Wall clock time and date at job start Mon Mar 30 2020 06:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50705 * 109.47455 * 2 1 4 4 N 1.28731 * 124.74620 * 90.30413 * 3 2 1 5 5 C 1.32567 * 117.13655 * 180.20875 * 4 3 2 6 6 C 1.48241 * 122.98100 * 179.75233 * 5 4 3 7 7 N 1.30863 * 126.42693 * 179.71168 * 6 5 4 8 8 O 1.21290 * 110.07531 * 179.70377 * 7 6 5 9 9 C 1.33673 * 110.04664 * 0.46798 * 8 7 6 10 10 C 1.50703 * 126.42588 * 179.79818 * 9 8 7 11 11 C 1.50701 * 109.47064 * 269.68816 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47294 * 60.00559 * 15 13 11 17 17 H 1.48503 * 109.46954 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47431 * 300.00157 * 15 13 11 19 19 N 1.30960 * 107.14797 * 359.53675 * 9 8 7 20 20 C 1.34918 * 114.04191 * 359.48660 * 5 4 3 21 21 S 1.70916 * 124.73804 * 269.97831 * 3 2 1 22 22 H 1.08997 * 109.47092 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.46974 * 300.00461 * 1 2 3 24 24 H 1.08993 * 109.47375 * 59.99719 * 1 2 3 25 25 H 1.09001 * 109.47220 * 240.00222 * 2 1 3 26 26 H 1.09002 * 109.47529 * 120.00093 * 2 1 3 27 27 H 1.09002 * 109.47152 * 149.68908 * 10 9 8 28 28 H 1.09001 * 109.46980 * 29.69009 * 10 9 8 29 29 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 30 30 H 1.07997 * 126.06961 * 180.28885 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2823 2.1107 1.0577 5 6 2.7154 3.3512 0.8822 6 6 3.0370 4.2605 2.0080 7 7 3.4725 5.4909 1.9130 8 8 3.6329 5.9624 3.0189 9 6 3.3189 5.0584 3.9523 10 6 3.3874 5.2528 5.4452 11 6 4.7497 4.8435 5.9430 12 1 5.4917 4.4795 5.2479 13 6 5.0489 4.9348 7.2859 14 7 4.1454 5.3786 8.1322 15 14 6.7377 4.4282 7.9029 16 1 7.7756 5.2632 7.2465 17 1 6.8051 4.6196 9.3740 18 1 6.9748 2.9985 7.5789 19 7 2.9353 3.9741 3.3261 20 6 2.8430 3.7110 -0.4118 21 16 2.3576 2.3389 -1.4045 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.6254 4.6400 5.9267 28 1 3.2137 6.3022 5.6832 29 1 4.3559 5.4425 9.0770 30 1 3.1827 4.6697 -0.7748 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702321916.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:12 Heat of formation + Delta-G solvation = 98.456773 kcal Electronic energy + Delta-G solvation = -16657.388382 eV Core-core repulsion = 13775.645020 eV Total energy + Delta-G solvation = -2881.743362 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.79959 -39.89388 -35.28899 -34.34508 -33.56847 -32.01022 -29.71065 -28.31188 -26.02364 -24.43962 -23.98117 -22.43617 -20.89567 -19.68193 -18.23457 -17.55708 -16.46771 -16.20397 -15.69609 -14.96151 -14.83947 -14.68864 -14.21347 -13.36399 -13.33108 -12.65949 -12.48210 -12.32933 -11.93057 -11.86746 -11.40649 -11.33950 -11.23632 -10.99217 -10.76677 -10.35598 -10.17856 -9.98815 -9.71485 -9.57756 -9.24818 -8.60274 -8.58175 -6.24070 -4.29802 0.43390 1.13187 1.48042 1.69497 2.46906 3.27397 3.30839 3.33909 3.41668 3.49048 3.72999 4.26234 4.34113 4.58233 4.82704 4.97434 5.05081 5.14026 5.30521 5.35720 5.56805 5.63982 5.75270 5.86774 5.97654 6.50897 6.60257 7.10974 7.18364 7.61671 7.69143 7.92113 8.69996 8.82864 9.34979 10.86354 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.028190 B = 0.004172 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.018019 B = 6709.462629 C = 7114.960228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.055 3.945 4 N -0.436 5.436 5 C 0.159 3.841 6 C 0.221 3.779 7 N -0.393 5.393 8 O 0.071 5.929 9 C 0.240 3.760 10 C 0.101 3.899 11 C -0.525 4.525 12 H 0.061 0.939 13 C 0.067 3.933 14 N -0.888 5.888 15 Si 0.906 3.094 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.274 1.274 19 N -0.478 5.478 20 C -0.226 4.226 21 S 0.130 5.870 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.057 0.943 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.268 0.732 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.492 -7.180 -17.637 19.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.088 4.088 3 C -0.225 4.225 4 N -0.150 5.150 5 C 0.027 3.973 6 C -0.052 4.052 7 N -0.104 5.104 8 O 0.012 5.988 9 C 0.021 3.979 10 C 0.063 3.937 11 C -0.564 4.564 12 H 0.079 0.921 13 C -0.136 4.136 14 N -0.525 5.525 15 Si 0.733 3.267 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.199 1.199 19 N -0.211 5.211 20 C -0.368 4.368 21 S 0.385 5.615 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.076 0.924 25 H 0.105 0.895 26 H 0.117 0.883 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -5.681 -7.593 -18.762 21.022 hybrid contribution 1.192 0.476 1.257 1.796 sum -4.489 -7.117 -17.505 19.423 Atomic orbital electron populations 1.21776 0.93352 1.02634 1.02843 1.20266 0.96863 0.87123 1.04536 1.27066 1.03048 1.02092 0.90310 1.65997 1.13127 1.04681 1.31149 1.16852 1.02455 0.89430 0.88575 1.22700 1.01559 0.90164 0.90731 1.74783 1.20972 1.11361 1.03286 1.85251 1.63050 1.40015 1.10519 1.30256 0.88013 0.81326 0.98260 1.18255 1.00442 1.00748 0.74298 1.20755 0.96686 1.45700 0.93252 0.92080 1.24911 0.97892 0.94526 0.96270 1.69911 1.34082 1.44962 1.03562 0.86410 0.83274 0.79361 0.77633 1.19898 1.20900 1.19932 1.72221 1.22669 1.24881 1.01289 1.27067 1.09872 1.04690 0.95180 1.83802 1.60348 1.04775 1.12624 0.91271 0.91663 0.92438 0.89499 0.88331 0.91123 0.92178 0.92189 0.79728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 37.15 0.37 -0.81 16 2 C -0.05 -0.43 6.51 -27.88 -0.18 -0.61 16 3 C 0.06 0.71 6.61 -13.58 -0.09 0.62 16 4 N -0.44 -7.59 10.55 -8.44 -0.09 -7.68 16 5 C 0.16 2.88 6.72 -84.62 -0.57 2.31 16 6 C 0.22 4.73 8.01 -156.07 -1.25 3.48 16 7 N -0.39 -8.24 12.09 30.99 0.37 -7.86 16 8 O 0.07 1.55 11.29 18.03 0.20 1.75 16 9 C 0.24 5.60 7.68 -12.98 -0.10 5.50 16 10 C 0.10 2.52 5.60 -29.03 -0.16 2.36 16 11 C -0.53 -14.31 9.09 -34.44 -0.31 -14.62 16 12 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 13 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 14 N -0.89 -24.81 13.29 55.43 0.74 -24.07 16 15 Si 0.91 20.97 29.54 -169.99 -5.02 15.95 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 19 N -0.48 -11.35 11.58 -9.86 -0.11 -11.46 16 20 C -0.23 -3.18 11.11 29.55 0.33 -2.86 16 21 S 0.13 1.37 23.16 -107.50 -2.49 -1.12 16 22 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.07 1.82 8.14 -51.93 -0.42 1.40 16 28 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 29 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.19 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 290.61 15.07 4.38 4.38 Total: -1.00 -30.58 290.61 -7.01 -37.59 By element: Atomic # 1 Polarization: -1.66 SS G_CDS: -2.92 Total: -4.58 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -2.07 Total: -2.90 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.91 Total: -51.07 kcal Atomic # 8 Polarization: 1.55 SS G_CDS: 0.20 Total: 1.75 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.49 Total: -1.12 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.58 -7.01 -37.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702321916.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.048 kcal (2) G-P(sol) polarization free energy of solvation -30.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds