Wall clock time and date at job start Mon Mar 30 2020 06:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33856 * 124.49407 * 2 1 4 4 C 1.37438 * 115.13172 * 179.72478 * 3 2 1 5 5 C 1.37042 * 113.21783 * 0.45125 * 4 3 2 6 6 C 1.41585 * 125.47557 * 179.83904 * 5 4 3 7 7 C 1.35649 * 119.99982 * 179.71695 * 6 5 4 8 8 C 1.41475 * 120.00033 * 180.02562 * 7 6 5 9 9 O 1.21785 * 119.99676 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99962 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00072 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47289 * 180.02562 * 11 10 8 13 13 C 1.50696 * 109.47242 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99967 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00542 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99408 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47011 * 90.00022 * 17 15 13 19 19 H 1.48498 * 109.47118 * 209.99881 * 17 15 13 20 20 H 1.48499 * 109.47134 * 330.00401 * 17 15 13 21 21 S 1.70602 * 124.48941 * 179.97438 * 2 1 3 22 22 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47256 * 300.00577 * 1 2 3 24 24 H 1.09003 * 109.46879 * 60.00251 * 1 2 3 25 25 H 1.08004 * 122.44067 * 359.97438 * 3 2 1 26 26 H 1.07995 * 123.39477 * 180.27165 * 4 3 2 27 27 H 1.07995 * 119.99761 * 359.71954 * 6 5 4 28 28 H 1.08012 * 120.00171 * 0.02562 * 7 6 5 29 29 H 0.97001 * 120.00676 * 359.97438 * 10 8 7 30 30 H 1.09001 * 109.47060 * 300.00359 * 11 10 8 31 31 H 1.09004 * 109.47073 * 59.99848 * 11 10 8 32 32 H 1.09001 * 109.46832 * 299.99854 * 12 11 10 33 33 H 1.08996 * 109.46952 * 59.99873 * 12 11 10 34 34 H 0.96999 * 119.99910 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2650 1.1032 0.0000 4 6 3.6211 0.8796 0.0060 5 6 3.9493 -0.4509 0.0010 6 6 5.2656 -0.9725 0.0020 7 6 5.4633 -2.3145 0.0024 8 6 6.7785 -2.8358 0.0040 9 8 7.7331 -2.0796 0.0054 10 7 6.9749 -4.1691 0.0039 11 6 8.3369 -4.7089 0.0061 12 6 8.2796 -6.2378 0.0048 13 6 9.6805 -6.7931 0.0077 14 1 10.5272 -6.1225 0.0098 15 6 9.8816 -8.1571 0.0077 16 7 8.8506 -8.9736 0.0047 17 14 11.6182 -8.8453 0.0106 18 1 12.0759 -9.0280 1.4114 19 1 11.6329 -10.1547 -0.6897 20 1 12.5263 -7.9003 -0.6875 21 16 2.4730 -1.4062 0.0006 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8419 2.0969 -0.0004 26 1 4.3543 1.6726 0.0110 27 1 6.1121 -0.3020 0.0025 28 1 4.6166 -2.9852 0.0016 29 1 6.2146 -4.7715 0.0031 30 1 8.8656 -4.3648 -0.8828 31 1 8.8625 -4.3654 0.8971 32 1 7.7508 -6.5823 0.8936 33 1 7.7542 -6.5810 -0.8864 34 1 8.9920 -9.9333 0.0044 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701294599.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:32 Heat of formation + Delta-G solvation = -8.644930 kcal Electronic energy + Delta-G solvation = -16124.718149 eV Core-core repulsion = 13341.870852 eV Total energy + Delta-G solvation = -2782.847297 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.44981 -38.36578 -35.05876 -34.31601 -32.82512 -31.44137 -29.70411 -27.20375 -24.87858 -23.73004 -22.35082 -20.84634 -19.68335 -19.49181 -16.99716 -16.89061 -16.26513 -15.50990 -15.04062 -14.86219 -14.47107 -14.42479 -13.81081 -13.45232 -13.18372 -13.12583 -12.70655 -12.51620 -12.37528 -12.24511 -11.84628 -11.18580 -11.03052 -10.96381 -10.62788 -10.40656 -10.25192 -9.83216 -9.47939 -9.20621 -8.82073 -8.54558 -8.37257 -8.04596 -6.08025 -4.10696 0.02075 1.28503 1.66007 1.71319 2.61252 3.30580 3.36543 3.40825 3.72933 3.86051 4.43498 4.48610 4.79204 4.86069 5.03450 5.11229 5.12079 5.26122 5.29031 5.47988 5.55790 5.66594 5.92605 6.03987 6.17378 6.29822 6.38207 6.45614 6.76967 6.95953 7.54036 7.63925 7.90503 8.05896 8.29775 8.68971 8.95426 9.54028 11.03684 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.050028 B = 0.002792 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.547412 B =10027.834130 C =10561.632303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.215 4.215 3 C -0.151 4.151 4 C -0.100 4.100 5 C -0.193 4.193 6 C 0.006 3.994 7 C -0.209 4.209 8 C 0.539 3.461 9 O -0.559 6.559 10 N -0.717 5.717 11 C 0.121 3.879 12 C 0.012 3.988 13 C -0.521 4.521 14 H 0.059 0.941 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.272 1.272 21 S 0.197 5.803 22 H 0.067 0.933 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.138 0.862 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.121 0.879 29 H 0.398 0.602 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.192 17.632 -0.011 25.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.334 4.334 3 C -0.181 4.181 4 C -0.132 4.132 5 C -0.311 4.311 6 C -0.015 4.015 7 C -0.233 4.233 8 C 0.329 3.671 9 O -0.441 6.441 10 N -0.366 5.366 11 C -0.002 4.002 12 C -0.026 4.026 13 C -0.560 4.560 14 H 0.078 0.922 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.725 3.275 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.197 1.197 21 S 0.466 5.534 22 H 0.086 0.914 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.156 0.844 26 H 0.165 0.835 27 H 0.164 0.836 28 H 0.139 0.861 29 H 0.232 0.768 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.892 16.396 -0.016 24.268 hybrid contribution 0.761 0.750 0.013 1.069 sum -17.131 17.146 -0.003 24.238 Atomic orbital electron populations 1.20348 0.87718 1.03021 1.03079 1.24210 1.01459 0.98193 1.09542 1.19872 0.92915 0.99345 1.05964 1.20905 0.96327 0.95170 1.00749 1.22639 0.97138 0.96970 1.14323 1.20682 0.93645 0.95638 0.91559 1.22137 0.97529 0.96007 1.07603 1.16931 0.89267 0.83043 0.77871 1.90803 1.43843 1.58110 1.51359 1.46288 1.10988 1.06232 1.73049 1.21725 0.80357 0.97251 1.00833 1.19328 0.98198 0.87178 0.97849 1.21061 0.91998 0.91674 1.51244 0.92235 1.25002 0.97227 0.97092 0.95016 1.69958 1.29796 1.03152 1.50456 0.86507 0.84464 0.78368 0.78194 1.20558 1.21171 1.19725 1.83177 0.94604 1.07411 1.68193 0.91374 0.90497 0.90489 0.84394 0.83507 0.83605 0.86146 0.76830 0.92486 0.92488 0.95936 0.95920 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.33 36.00 0.37 -0.10 16 2 C -0.21 -1.81 6.28 -35.85 -0.23 -2.03 16 3 C -0.15 -1.27 9.99 -41.41 -0.41 -1.68 16 4 C -0.10 -0.94 10.25 -40.31 -0.41 -1.36 16 5 C -0.19 -2.10 6.21 -38.74 -0.24 -2.34 16 6 C 0.01 0.08 9.37 -39.23 -0.37 -0.29 16 7 C -0.21 -2.89 9.30 -39.28 -0.37 -3.25 16 8 C 0.54 9.64 7.55 -15.03 -0.11 9.53 16 9 O -0.56 -11.92 16.11 5.11 0.08 -11.84 16 10 N -0.72 -13.06 5.55 -63.26 -0.35 -13.42 16 11 C 0.12 2.64 5.61 -4.04 -0.02 2.62 16 12 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 13 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 14 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 17 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 21 S 0.20 1.86 21.69 -107.50 -2.33 -0.47 16 22 H 0.07 0.35 8.11 -51.93 -0.42 -0.07 16 23 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 26 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 27 H 0.15 1.87 7.46 -52.49 -0.39 1.48 16 28 H 0.12 1.39 7.04 -52.48 -0.37 1.02 16 29 H 0.40 6.26 8.43 -40.82 -0.34 5.91 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 314.08 15.07 4.73 4.73 Total: -1.00 -32.30 314.08 -8.94 -41.25 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -4.45 Total: 0.97 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -2.34 Total: -12.14 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.39 Total: -39.03 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.33 Total: -0.47 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.30 -8.94 -41.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701294599.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.602 kcal (2) G-P(sol) polarization free energy of solvation -32.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds