Wall clock time and date at job start Mon Mar 30 2020 06:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33859 * 124.49137 * 2 1 4 4 C 1.37430 * 115.13202 * 180.02562 * 3 2 1 5 5 C 1.37039 * 113.22011 * 359.97438 * 4 3 2 6 6 C 1.41584 * 125.47567 * 179.97438 * 5 4 3 7 7 C 1.35654 * 119.99772 * 136.21689 * 6 5 4 8 8 C 1.41472 * 120.00366 * 348.63336 * 7 6 5 9 9 O 1.21796 * 119.99791 * 353.22191 * 8 7 6 10 10 N 1.34775 * 120.00320 * 173.22523 * 8 7 6 11 11 C 1.46505 * 120.00214 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47107 * 179.72267 * 11 10 8 13 13 C 1.50708 * 109.46913 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99986 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99775 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00150 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99675 * 179.97438 * 15 13 12 18 18 H 1.48491 * 109.46953 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.46797 * 119.99633 * 17 15 13 20 20 H 1.48503 * 109.46712 * 239.99399 * 17 15 13 21 21 S 1.70609 * 124.49584 * 180.31660 * 2 1 3 22 22 H 1.08996 * 109.47459 * 89.99912 * 1 2 3 23 23 H 1.09006 * 109.46806 * 209.99668 * 1 2 3 24 24 H 1.08997 * 109.47520 * 329.99440 * 1 2 3 25 25 H 1.07999 * 122.43230 * 0.06399 * 3 2 1 26 26 H 1.07998 * 123.39103 * 179.97438 * 4 3 2 27 27 H 1.07996 * 120.00205 * 316.21769 * 6 5 4 28 28 H 1.08003 * 120.00021 * 168.63560 * 7 6 5 29 29 H 0.96992 * 120.00158 * 359.71930 * 10 8 7 30 30 H 1.09004 * 109.46878 * 299.72268 * 11 10 8 31 31 H 1.09000 * 109.46940 * 59.71806 * 11 10 8 32 32 H 1.08999 * 109.46824 * 299.99580 * 12 11 10 33 33 H 1.08994 * 109.47176 * 60.00117 * 12 11 10 34 34 H 0.96998 * 119.99705 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2650 1.1033 0.0000 4 6 3.6210 0.8798 -0.0006 5 6 3.9493 -0.4507 -0.0005 6 6 5.2656 -0.9722 -0.0014 7 6 5.5844 -2.0104 0.8115 8 6 4.6859 -2.4161 1.8261 9 8 3.6850 -1.7597 2.0514 10 7 4.9375 -3.5290 2.5435 11 6 4.0068 -3.9495 3.5939 12 6 4.5193 -5.2360 4.2444 13 6 3.5616 -5.6688 5.3245 14 1 2.6761 -5.0845 5.5270 15 6 3.8163 -6.8102 6.0547 16 7 4.8948 -7.5215 5.8085 17 14 2.6294 -7.3463 7.3940 18 1 1.5032 -6.3818 7.4724 19 1 2.1029 -8.6981 7.0766 20 1 3.3393 -7.3851 8.6978 21 16 2.4732 -1.4061 -0.0078 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3634 0.8899 0.5139 25 1 1.8417 2.0969 0.0010 26 1 4.3541 1.6728 -0.0010 27 1 6.0158 -0.5436 -0.6494 28 1 6.5242 -2.5272 0.6841 29 1 5.7325 -4.0540 2.3615 30 1 3.9319 -3.1659 4.3480 31 1 3.0241 -4.1292 3.1579 32 1 4.5942 -6.0195 3.4903 33 1 5.5020 -5.0562 4.6803 34 1 5.0737 -8.3246 6.3220 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701294598.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:30 Heat of formation + Delta-G solvation = 8.995372 kcal Electronic energy + Delta-G solvation = -16917.333816 eV Core-core repulsion = 14135.251460 eV Total energy + Delta-G solvation = -2782.082356 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.60285 -37.80481 -35.08292 -33.83840 -32.83792 -31.15373 -29.64246 -26.78330 -24.82456 -23.29391 -22.36202 -20.81276 -19.81317 -19.03101 -16.99992 -16.48694 -16.10236 -15.31161 -14.91819 -14.67106 -14.34437 -14.22469 -13.67362 -13.30582 -13.02336 -12.96537 -12.49781 -12.29279 -12.25953 -11.74415 -11.64253 -11.17472 -11.04825 -10.61729 -10.60320 -10.32457 -9.85665 -9.60505 -9.41650 -9.17428 -8.63612 -8.40692 -7.89619 -7.52051 -6.08897 -4.11484 0.44596 1.72647 2.06760 2.33735 2.91711 3.28487 3.36027 3.41132 3.74029 3.94297 4.43365 4.94005 4.97822 5.17166 5.27673 5.28301 5.45071 5.47955 5.60895 5.63911 5.89376 5.97225 6.13456 6.29940 6.38507 6.44182 6.52832 6.69469 6.77311 6.98711 7.53893 7.63504 7.89867 8.08903 8.29489 8.72392 8.94971 9.53403 11.02809 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.028473 B = 0.004027 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.152807 B = 6951.330830 C = 7697.677855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.235 4.235 3 C -0.160 4.160 4 C -0.111 4.111 5 C -0.199 4.199 6 C 0.007 3.993 7 C -0.216 4.216 8 C 0.520 3.480 9 O -0.537 6.537 10 N -0.716 5.716 11 C 0.123 3.877 12 C 0.011 3.989 13 C -0.520 4.520 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.896 3.104 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 S 0.281 5.719 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.128 0.872 26 H 0.135 0.865 27 H 0.137 0.863 28 H 0.132 0.868 29 H 0.396 0.604 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 13.701 -14.869 20.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.355 4.355 3 C -0.191 4.191 4 C -0.142 4.142 5 C -0.317 4.317 6 C -0.015 4.015 7 C -0.240 4.240 8 C 0.309 3.691 9 O -0.419 6.419 10 N -0.365 5.365 11 C 0.000 4.000 12 C -0.026 4.026 13 C -0.559 4.559 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.723 3.277 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 S 0.553 5.447 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.146 0.854 26 H 0.153 0.847 27 H 0.155 0.845 28 H 0.150 0.850 29 H 0.230 0.770 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.228 12.421 -14.635 19.324 hybrid contribution 0.337 0.964 0.904 1.363 sum -1.891 13.385 -13.731 19.268 Atomic orbital electron populations 1.20284 0.88374 1.03074 1.02138 1.24246 1.01255 0.99344 1.10654 1.19651 0.92963 0.98680 1.07852 1.20542 0.95981 0.94629 1.03043 1.22399 0.97859 0.97230 1.14253 1.20617 0.92870 0.92731 0.95272 1.22314 1.02169 1.00952 0.98561 1.17260 0.86259 0.81792 0.83761 1.90950 1.28218 1.54170 1.68552 1.46349 1.27250 1.25986 1.36892 1.21680 0.91847 0.98542 0.87922 1.19332 0.97194 0.90384 0.95688 1.21098 1.08035 1.09126 1.17613 0.92236 1.24995 0.95464 0.96404 0.97429 1.69967 1.25913 1.16457 1.41013 0.86472 0.81091 0.78538 0.81564 1.19591 1.20925 1.20936 1.82906 0.93170 1.06173 1.62414 0.91251 0.91410 0.90996 0.85436 0.84744 0.84539 0.84997 0.77021 0.92632 0.92589 0.95979 0.95989 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.31 36.00 0.37 -0.48 16 2 C -0.23 -3.16 6.28 -35.85 -0.23 -3.39 16 3 C -0.16 -2.07 9.99 -41.41 -0.41 -2.49 16 4 C -0.11 -1.44 10.25 -40.31 -0.41 -1.85 16 5 C -0.20 -2.78 4.60 -38.74 -0.18 -2.96 16 6 C 0.01 0.08 9.88 -39.23 -0.39 -0.31 16 7 C -0.22 -2.79 9.81 -39.28 -0.39 -3.18 16 8 C 0.52 8.89 7.07 -15.03 -0.11 8.78 16 9 O -0.54 -10.65 11.68 5.10 0.06 -10.59 16 10 N -0.72 -12.66 5.55 -63.26 -0.35 -13.01 16 11 C 0.12 2.63 5.61 -4.04 -0.02 2.61 16 12 C 0.01 0.29 5.09 -27.88 -0.14 0.14 16 13 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 14 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 17 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 S 0.28 4.12 19.34 -107.50 -2.08 2.04 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 26 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 27 H 0.14 1.13 8.06 -52.49 -0.42 0.70 16 28 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 29 H 0.40 6.07 8.43 -40.82 -0.34 5.73 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 307.87 15.07 4.64 4.64 Total: -1.00 -32.06 307.87 -8.87 -40.93 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.54 Total: 1.44 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: -2.31 Total: -16.39 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.39 Total: -38.51 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.06 Total: -10.59 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -2.08 Total: 2.04 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.06 -8.87 -40.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701294598.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.923 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds