Wall clock time and date at job start Mon Mar 30 2020 06:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86799 * 120.00407 * 2 1 4 4 H 1.48502 * 109.47111 * 240.00221 * 3 2 1 5 5 H 1.48503 * 109.47148 * 120.00440 * 3 2 1 6 6 H 1.48493 * 109.47091 * 0.02562 * 3 2 1 7 7 C 1.39874 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00392 * 206.08533 * 7 2 1 9 9 C 1.41034 * 119.99977 * 26.09271 * 7 2 1 10 10 C 1.40634 * 120.26207 * 26.44446 * 9 7 2 11 11 C 1.38076 * 119.76144 * 179.97438 * 10 9 7 12 12 S 1.76200 * 119.84118 * 179.97438 * 11 10 9 13 13 C 1.81407 * 102.99850 * 180.02562 * 12 11 10 14 14 H 1.09002 * 110.80261 * 308.62953 * 13 12 11 15 15 C 1.54808 * 110.90664 * 185.00209 * 13 12 11 16 16 C 1.54098 * 104.18713 * 220.92146 * 15 13 12 17 17 O 1.43748 * 107.29360 * 357.97291 * 16 15 13 18 18 C 1.44375 * 106.97673 * 26.51109 * 17 16 15 19 19 C 1.39669 * 120.31116 * 0.02562 * 11 10 9 20 20 C 1.38021 * 120.54424 * 359.97438 * 19 11 10 21 21 C 1.38763 * 120.22573 * 359.74633 * 20 19 11 22 22 N 1.38837 * 120.15994 * 180.25386 * 21 20 19 23 23 H 0.96994 * 120.00441 * 184.18120 * 1 2 3 24 24 H 1.08000 * 120.11977 * 359.97438 * 10 9 7 25 25 H 1.08999 * 110.48892 * 339.59560 * 15 13 12 26 26 H 1.09002 * 110.48932 * 102.24386 * 15 13 12 27 27 H 1.09003 * 109.88319 * 117.39315 * 16 15 13 28 28 H 1.09008 * 109.87946 * 238.54763 * 16 15 13 29 29 H 1.08994 * 110.61948 * 201.43945 * 18 17 16 30 30 H 1.09002 * 110.61919 * 78.43688 * 18 17 16 31 31 H 1.08004 * 119.73229 * 179.97438 * 19 11 10 32 32 H 1.08003 * 119.88805 * 180.02562 * 20 19 11 33 33 H 0.96998 * 120.00447 * 180.25761 * 22 21 20 34 34 H 0.97007 * 119.99977 * 0.25504 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6177 0.0000 4 1 3.0969 1.6963 -1.2125 5 1 3.0971 1.6962 1.2125 6 1 1.2783 2.7464 0.0006 7 6 2.0084 -1.2114 -0.0005 8 1 3.0059 -1.2593 0.4107 9 6 1.4109 -2.3703 -0.5383 10 6 0.4229 -2.2618 -1.5332 11 6 -0.1548 -3.4032 -2.0528 12 16 -1.3934 -3.2697 -3.2988 13 6 -1.8205 -5.0001 -3.6366 14 1 -0.9247 -5.5880 -3.8367 15 6 -2.8225 -5.1024 -4.8122 16 6 -3.8184 -6.1905 -4.3661 17 8 -3.3751 -6.6775 -3.0883 18 6 -2.6320 -5.6084 -2.4644 19 6 0.2373 -4.6630 -1.5945 20 6 1.2057 -4.7842 -0.6186 21 6 1.8052 -3.6523 -0.0849 22 7 2.7830 -3.7760 0.8930 23 1 -0.4850 -0.8377 0.0612 24 1 0.1171 -1.2892 -1.8895 25 1 -3.3362 -4.1524 -4.9595 26 1 -2.3099 -5.4056 -5.7252 27 1 -4.8171 -5.7636 -4.2738 28 1 -3.8267 -7.0049 -5.0906 29 1 -1.9638 -6.0016 -1.6984 30 1 -3.3090 -4.8666 -2.0408 31 1 -0.2211 -5.5496 -2.0072 32 1 1.5011 -5.7636 -0.2723 33 1 3.1979 -2.9831 1.2671 34 1 3.0512 -4.6556 1.2021 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703090553.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:41 Heat of formation + Delta-G solvation = -52.791215 kcal Electronic energy + Delta-G solvation = -17515.275869 eV Core-core repulsion = 14730.514246 eV Total energy + Delta-G solvation = -2784.761624 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.26749 -39.78036 -35.77288 -35.06163 -33.27227 -31.31201 -30.26772 -29.41154 -26.89735 -23.96572 -23.36849 -22.63697 -22.14867 -19.86958 -18.15819 -18.03033 -17.53250 -17.23185 -16.80829 -16.14324 -15.69195 -15.44377 -14.91497 -14.70257 -14.56564 -14.29638 -13.99154 -13.51210 -13.29343 -12.85689 -12.76631 -12.56161 -12.38409 -12.20508 -11.98096 -11.81170 -11.61319 -11.30645 -10.97471 -10.80017 -10.75240 -9.56914 -9.29242 -9.15038 -7.80410 -6.20275 0.69287 0.88030 0.95286 1.51598 1.61515 1.63618 1.79350 2.36687 2.71418 2.94104 3.39503 3.47737 3.54554 3.63864 3.93051 4.14238 4.16306 4.30008 4.41582 4.58345 4.73553 4.78975 4.85444 4.91031 4.99580 5.07455 5.31213 5.54886 5.61110 5.74036 5.81038 5.84128 6.16979 6.23570 6.60110 6.94338 7.12340 7.39366 8.14706 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.027002 B = 0.005501 C = 0.004785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.719726 B = 5089.131302 C = 5850.470638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.002 3.998 3 Si 1.113 2.887 4 H -0.269 1.269 5 H -0.255 1.255 6 H -0.278 1.278 7 C -0.554 4.554 8 H 0.078 0.922 9 C 0.034 3.966 10 C -0.194 4.194 11 C -0.104 4.104 12 S -0.150 6.150 13 C -0.101 4.101 14 H 0.102 0.898 15 C -0.126 4.126 16 C 0.048 3.952 17 O -0.392 6.392 18 C 0.059 3.941 19 C -0.199 4.199 20 C -0.171 4.171 21 C 0.116 3.884 22 N -0.868 5.868 23 H 0.280 0.720 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.107 0.893 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.124 0.876 33 H 0.395 0.605 34 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.510 -8.232 -5.561 10.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.213 4.213 3 Si 0.931 3.069 4 H -0.194 1.194 5 H -0.179 1.179 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.096 0.904 9 C 0.028 3.972 10 C -0.220 4.220 11 C -0.217 4.217 12 S 0.092 5.908 13 C -0.230 4.230 14 H 0.121 0.879 15 C -0.165 4.165 16 C -0.030 4.030 17 O -0.312 6.312 18 C -0.020 4.020 19 C -0.223 4.223 20 C -0.196 4.196 21 C 0.012 3.988 22 N -0.410 5.410 23 H 0.092 0.908 24 H 0.101 0.899 25 H 0.104 0.896 26 H 0.125 0.875 27 H 0.091 0.909 28 H 0.129 0.871 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.139 0.861 32 H 0.142 0.858 33 H 0.223 0.777 34 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -3.355 -5.834 -6.118 9.095 hybrid contribution 1.017 -2.378 0.969 2.762 sum -2.337 -8.212 -5.150 9.971 Atomic orbital electron populations 1.70603 1.09059 1.32855 1.32673 1.28221 0.95631 1.07249 0.90211 0.83040 0.74713 0.70187 0.78911 1.19360 1.17881 1.20305 1.20310 1.03553 0.95041 1.39433 0.90437 1.17522 0.94329 0.92284 0.93100 1.20332 1.04885 0.95324 1.01429 1.21115 1.02011 0.96411 1.02200 1.85056 1.47292 1.10580 1.47881 1.24879 1.02703 0.95258 1.00176 0.87936 1.22828 0.95750 1.00764 0.97179 1.23380 0.97174 0.97318 0.85104 1.88847 1.72681 1.37216 1.32420 1.23981 0.93566 0.89700 0.94720 1.20528 1.03785 0.94296 1.03691 1.20265 1.01447 0.96219 1.01712 1.18143 0.94389 0.93216 0.93076 1.41841 1.44334 1.10133 1.44735 0.90812 0.89904 0.89634 0.87498 0.90926 0.87136 0.88688 0.91516 0.86118 0.85802 0.77670 0.77484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.15 12.41 21.82 0.27 -45.87 16 2 C 0.00 0.10 4.91 85.23 0.42 0.52 16 3 Si 1.11 43.89 30.00 68.60 2.06 45.95 16 4 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 5 H -0.25 -9.00 7.11 99.48 0.71 -8.29 16 6 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 7 C -0.55 -28.99 8.40 23.35 0.20 -28.80 16 8 H 0.08 3.82 6.77 -2.91 -0.02 3.80 16 9 C 0.03 1.81 5.29 -21.18 -0.11 1.70 16 10 C -0.19 -10.29 7.67 22.82 0.17 -10.11 16 11 C -0.10 -4.81 6.10 22.58 0.14 -4.67 16 12 S -0.15 -5.76 21.22 -56.49 -1.20 -6.95 16 13 C -0.10 -2.93 2.66 31.90 0.08 -2.85 16 14 H 0.10 3.00 7.25 -2.39 -0.02 2.98 16 15 C -0.13 -2.72 6.62 31.58 0.21 -2.52 16 16 C 0.05 0.94 7.70 72.35 0.56 1.50 16 17 O -0.39 -10.70 11.52 -148.98 -1.72 -12.41 16 18 C 0.06 1.73 6.66 72.67 0.48 2.21 16 19 C -0.20 -8.32 8.73 22.56 0.20 -8.12 16 20 C -0.17 -7.13 9.86 22.34 0.22 -6.91 16 21 C 0.12 5.33 6.79 38.98 0.26 5.60 16 22 N -0.87 -32.56 8.98 -50.30 -0.45 -33.01 16 23 H 0.28 16.40 6.71 -92.71 -0.62 15.78 16 24 H 0.08 4.77 6.59 -2.91 -0.02 4.75 16 25 H 0.09 1.86 7.82 -2.39 -0.02 1.84 16 26 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.10 2.90 6.34 -2.39 -0.02 2.89 16 30 H 0.07 2.05 8.04 -2.39 -0.02 2.04 16 31 H 0.12 4.36 4.35 -2.91 -0.01 4.35 16 32 H 0.12 4.33 8.06 -2.91 -0.02 4.30 16 33 H 0.39 14.76 7.05 -92.71 -0.65 14.10 16 34 H 0.40 11.91 8.83 -92.70 -0.82 11.09 16 Total: -1.00 -61.80 289.07 1.62 -60.19 By element: Atomic # 1 Polarization: 44.75 SS G_CDS: -0.18 Total: 44.57 kcal Atomic # 6 Polarization: -55.29 SS G_CDS: 2.83 Total: -52.45 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -0.18 Total: -78.88 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -1.72 Total: -12.41 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.06 Total: 45.95 kcal Atomic # 16 Polarization: -5.76 SS G_CDS: -1.20 Total: -6.95 kcal Total: -61.80 1.62 -60.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703090553.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.395 kcal (2) G-P(sol) polarization free energy of solvation -61.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds