Wall clock time and date at job start Mon Mar 30 2020 06:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33856 * 124.49407 * 2 1 4 4 C 1.37438 * 115.13172 * 179.72478 * 3 2 1 5 5 C 1.37042 * 113.21783 * 0.45125 * 4 3 2 6 6 C 1.41585 * 125.47557 * 179.83904 * 5 4 3 7 7 C 1.35649 * 119.99982 * 179.71695 * 6 5 4 8 8 C 1.41475 * 120.00033 * 180.02562 * 7 6 5 9 9 O 1.21785 * 119.99676 * 0.02562 * 8 7 6 10 10 N 1.34774 * 119.99962 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00072 * 180.02562 * 10 8 7 12 12 C 1.52997 * 109.47289 * 180.02562 * 11 10 8 13 13 C 1.50696 * 109.47242 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99967 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00542 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99408 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47011 * 90.00022 * 17 15 13 19 19 H 1.48498 * 109.47118 * 209.99881 * 17 15 13 20 20 H 1.48499 * 109.47134 * 330.00401 * 17 15 13 21 21 S 1.70602 * 124.48941 * 179.97438 * 2 1 3 22 22 H 1.08994 * 109.47398 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47256 * 300.00577 * 1 2 3 24 24 H 1.09003 * 109.46879 * 60.00251 * 1 2 3 25 25 H 1.08004 * 122.44067 * 359.97438 * 3 2 1 26 26 H 1.07995 * 123.39477 * 180.27165 * 4 3 2 27 27 H 1.07995 * 119.99761 * 359.71954 * 6 5 4 28 28 H 1.08012 * 120.00171 * 0.02562 * 7 6 5 29 29 H 0.97001 * 120.00676 * 359.97438 * 10 8 7 30 30 H 1.09001 * 109.47060 * 300.00359 * 11 10 8 31 31 H 1.09004 * 109.47073 * 59.99848 * 11 10 8 32 32 H 1.09001 * 109.46832 * 299.99854 * 12 11 10 33 33 H 1.08996 * 109.46952 * 59.99873 * 12 11 10 34 34 H 0.96999 * 119.99910 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2650 1.1032 0.0000 4 6 3.6211 0.8796 0.0060 5 6 3.9493 -0.4509 0.0010 6 6 5.2656 -0.9725 0.0020 7 6 5.4633 -2.3145 0.0024 8 6 6.7785 -2.8358 0.0040 9 8 7.7331 -2.0796 0.0054 10 7 6.9749 -4.1691 0.0039 11 6 8.3369 -4.7089 0.0061 12 6 8.2796 -6.2378 0.0048 13 6 9.6805 -6.7931 0.0077 14 1 10.5272 -6.1225 0.0098 15 6 9.8816 -8.1571 0.0077 16 7 8.8506 -8.9736 0.0047 17 14 11.6182 -8.8453 0.0106 18 1 12.0759 -9.0280 1.4114 19 1 11.6329 -10.1547 -0.6897 20 1 12.5263 -7.9003 -0.6875 21 16 2.4730 -1.4062 0.0006 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8419 2.0969 -0.0004 26 1 4.3543 1.6726 0.0110 27 1 6.1121 -0.3020 0.0025 28 1 4.6166 -2.9852 0.0016 29 1 6.2146 -4.7715 0.0031 30 1 8.8656 -4.3648 -0.8828 31 1 8.8625 -4.3654 0.8971 32 1 7.7508 -6.5823 0.8936 33 1 7.7542 -6.5810 -0.8864 34 1 8.9920 -9.9333 0.0044 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701294599.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:31 Heat of formation + Delta-G solvation = -28.453436 kcal Electronic energy + Delta-G solvation = -16125.577110 eV Core-core repulsion = 13341.870852 eV Total energy + Delta-G solvation = -2783.706258 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.86656 -39.11679 -36.69904 -35.37438 -34.81899 -32.34238 -31.41301 -28.26376 -26.57273 -24.58449 -23.57169 -22.59460 -20.92641 -20.34907 -18.60403 -18.04237 -17.70313 -16.58842 -16.45510 -16.42197 -16.22897 -15.06520 -14.96416 -14.80418 -14.48030 -14.23353 -13.89705 -13.49696 -13.38996 -13.22487 -13.03786 -12.94528 -12.53087 -12.48908 -12.25604 -11.71865 -11.65727 -11.47716 -11.22684 -10.97929 -10.61048 -10.04126 -9.53491 -8.94459 -8.24614 -6.35292 -0.85475 0.55740 0.75972 1.00425 1.41513 1.42312 1.53899 1.79655 2.33170 2.45466 2.51906 3.09969 3.82426 3.92011 4.06295 4.26587 4.36228 4.40626 4.48669 4.53389 4.69834 4.74386 4.84617 4.94396 5.08913 5.15183 5.22208 5.29390 5.35137 5.50290 5.53640 5.57194 5.78379 6.15632 6.64111 6.77887 7.27361 7.34004 8.87463 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.050028 B = 0.002792 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.547412 B =10027.834130 C =10561.632303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.201 4.201 3 C -0.165 4.165 4 C -0.081 4.081 5 C -0.237 4.237 6 C 0.041 3.959 7 C -0.242 4.242 8 C 0.543 3.457 9 O -0.602 6.602 10 N -0.716 5.716 11 C 0.140 3.860 12 C 0.023 3.977 13 C -0.548 4.548 14 H 0.059 0.941 15 C 0.006 3.994 16 N -0.927 5.927 17 Si 0.967 3.033 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.266 1.266 21 S 0.196 5.804 22 H 0.073 0.927 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.163 0.837 26 H 0.164 0.836 27 H 0.139 0.861 28 H 0.141 0.859 29 H 0.410 0.590 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.008 0.992 33 H 0.009 0.991 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.612 18.950 0.001 27.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.321 4.321 3 C -0.195 4.195 4 C -0.113 4.113 5 C -0.354 4.354 6 C 0.019 3.981 7 C -0.265 4.265 8 C 0.336 3.664 9 O -0.487 6.487 10 N -0.365 5.365 11 C 0.016 3.984 12 C -0.015 4.015 13 C -0.586 4.586 14 H 0.077 0.923 15 C -0.193 4.193 16 N -0.567 5.567 17 Si 0.791 3.209 18 H -0.197 1.197 19 H -0.204 1.204 20 H -0.191 1.191 21 S 0.465 5.535 22 H 0.092 0.908 23 H 0.110 0.890 24 H 0.110 0.890 25 H 0.181 0.819 26 H 0.181 0.819 27 H 0.157 0.843 28 H 0.159 0.841 29 H 0.246 0.754 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.339 17.703 -0.003 26.219 hybrid contribution 0.984 0.534 0.010 1.119 sum -18.356 18.237 0.007 25.875 Atomic orbital electron populations 1.20509 0.85661 1.03906 1.04450 1.24706 1.02887 0.97591 1.06876 1.20164 0.92437 1.00599 1.06274 1.21280 0.97414 0.94954 0.97669 1.22597 0.96828 0.97996 1.17991 1.20730 0.94513 0.95014 0.87822 1.21851 0.95746 0.96791 1.12106 1.17441 0.90416 0.82230 0.76350 1.90770 1.45483 1.58819 1.53606 1.46094 1.09864 1.06930 1.73618 1.21227 0.82293 0.95051 0.99802 1.19135 0.96813 0.89187 0.96345 1.21475 0.93186 0.92354 1.51598 0.92296 1.25896 1.01612 0.97387 0.94365 1.70062 1.32021 1.03592 1.50989 0.85419 0.79202 0.77711 0.78562 1.19692 1.20412 1.19070 1.83209 0.94230 1.08022 1.68032 0.90837 0.89019 0.89011 0.81941 0.81892 0.84333 0.84147 0.75388 0.93550 0.93525 0.97318 0.97306 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.70 10.33 71.24 0.74 0.04 16 2 C -0.20 -2.79 6.28 24.69 0.15 -2.64 16 3 C -0.17 -2.26 9.99 21.08 0.21 -2.05 16 4 C -0.08 -1.33 10.25 21.80 0.22 -1.11 16 5 C -0.24 -4.83 6.21 22.81 0.14 -4.69 16 6 C 0.04 1.02 9.37 22.50 0.21 1.23 16 7 C -0.24 -6.72 9.30 22.47 0.21 -6.51 16 8 C 0.54 19.92 7.55 85.04 0.64 20.56 16 9 O -0.60 -26.46 16.11 -4.62 -0.07 -26.53 16 10 N -0.72 -26.83 5.55 -472.24 -2.62 -29.45 16 11 C 0.14 6.34 5.61 86.38 0.48 6.82 16 12 C 0.02 1.18 5.09 29.85 0.15 1.33 16 13 C -0.55 -31.29 9.11 25.60 0.23 -31.06 16 14 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 15 C 0.01 0.35 5.46 84.65 0.46 0.81 16 16 N -0.93 -55.11 13.29 21.45 0.28 -54.83 16 17 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 21 S 0.20 3.36 21.69 -56.49 -1.23 2.14 16 22 H 0.07 0.54 8.11 -2.39 -0.02 0.52 16 23 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 24 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 26 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 27 H 0.14 3.57 7.46 -2.91 -0.02 3.55 16 28 H 0.14 3.22 7.04 -2.90 -0.02 3.19 16 29 H 0.41 13.22 8.43 -92.71 -0.78 12.43 16 30 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 32 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -69.65 314.08 2.57 -67.08 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: 0.32 Total: 12.61 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 3.86 Total: -17.26 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -2.33 Total: -84.27 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.07 Total: -26.53 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 3.36 SS G_CDS: -1.23 Total: 2.14 kcal Total: -69.65 2.57 -67.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701294599.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.624 kcal (2) G-P(sol) polarization free energy of solvation -69.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds