Wall clock time and date at job start Mon Mar 30 2020 06:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.33858 * 124.49075 * 2 1 4 4 C 1.37433 * 115.12885 * 179.72241 * 3 2 1 5 5 C 1.37043 * 113.22051 * 0.49333 * 4 3 2 6 6 C 1.41585 * 125.47585 * 179.80000 * 5 4 3 7 7 C 1.35650 * 120.00051 * 179.72189 * 6 5 4 8 8 C 1.41475 * 120.00111 * 180.02562 * 7 6 5 9 9 O 1.21785 * 119.99858 * 359.97438 * 8 7 6 10 10 N 1.34768 * 120.00138 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00209 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47037 * 35.00527 * 11 10 8 13 13 C 1.52995 * 109.47470 * 275.00444 * 11 10 8 14 14 C 1.50709 * 109.47337 * 155.00067 * 11 10 8 15 15 H 1.08003 * 119.99446 * 0.02562 * 14 11 10 16 16 C 1.37874 * 120.00168 * 180.02562 * 14 11 10 17 17 N 1.31515 * 119.99821 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00064 * 180.02562 * 16 14 11 19 19 H 1.48503 * 109.46833 * 59.99761 * 18 16 14 20 20 H 1.48496 * 109.46968 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47103 * 299.99990 * 18 16 14 22 22 S 1.70606 * 124.49323 * 179.97438 * 2 1 3 23 23 H 1.08996 * 109.46899 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46929 * 299.97697 * 1 2 3 25 25 H 1.08998 * 109.46578 * 59.98107 * 1 2 3 26 26 H 1.08008 * 122.43900 * 359.97438 * 3 2 1 27 27 H 1.08004 * 123.39171 * 180.29481 * 4 3 2 28 28 H 1.08000 * 119.99562 * 359.71798 * 6 5 4 29 29 H 1.07996 * 119.99660 * 359.97438 * 7 6 5 30 30 H 0.97005 * 119.99960 * 0.02562 * 10 8 7 31 31 H 1.08998 * 109.47069 * 59.99643 * 13 11 10 32 32 H 1.09002 * 109.47224 * 179.97438 * 13 11 10 33 33 H 1.09005 * 109.46876 * 299.99773 * 13 11 10 34 34 H 0.97003 * 119.99666 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2651 1.1033 0.0000 4 6 3.6211 0.8797 0.0060 5 6 3.9494 -0.4508 0.0001 6 6 5.2657 -0.9724 0.0002 7 6 5.4635 -2.3144 -0.0003 8 6 6.7787 -2.8355 0.0003 9 8 7.7333 -2.0793 0.0009 10 7 6.9753 -4.1688 0.0004 11 6 8.3372 -4.7085 0.0004 12 1 8.9850 -4.0598 0.5900 13 6 8.8578 -4.7795 -1.4364 14 6 8.3298 -6.0908 0.6009 15 1 7.4031 -6.5240 0.9474 16 6 9.5060 -6.8022 0.7080 17 7 10.6342 -6.2748 0.2855 18 14 9.4967 -8.5158 1.4516 19 1 8.6147 -9.3995 0.6476 20 1 10.8773 -9.0627 1.4518 21 1 8.9906 -8.4475 2.8460 22 16 2.4732 -1.4061 0.0006 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5135 0.8902 25 1 -0.3632 0.5141 -0.8898 26 1 1.8418 2.0970 -0.0004 27 1 4.3543 1.6728 0.0114 28 1 6.1122 -0.3017 0.0006 29 1 4.6169 -2.9849 -0.0003 30 1 6.2149 -4.7712 -0.0004 31 1 8.8631 -3.7797 -1.8707 32 1 9.8713 -5.1806 -1.4363 33 1 8.2099 -5.4283 -2.0260 34 1 11.4617 -6.7755 0.3605 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701294542.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:37 Heat of formation + Delta-G solvation = -21.063839 kcal Electronic energy + Delta-G solvation = -16625.784281 eV Core-core repulsion = 13842.398459 eV Total energy + Delta-G solvation = -2783.385821 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.76255 -39.10139 -36.84530 -35.31337 -34.32256 -32.22295 -30.85588 -27.85712 -27.33123 -24.76942 -23.81555 -22.12644 -20.93654 -20.32359 -18.82381 -17.75426 -17.56200 -16.97918 -16.24201 -16.04021 -15.77665 -15.00121 -14.93239 -14.49457 -14.34341 -13.88727 -13.75492 -13.44822 -13.37152 -13.05801 -12.95716 -12.86469 -12.73085 -12.47326 -12.27671 -12.15255 -11.68050 -11.19903 -11.11998 -10.87411 -10.58948 -9.78950 -9.52052 -8.90692 -8.17595 -6.35710 -0.81768 0.57038 0.80759 1.01954 1.44828 1.47589 1.55435 1.83175 2.37303 2.56674 2.76362 3.12585 3.89425 3.94850 4.08083 4.30830 4.38010 4.48146 4.71113 4.74428 4.75808 4.91327 4.96583 5.08192 5.10436 5.16981 5.24020 5.35398 5.45917 5.55033 5.60745 5.69571 5.92263 6.09122 6.71657 6.96719 7.31632 7.54824 8.88867 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.039392 B = 0.003450 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.636272 B = 8115.098519 C = 8617.429971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.202 4.202 3 C -0.164 4.164 4 C -0.085 4.085 5 C -0.234 4.234 6 C 0.031 3.969 7 C -0.233 4.233 8 C 0.533 3.467 9 O -0.612 6.612 10 N -0.702 5.702 11 C 0.269 3.731 12 H -0.002 1.002 13 C -0.133 4.133 14 C -0.550 4.550 15 H 0.073 0.927 16 C 0.013 3.987 17 N -0.918 5.918 18 Si 0.975 3.025 19 H -0.263 1.263 20 H -0.285 1.285 21 H -0.270 1.270 22 S 0.198 5.802 23 H 0.073 0.927 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.164 0.836 27 H 0.161 0.839 28 H 0.133 0.867 29 H 0.142 0.858 30 H 0.405 0.595 31 H 0.011 0.989 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.453 11.223 -0.940 25.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.322 4.322 3 C -0.194 4.194 4 C -0.117 4.117 5 C -0.350 4.350 6 C 0.010 3.990 7 C -0.256 4.256 8 C 0.325 3.675 9 O -0.498 6.498 10 N -0.350 5.350 11 C 0.165 3.835 12 H 0.016 0.984 13 C -0.192 4.192 14 C -0.589 4.589 15 H 0.092 0.908 16 C -0.187 4.187 17 N -0.556 5.556 18 Si 0.799 3.201 19 H -0.188 1.188 20 H -0.211 1.211 21 H -0.195 1.195 22 S 0.467 5.533 23 H 0.092 0.908 24 H 0.110 0.890 25 H 0.110 0.890 26 H 0.181 0.819 27 H 0.178 0.822 28 H 0.151 0.849 29 H 0.160 0.840 30 H 0.240 0.760 31 H 0.030 0.970 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.934 10.108 -0.959 24.170 hybrid contribution 0.759 0.520 0.291 0.965 sum -21.175 10.628 -0.668 23.702 Atomic orbital electron populations 1.20505 0.85517 1.03930 1.04444 1.24710 1.02910 0.97520 1.07025 1.20144 0.92297 1.00643 1.06285 1.21265 0.97488 0.94889 0.98058 1.22576 0.96753 0.98047 1.17673 1.20690 0.94511 0.95020 0.88815 1.21916 0.95741 0.96743 1.11212 1.17555 0.90328 0.82827 0.76796 1.90748 1.45765 1.59027 1.54271 1.46237 1.10454 1.06262 1.72002 1.18353 0.78928 0.92869 0.93311 0.98409 1.21897 1.02717 0.97158 0.97426 1.21536 0.95229 1.00378 1.41709 0.90848 1.25843 0.94735 1.02659 0.95431 1.70055 0.99314 1.39445 1.46827 0.85350 0.77261 0.78489 0.78952 1.18760 1.21052 1.19531 1.83132 0.94030 1.08027 1.68127 0.90768 0.89022 0.88991 0.81891 0.82153 0.84894 0.84013 0.76013 0.96999 0.91331 0.94059 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 10.33 71.24 0.74 -0.04 16 2 C -0.20 -3.12 6.28 24.69 0.16 -2.97 16 3 C -0.16 -2.56 9.99 21.08 0.21 -2.35 16 4 C -0.09 -1.63 10.25 21.80 0.22 -1.40 16 5 C -0.23 -5.48 6.21 22.81 0.14 -5.34 16 6 C 0.03 0.92 9.37 22.50 0.21 1.13 16 7 C -0.23 -7.61 9.30 22.47 0.21 -7.40 16 8 C 0.53 23.30 7.52 85.04 0.64 23.94 16 9 O -0.61 -32.06 15.77 -4.62 -0.07 -32.13 16 10 N -0.70 -31.41 5.06 -455.21 -2.30 -33.71 16 11 C 0.27 14.66 2.56 44.25 0.11 14.78 16 12 H 0.00 -0.13 7.58 -2.39 -0.02 -0.15 16 13 C -0.13 -7.06 9.26 71.98 0.67 -6.40 16 14 C -0.55 -30.13 8.73 25.60 0.22 -29.91 16 15 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 16 C 0.01 0.73 5.30 84.65 0.45 1.18 16 17 N -0.92 -53.88 11.32 21.45 0.24 -53.64 16 18 Si 0.98 42.68 29.54 68.60 2.03 44.70 16 19 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 20 H -0.29 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 S 0.20 3.78 21.69 -56.49 -1.23 2.56 16 23 H 0.07 0.60 8.11 -2.39 -0.02 0.58 16 24 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 27 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 28 H 0.13 4.15 7.46 -2.91 -0.02 4.12 16 29 H 0.14 3.78 7.04 -2.91 -0.02 3.76 16 30 H 0.40 15.25 8.50 -92.70 -0.79 14.47 16 31 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 3.93 6.07 -2.39 -0.01 3.92 16 33 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -70.30 309.27 2.97 -67.34 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.32 Total: 19.67 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 3.98 Total: -14.78 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -2.06 Total: -87.35 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -0.07 Total: -32.13 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -1.23 Total: 2.56 kcal Total: -70.30 2.97 -67.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701294542.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.272 kcal (2) G-P(sol) polarization free energy of solvation -70.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds