Wall clock time and date at job start Mon Mar 30 2020 06:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33859 * 124.49137 * 2 1 4 4 C 1.37430 * 115.13202 * 180.02562 * 3 2 1 5 5 C 1.37039 * 113.22011 * 359.97438 * 4 3 2 6 6 C 1.41584 * 125.47567 * 179.97438 * 5 4 3 7 7 C 1.35654 * 119.99772 * 136.21689 * 6 5 4 8 8 C 1.41472 * 120.00366 * 348.63336 * 7 6 5 9 9 O 1.21796 * 119.99791 * 353.22191 * 8 7 6 10 10 N 1.34775 * 120.00320 * 173.22523 * 8 7 6 11 11 C 1.46505 * 120.00214 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47107 * 179.72267 * 11 10 8 13 13 C 1.50708 * 109.46913 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99986 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99775 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00150 * 359.97438 * 15 13 12 17 17 Si 1.86807 * 119.99675 * 179.97438 * 15 13 12 18 18 H 1.48491 * 109.46953 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.46797 * 119.99633 * 17 15 13 20 20 H 1.48503 * 109.46712 * 239.99399 * 17 15 13 21 21 S 1.70609 * 124.49584 * 180.31660 * 2 1 3 22 22 H 1.08996 * 109.47459 * 89.99912 * 1 2 3 23 23 H 1.09006 * 109.46806 * 209.99668 * 1 2 3 24 24 H 1.08997 * 109.47520 * 329.99440 * 1 2 3 25 25 H 1.07999 * 122.43230 * 0.06399 * 3 2 1 26 26 H 1.07998 * 123.39103 * 179.97438 * 4 3 2 27 27 H 1.07996 * 120.00205 * 316.21769 * 6 5 4 28 28 H 1.08003 * 120.00021 * 168.63560 * 7 6 5 29 29 H 0.96992 * 120.00158 * 359.71930 * 10 8 7 30 30 H 1.09004 * 109.46878 * 299.72268 * 11 10 8 31 31 H 1.09000 * 109.46940 * 59.71806 * 11 10 8 32 32 H 1.08999 * 109.46824 * 299.99580 * 12 11 10 33 33 H 1.08994 * 109.47176 * 60.00117 * 12 11 10 34 34 H 0.96998 * 119.99705 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2650 1.1033 0.0000 4 6 3.6210 0.8798 -0.0006 5 6 3.9493 -0.4507 -0.0005 6 6 5.2656 -0.9722 -0.0014 7 6 5.5844 -2.0104 0.8115 8 6 4.6859 -2.4161 1.8261 9 8 3.6850 -1.7597 2.0514 10 7 4.9375 -3.5290 2.5435 11 6 4.0068 -3.9495 3.5939 12 6 4.5193 -5.2360 4.2444 13 6 3.5616 -5.6688 5.3245 14 1 2.6761 -5.0845 5.5270 15 6 3.8163 -6.8102 6.0547 16 7 4.8948 -7.5215 5.8085 17 14 2.6294 -7.3463 7.3940 18 1 1.5032 -6.3818 7.4724 19 1 2.1029 -8.6981 7.0766 20 1 3.3393 -7.3851 8.6978 21 16 2.4732 -1.4061 -0.0078 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8901 0.5138 24 1 -0.3634 0.8899 0.5139 25 1 1.8417 2.0969 0.0010 26 1 4.3541 1.6728 -0.0010 27 1 6.0158 -0.5436 -0.6494 28 1 6.5242 -2.5272 0.6841 29 1 5.7325 -4.0540 2.3615 30 1 3.9319 -3.1659 4.3480 31 1 3.0241 -4.1292 3.1579 32 1 4.5942 -6.0195 3.4903 33 1 5.5020 -5.0562 4.6803 34 1 5.0737 -8.3246 6.3220 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701294598.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:30 Heat of formation + Delta-G solvation = -10.666892 kcal Electronic energy + Delta-G solvation = -16918.186436 eV Core-core repulsion = 14135.251460 eV Total energy + Delta-G solvation = -2782.934976 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.91757 -38.82501 -36.69491 -35.01818 -34.74584 -32.27699 -31.33690 -28.00690 -26.53598 -24.40160 -23.67968 -22.53897 -20.99271 -20.14319 -18.60437 -18.01678 -17.37566 -16.62051 -16.52297 -16.31674 -15.75737 -15.28533 -14.84127 -14.59885 -14.47322 -14.17126 -13.99934 -13.43616 -13.27118 -13.19566 -12.97034 -12.69686 -12.59793 -12.50780 -12.22994 -11.64118 -11.62279 -11.43305 -10.85334 -10.61602 -10.54574 -10.01920 -8.99538 -8.64853 -8.24818 -6.35335 -0.57502 0.71517 1.03934 1.30835 1.40084 1.40929 1.54208 1.90448 2.35835 2.52378 2.62052 3.09821 4.01468 4.04693 4.16122 4.40000 4.51202 4.51585 4.56766 4.67912 4.69332 4.75858 4.86884 5.00019 5.07770 5.27030 5.32360 5.36460 5.50245 5.54971 5.58565 5.74072 5.80277 6.16464 6.74717 6.78498 7.34155 7.39310 8.87289 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.028473 B = 0.004027 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.152807 B = 6951.330830 C = 7697.677855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.239 4.239 3 C -0.170 4.170 4 C -0.111 4.111 5 C -0.215 4.215 6 C 0.026 3.974 7 C -0.233 4.233 8 C 0.516 3.484 9 O -0.568 6.568 10 N -0.716 5.716 11 C 0.145 3.855 12 C 0.022 3.978 13 C -0.546 4.546 14 H 0.057 0.943 15 C 0.008 3.992 16 N -0.927 5.927 17 Si 0.965 3.035 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.276 1.276 21 S 0.219 5.781 22 H 0.088 0.912 23 H 0.060 0.940 24 H 0.085 0.915 25 H 0.150 0.850 26 H 0.162 0.838 27 H 0.182 0.818 28 H 0.166 0.834 29 H 0.408 0.592 30 H 0.041 0.959 31 H 0.044 0.956 32 H 0.008 0.992 33 H 0.007 0.993 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.037 15.039 -15.466 21.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.359 4.359 3 C -0.201 4.201 4 C -0.142 4.142 5 C -0.333 4.333 6 C 0.004 3.996 7 C -0.257 4.257 8 C 0.308 3.692 9 O -0.451 6.451 10 N -0.367 5.367 11 C 0.021 3.979 12 C -0.015 4.015 13 C -0.584 4.584 14 H 0.075 0.925 15 C -0.191 4.191 16 N -0.566 5.566 17 Si 0.789 3.211 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.202 1.202 21 S 0.491 5.509 22 H 0.106 0.894 23 H 0.079 0.921 24 H 0.104 0.896 25 H 0.168 0.832 26 H 0.180 0.820 27 H 0.199 0.801 28 H 0.184 0.816 29 H 0.243 0.757 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.026 0.974 33 H 0.025 0.975 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.026 13.768 -15.254 20.649 hybrid contribution 0.243 0.656 1.024 1.240 sum -1.783 14.424 -14.231 20.341 Atomic orbital electron populations 1.20380 0.86741 1.03368 1.03472 1.24586 1.02513 0.98580 1.10244 1.20029 0.93221 0.99544 1.07280 1.20951 0.96681 0.94916 1.01625 1.22720 0.98158 0.97467 1.14998 1.21121 0.92645 0.91310 0.94482 1.22339 1.02820 1.02268 0.98237 1.17941 0.86361 0.80824 0.84078 1.90950 1.29717 1.54972 1.69497 1.46168 1.27186 1.26894 1.36441 1.21110 0.91978 0.96378 0.88415 1.19137 0.96044 0.91484 0.94854 1.21496 1.08580 1.09650 1.18718 0.92490 1.25867 0.97174 0.96347 0.99723 1.70066 1.27477 1.16939 1.42160 0.85402 0.78880 0.78252 0.78548 1.19049 1.20092 1.20160 1.83095 0.95402 1.08374 1.64019 0.89369 0.92087 0.89644 0.83202 0.82044 0.80066 0.81616 0.75660 0.94052 0.93799 0.97387 0.97464 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.64 10.31 71.24 0.73 -0.91 16 2 C -0.24 -6.26 6.28 24.69 0.15 -6.10 16 3 C -0.17 -4.08 9.99 21.08 0.21 -3.87 16 4 C -0.11 -2.62 10.25 21.80 0.22 -2.39 16 5 C -0.22 -5.67 4.60 22.81 0.11 -5.57 16 6 C 0.03 0.54 9.88 22.50 0.22 0.76 16 7 C -0.23 -5.56 9.81 22.47 0.22 -5.34 16 8 C 0.52 17.49 7.07 85.04 0.60 18.09 16 9 O -0.57 -22.73 11.68 -4.66 -0.05 -22.78 16 10 N -0.72 -25.55 5.55 -472.23 -2.62 -28.17 16 11 C 0.15 6.43 5.61 86.38 0.48 6.91 16 12 C 0.02 1.15 5.09 29.85 0.15 1.30 16 13 C -0.55 -31.03 9.11 25.60 0.23 -30.79 16 14 H 0.06 3.19 7.74 -2.91 -0.02 3.16 16 15 C 0.01 0.43 5.46 84.65 0.46 0.89 16 16 N -0.93 -54.81 13.29 21.45 0.28 -54.52 16 17 Si 0.96 44.04 29.54 68.60 2.03 46.07 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 21 S 0.22 6.47 19.34 -56.49 -1.09 5.37 16 22 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 24 H 0.08 1.47 8.14 -2.39 -0.02 1.46 16 25 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 26 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 27 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 28 H 0.17 2.73 8.06 -2.91 -0.02 2.71 16 29 H 0.41 12.47 8.43 -92.71 -0.78 11.69 16 30 H 0.04 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 34 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -69.77 307.87 2.67 -67.11 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.32 Total: 13.94 kcal Atomic # 6 Polarization: -30.82 SS G_CDS: 3.80 Total: -27.02 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -2.33 Total: -82.69 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.05 Total: -22.78 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: 6.47 SS G_CDS: -1.09 Total: 5.37 kcal Total: -69.77 2.67 -67.11 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701294598.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.439 kcal (2) G-P(sol) polarization free energy of solvation -69.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds