168 * 180.02562 * 14 11 10 17 17 N 1.31515 * 119.99821 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00064 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.46833 * 59.99761 * 18 16 14 20 20 H 1.48496 * 109.46968 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47103 * 299.99990 * 18 16 14 22 22 S 1.70606 * 124.49323 * 179.97438 * 2 1 3 23 23 H 1.08996 * 109.46899 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46929 * 299.97697 * 1 2 3 25 25 H 1.08998 * 109.46578 * 59.98107 * 1 2 3 26 26 H 1.08008 * 122.43900 * 359.97438 * 3 2 1 27 27 H 1.08004 * 123.39171 * 180.29481 * 4 3 2 28 28 H 1.08000 * 119.99562 * 359.71798 * 6 5 4 29 29 H 1.07996 * 119.99660 * 359.97438 * 7 6 5 30 30 H 0.97005 * 119.99960 * 0.02562 * 10 8 7 31 31 H 1.08998 * 109.47069 * 59.99643 * 13 11 10 32 32 H 1.09002 * 109.47224 * 179.97438 * 13 11 10 33 33 H 1.09005 * 109.46876 * 299.99773 * 13 11 10 34 34 H 0.97003 * 119.99666 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2651 1.1033 0.0000 4 6 3.6211 0.8797 0.0060 5 6 3.9494 -0.4508 0.0001 6 6 5.2657 -0.9724 0.0002 7 6 5.4635 -2.3144 -0.0003 8 6 6.7787 -2.8355 0.0003 9 8 7.7333 -2.0793 0.0009 10 7 6.9753 -4.1688 0.0004 11 6 8.3372 -4.7085 0.0004 12 1 8.9850 -4.0598 0.5900 13 6 8.8578 -4.7795 -1.4364 14 6 8.3298 -6.0908 0.6009 15 1 7.4031 -6.5240 0.9474 16 6 9.5060 -6.8022 0.7080 17 7 10.6342 -6.2748 0.2855 18 14 9.4967 -8.5158 1.4516 19 1 8.6147 -9.3995 0.6476 20 1 10.8773 -9.0627 1.4518 21 1 8.9906 -8.4475 2.8460 22 16 2.4732 -1.4061 0.0006 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5135 0.8902 25 1 -0.3632 0.5141 -0.8898 26 1 1.8418 2.0970 -0.0004 27 1 4.3543 1.6728 0.0114 28 1 6.1122 -0.3017 0.0006 29 1 4.6169 -2.9849 -0.0003 30 1 6.2149 -4.7712 -0.0004 31 1 8.8631 -3.7797 -1.8707 32 1 9.8713 -5.1806 -1.4363 33 1 8.2099 -5.4283 -2.0260 34 1 11.4617 -6.7755 0.3605 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701294542.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:37 Heat of formation + Delta-G solvation = -1.655337 kcal Electronic energy + Delta-G solvation = -16624.942665 eV Core-core repulsion = 13842.398459 eV Total energy + Delta-G solvation = -2782.544205 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.11793 -38.22165 -35.01901 -34.10141 -32.35517 -31.25560 -29.06132 -26.78349 -25.22457 -23.80521 -22.59174 -20.40421 -19.49336 -19.18089 -17.22061 -16.64625 -15.98815 -15.19905 -15.13736 -14.38645 -14.32020 -14.00988 -13.66425 -13.24237 -13.04833 -12.66478 -12.42932 -12.33331 -12.18726 -11.71843 -11.65992 -11.07147 -10.94881 -10.84138 -10.72579 -10.31914 -10.20816 -10.13685 -9.11564 -9.02012 -8.70826 -8.52395 -8.07618 -7.74393 -6.09652 -4.18961 0.18655 1.40549 1.83347 1.83937 2.77348 3.27421 3.32414 3.33847 4.08567 4.22274 4.44889 4.58721 4.92150 5.02104 5.19396 5.22037 5.22461 5.27397 5.37700 5.60881 5.75099 5.84301 6.07249 6.18509 6.46034 6.46660 6.87285 7.00784 7.18963 7.50039 7.60548 7.73270 7.95344 8.18077 8.70437 8.80912 9.16591 9.48543 10.96390 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.039392 B = 0.003450 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.636272 B = 8115.098519 C = 8617.429971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.220 4.220 3 C -0.148 4.148 4 C -0.108 4.108 5 C -0.183 4.183 6 C -0.008 4.008 7 C -0.196 4.196 8 C 0.532 3.468 9 O -0.562 6.562 10 N -0.703 5.703 11 C 0.263 3.737 12 H 0.049 0.951 13 C -0.146 4.146 14 C -0.535 4.535 15 H 0.061 0.939 16 C 0.066 3.934 17 N -0.884 5.884 18 Si 0.902 3.098 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.276 1.276 22 S 0.192 5.808 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.137 0.863 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.117 0.883 30 H 0.389 0.611 31 H 0.015 0.985 32 H 0.090 0.910 33 H 0.026 0.974 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.130 11.009 -1.177 22.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.339 4.339 3 C -0.178 4.178 4 C -0.138 4.138 5 C -0.300 4.300 6 C -0.030 4.030 7 C -0.220 4.220 8 C 0.320 3.680 9 O -0.444 6.444 10 N -0.349 5.349 11 C 0.161 3.839 12 H 0.067 0.933 13 C -0.205 4.205 14 C -0.573 4.573 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.521 5.521 18 Si 0.729 3.271 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.202 1.202 22 S 0.460 5.540 23 H 0.085 0.915 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.155 0.845 27 H 0.164 0.836 28 H 0.164 0.836 29 H 0.135 0.865 30 H 0.221 0.779 31 H 0.034 0.966 32 H 0.109 0.891 33 H 0.045 0.955 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.568 9.912 -1.191 21.081 hybrid contribution -0.077 0.325 0.368 0.497 sum -18.645 10.237 -0.823 21.286 Atomic orbital electron populations 1.20325 0.87841 1.02884 1.02950 1.24163 1.01336 0.98203 1.10234 1.19854 0.92940 0.99242 1.05808 1.20884 0.96268 0.95204 1.01489 1.22662 0.97110 0.96853 1.13385 1.20662 0.93483 0.95778 0.93088 1.22288 0.97907 0.95859 1.05948 1.16910 0.88918 0.83615 0.78527 1.90786 1.43719 1.58142 1.51789 1.46502 1.11659 1.05446 1.71304 1.18744 0.77405 0.93748 0.94005 0.93268 1.22072 1.03742 0.97359 0.97346 1.21201 0.94479 1.00143 1.41488 0.92122 1.24891 0.95259 0.98390 0.95181 1.69899 0.98642 1.37745 1.45848 0.86501 0.77155 0.83726 0.79673 1.20160 1.21127 1.20168 1.83135 0.94786 1.07547 1.68509 0.91478 0.90614 0.90617 0.84519 0.83573 0.83638 0.86497 0.77865 0.96605 0.89143 0.95488 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.33 36.01 0.37 -0.17 16 2 C -0.22 -2.09 6.28 -35.84 -0.23 -2.31 16 3 C -0.15 -1.42 9.99 -41.41 -0.41 -1.83 16 4 C -0.11 -1.16 10.25 -40.31 -0.41 -1.58 16 5 C -0.18 -2.27 6.21 -38.74 -0.24 -2.51 16 6 C -0.01 -0.12 9.37 -39.23 -0.37 -0.49 16 7 C -0.20 -3.16 9.30 -39.28 -0.37 -3.53 16 8 C 0.53 11.17 7.52 -15.03 -0.11 11.05 16 9 O -0.56 -13.90 15.77 5.11 0.08 -13.82 16 10 N -0.70 -15.26 5.06 -57.88 -0.29 -15.55 16 11 C 0.26 6.88 2.56 -69.08 -0.18 6.70 16 12 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 13 C -0.15 -3.75 9.26 37.16 0.34 -3.40 16 14 C -0.53 -14.44 8.73 -34.44 -0.30 -14.75 16 15 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 16 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 17 N -0.88 -25.25 11.32 55.43 0.63 -24.62 16 18 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 19 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 S 0.19 2.04 21.69 -107.50 -2.33 -0.29 16 23 H 0.07 0.40 8.11 -51.93 -0.42 -0.02 16 24 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.14 1.02 8.06 -52.48 -0.42 0.59 16 27 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 28 H 0.15 2.20 7.46 -52.49 -0.39 1.81 16 29 H 0.12 1.59 7.04 -52.49 -0.37 1.22 16 30 H 0.39 7.28 8.50 -40.82 -0.35 6.93 16 31 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 309.27 15.07 4.66 4.66 Total: -1.00 -31.42 309.27 -8.59 -40.01 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -4.32 Total: 4.90 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -1.99 Total: -11.10 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.33 Total: -40.17 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: 0.08 Total: -13.82 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.33 Total: -0.29 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.42 -8.59 -40.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701294542.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.352 kcal (2) G-P(sol) polarization free energy of solvation -31.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds