Wall clock time and date at job start Mon Mar 30 2020 06:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86799 * 120.00407 * 2 1 4 4 H 1.48502 * 109.47111 * 240.00221 * 3 2 1 5 5 H 1.48503 * 109.47148 * 120.00440 * 3 2 1 6 6 H 1.48493 * 109.47091 * 0.02562 * 3 2 1 7 7 C 1.39874 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00392 * 206.08533 * 7 2 1 9 9 C 1.41034 * 119.99977 * 26.09271 * 7 2 1 10 10 C 1.40634 * 120.26207 * 26.44446 * 9 7 2 11 11 C 1.38076 * 119.76144 * 179.97438 * 10 9 7 12 12 S 1.76200 * 119.84118 * 179.97438 * 11 10 9 13 13 C 1.81407 * 102.99850 * 180.02562 * 12 11 10 14 14 H 1.09002 * 110.80261 * 308.62953 * 13 12 11 15 15 C 1.54808 * 110.90664 * 185.00209 * 13 12 11 16 16 C 1.54098 * 104.18713 * 220.92146 * 15 13 12 17 17 O 1.43748 * 107.29360 * 357.97291 * 16 15 13 18 18 C 1.44375 * 106.97673 * 26.51109 * 17 16 15 19 19 C 1.39669 * 120.31116 * 0.02562 * 11 10 9 20 20 C 1.38021 * 120.54424 * 359.97438 * 19 11 10 21 21 C 1.38763 * 120.22573 * 359.74633 * 20 19 11 22 22 N 1.38837 * 120.15994 * 180.25386 * 21 20 19 23 23 H 0.96994 * 120.00441 * 184.18120 * 1 2 3 24 24 H 1.08000 * 120.11977 * 359.97438 * 10 9 7 25 25 H 1.08999 * 110.48892 * 339.59560 * 15 13 12 26 26 H 1.09002 * 110.48932 * 102.24386 * 15 13 12 27 27 H 1.09003 * 109.88319 * 117.39315 * 16 15 13 28 28 H 1.09008 * 109.87946 * 238.54763 * 16 15 13 29 29 H 1.08994 * 110.61948 * 201.43945 * 18 17 16 30 30 H 1.09002 * 110.61919 * 78.43688 * 18 17 16 31 31 H 1.08004 * 119.73229 * 179.97438 * 19 11 10 32 32 H 1.08003 * 119.88805 * 180.02562 * 20 19 11 33 33 H 0.96998 * 120.00447 * 180.25761 * 22 21 20 34 34 H 0.97007 * 119.99977 * 0.25504 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.0969 1.6963 -1.2125 5 1 3.0971 1.6962 1.2125 6 1 1.2783 2.7464 0.0006 7 6 2.0084 -1.2114 -0.0005 8 1 3.0059 -1.2593 0.4107 9 6 1.4109 -2.3703 -0.5383 10 6 0.4229 -2.2618 -1.5332 11 6 -0.1548 -3.4032 -2.0528 12 16 -1.3934 -3.2697 -3.2988 13 6 -1.8205 -5.0001 -3.6366 14 1 -0.9247 -5.5880 -3.8367 15 6 -2.8225 -5.1024 -4.8122 16 6 -3.8184 -6.1905 -4.3661 17 8 -3.3751 -6.6775 -3.0883 18 6 -2.6320 -5.6084 -2.4644 19 6 0.2373 -4.6630 -1.5945 20 6 1.2057 -4.7842 -0.6186 21 6 1.8052 -3.6523 -0.0849 22 7 2.7830 -3.7760 0.8930 23 1 -0.4850 -0.8377 0.0612 24 1 0.1171 -1.2892 -1.8895 25 1 -3.3362 -4.1524 -4.9595 26 1 -2.3099 -5.4056 -5.7252 27 1 -4.8171 -5.7636 -4.2738 28 1 -3.8267 -7.0049 -5.0906 29 1 -1.9638 -6.0016 -1.6984 30 1 -3.3090 -4.8666 -2.0408 31 1 -0.2211 -5.5496 -2.0072 32 1 1.5011 -5.7636 -0.2723 33 1 3.1979 -2.9831 1.2671 34 1 3.0512 -4.6556 1.2021 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703090553.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:41 Heat of formation + Delta-G solvation = -35.936739 kcal Electronic energy + Delta-G solvation = -17514.545004 eV Core-core repulsion = 14730.514246 eV Total energy + Delta-G solvation = -2784.030759 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.14255 -38.00181 -33.93391 -33.36523 -32.12133 -29.65234 -28.97456 -27.68574 -25.06271 -22.83895 -21.85527 -20.96843 -20.63274 -18.05458 -16.90791 -16.63610 -15.86052 -15.66206 -15.30919 -15.02612 -14.07566 -13.98973 -13.51185 -13.29251 -12.97142 -12.47630 -12.23442 -11.98385 -11.72065 -11.63811 -11.44114 -11.16616 -11.07488 -10.62081 -10.41217 -10.27432 -9.99510 -9.68997 -9.51636 -9.42103 -8.96014 -7.78288 -7.60228 -7.21767 -6.11642 -4.28871 2.12738 2.68087 2.79086 3.15807 3.19027 3.24433 3.36669 4.03490 4.03810 4.49910 4.54599 4.77219 4.95510 5.07390 5.16073 5.27729 5.42340 5.62872 5.68608 5.82924 5.88892 5.97575 6.05425 6.24083 6.73814 6.81158 6.87415 7.14986 7.36367 7.42772 7.65757 7.75630 8.04370 8.06763 8.41783 8.74068 8.92640 8.94490 10.10835 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.027002 B = 0.005501 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.719726 B = 5089.131302 C = 5850.470638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.040 3.960 3 Si 1.063 2.937 4 H -0.276 1.276 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.073 0.927 9 C 0.068 3.932 10 C -0.175 4.175 11 C -0.085 4.085 12 S -0.137 6.137 13 C -0.108 4.108 14 H 0.101 0.899 15 C -0.132 4.132 16 C 0.051 3.949 17 O -0.380 6.380 18 C 0.055 3.945 19 C -0.212 4.212 20 C -0.162 4.162 21 C 0.121 3.879 22 N -0.881 5.881 23 H 0.299 0.701 24 H 0.111 0.889 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.393 0.607 34 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.678 -6.547 -4.786 8.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.182 4.182 3 Si 0.887 3.113 4 H -0.201 1.201 5 H -0.204 1.204 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.091 0.909 9 C 0.061 3.939 10 C -0.201 4.201 11 C -0.199 4.199 12 S 0.104 5.896 13 C -0.237 4.237 14 H 0.120 0.880 15 C -0.171 4.171 16 C -0.027 4.027 17 O -0.299 6.299 18 C -0.023 4.023 19 C -0.237 4.237 20 C -0.188 4.188 21 C 0.019 3.981 22 N -0.422 5.422 23 H 0.112 0.888 24 H 0.129 0.871 25 H 0.102 0.898 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.121 0.879 30 H 0.092 0.908 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.222 0.778 34 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -3.545 -4.114 -5.364 7.633 hybrid contribution 1.139 -2.678 0.811 3.021 sum -2.406 -6.793 -4.553 8.524 Atomic orbital electron populations 1.70485 1.08118 1.34193 1.29369 1.26871 0.95669 1.04001 0.91665 0.83657 0.75660 0.74167 0.77786 1.20110 1.20364 1.19919 1.20113 1.03154 0.94291 1.38101 0.90946 1.17182 0.93433 0.90891 0.92351 1.20416 1.03686 0.95574 1.00380 1.20877 1.01164 0.96652 1.01159 1.85081 1.48558 1.06544 1.49373 1.24774 1.01879 0.98555 0.98539 0.88047 1.22770 0.96370 1.00248 0.97727 1.23132 0.97017 0.96566 0.86007 1.88855 1.72711 1.37397 1.30960 1.24145 0.93680 0.89660 0.94832 1.20130 1.04817 0.93933 1.04784 1.19861 1.01799 0.95206 1.01958 1.17949 0.93961 0.93619 0.92619 1.41933 1.45499 1.08917 1.45856 0.88754 0.87111 0.89753 0.89751 0.92213 0.89863 0.87945 0.90786 0.88731 0.88990 0.77844 0.79588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.24 12.41 55.54 0.69 -20.55 16 2 C 0.04 0.99 4.91 -17.33 -0.09 0.91 16 3 Si 1.06 21.46 30.00 -169.99 -5.10 16.35 16 4 H -0.28 -5.43 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.53 -13.45 8.40 -37.91 -0.32 -13.77 16 8 H 0.07 1.76 6.77 -52.49 -0.36 1.40 16 9 C 0.07 1.75 5.29 -106.66 -0.56 1.19 16 10 C -0.17 -4.46 7.67 -38.74 -0.30 -4.76 16 11 C -0.09 -1.95 6.10 -39.11 -0.24 -2.19 16 12 S -0.14 -2.64 21.22 -107.50 -2.28 -4.92 16 13 C -0.11 -1.68 2.66 -24.72 -0.07 -1.75 16 14 H 0.10 1.61 7.25 -51.93 -0.38 1.24 16 15 C -0.13 -1.62 6.62 -25.20 -0.17 -1.79 16 16 C 0.05 0.59 7.70 37.73 0.29 0.88 16 17 O -0.38 -5.69 11.52 -35.23 -0.41 -6.09 16 18 C 0.06 0.86 6.66 38.21 0.25 1.11 16 19 C -0.21 -4.57 8.73 -39.13 -0.34 -4.92 16 20 C -0.16 -3.53 9.86 -39.47 -0.39 -3.92 16 21 C 0.12 2.81 6.79 -83.22 -0.56 2.25 16 22 N -0.88 -17.05 8.98 32.75 0.29 -16.76 16 23 H 0.30 8.23 6.71 -40.82 -0.27 7.96 16 24 H 0.11 2.99 6.59 -52.49 -0.35 2.65 16 25 H 0.08 1.02 7.82 -51.93 -0.41 0.61 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.80 8.14 -51.92 -0.42 0.37 16 29 H 0.10 1.65 6.34 -51.93 -0.33 1.32 16 30 H 0.07 1.17 8.04 -51.93 -0.42 0.75 16 31 H 0.09 1.82 4.35 -52.48 -0.23 1.59 16 32 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 33 H 0.39 7.49 7.05 -40.82 -0.29 7.20 16 34 H 0.38 6.10 8.83 -40.82 -0.36 5.74 16 LS Contribution 289.07 15.07 4.36 4.36 Total: -1.00 -27.76 289.07 -8.80 -36.56 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -3.87 Total: 17.80 kcal Atomic # 6 Polarization: -24.27 SS G_CDS: -2.49 Total: -26.76 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.98 Total: -37.30 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.41 Total: -6.09 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.10 Total: 16.35 kcal Atomic # 16 Polarization: -2.64 SS G_CDS: -2.28 Total: -4.92 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -27.76 -8.80 -36.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703090553.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.623 kcal (2) G-P(sol) polarization free energy of solvation -27.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds