Wall clock time and date at job start Mon Mar 30 2020 06:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30912 * 1 3 3 Si 1.86805 * 120.00144 * 2 1 4 4 H 1.48502 * 109.46962 * 269.99744 * 3 2 1 5 5 H 1.48507 * 109.46920 * 29.99464 * 3 2 1 6 6 H 1.48496 * 109.47105 * 149.99353 * 3 2 1 7 7 C 1.39863 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00508 * 195.35731 * 7 2 1 9 9 C 1.41038 * 119.99690 * 15.35233 * 7 2 1 10 10 C 1.40634 * 120.26490 * 25.58848 * 9 7 2 11 11 C 1.38066 * 119.76828 * 179.97438 * 10 9 7 12 12 S 1.76201 * 119.84828 * 180.02562 * 11 10 9 13 13 C 1.81397 * 103.00316 * 179.97438 * 12 11 10 14 14 H 1.09001 * 110.45732 * 54.29264 * 13 12 11 15 15 C 1.54502 * 110.51442 * 176.90248 * 13 12 11 16 16 C 1.54481 * 104.06339 * 118.64322 * 15 13 12 17 17 O 1.44419 * 104.80357 * 23.98087 * 16 15 13 18 18 C 1.44644 * 105.36779 * 319.56623 * 17 16 15 19 19 C 1.39674 * 120.30760 * 359.71973 * 11 10 9 20 20 C 1.38021 * 120.54476 * 0.55820 * 19 11 10 21 21 C 1.38765 * 120.22347 * 359.44725 * 20 19 11 22 22 N 1.38834 * 120.15996 * 180.29414 * 21 20 19 23 23 H 0.97002 * 119.99827 * 0.02562 * 1 2 3 24 24 H 1.08007 * 120.11468 * 359.97438 * 10 9 7 25 25 H 1.08994 * 110.51539 * 237.29063 * 15 13 12 26 26 H 1.09005 * 110.51216 * 0.02562 * 15 13 12 27 27 H 1.09003 * 110.37025 * 142.81251 * 16 15 13 28 28 H 1.09002 * 110.37180 * 265.03672 * 16 15 13 29 29 H 1.09004 * 110.34002 * 281.58648 * 18 17 16 30 30 H 1.09005 * 110.50534 * 159.18567 * 18 17 16 31 31 H 1.08008 * 119.73243 * 180.27822 * 19 11 10 32 32 H 1.07999 * 119.88919 * 179.71954 * 20 19 11 33 33 H 0.97008 * 119.99482 * 0.02562 * 22 21 20 34 34 H 0.96998 * 120.00584 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 2.4907 2.0464 -1.4001 5 1 1.4405 2.6528 0.7000 6 1 3.5406 1.4402 0.7002 7 6 2.0085 -1.2112 0.0005 8 1 3.0596 -1.2278 0.2482 9 6 1.3411 -2.4110 -0.3223 10 6 0.1941 -2.3873 -1.1357 11 6 -0.4509 -3.5679 -1.4458 12 16 -1.8878 -3.5407 -2.4653 13 6 -2.3452 -5.2928 -2.5729 14 1 -2.4535 -5.7201 -1.5761 15 6 -3.6517 -5.4627 -3.3798 16 6 -3.2362 -6.3297 -4.5890 17 8 -2.0598 -7.0409 -4.1461 18 6 -1.2928 -6.0779 -3.3868 19 6 0.0339 -4.7845 -0.9603 20 6 1.1551 -4.8222 -0.1563 21 6 1.8208 -3.6490 0.1694 22 7 2.9521 -3.6890 0.9732 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1808 -1.4487 -1.5166 25 1 -4.4053 -5.9761 -2.7828 26 1 -4.0227 -4.4939 -3.7145 27 1 -4.0305 -7.0314 -4.8436 28 1 -2.9999 -5.6981 -5.4454 29 1 -0.7550 -5.4081 -4.0579 30 1 -0.5973 -6.5854 -2.7183 31 1 -0.4754 -5.7030 -1.2123 32 1 1.5182 -5.7683 0.2170 33 1 3.2791 -4.5386 1.3083 34 1 3.4159 -2.8676 1.1992 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703090554.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:43 Heat of formation + Delta-G solvation = -28.548760 kcal Electronic energy + Delta-G solvation = -17494.711885 eV Core-core repulsion = 14711.001493 eV Total energy + Delta-G solvation = -2783.710392 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.04941 -37.79686 -33.67968 -33.26021 -32.03343 -29.79553 -28.97830 -27.59528 -25.15171 -22.92740 -21.74032 -20.88305 -20.39158 -17.48275 -16.79384 -16.59230 -15.77812 -15.55337 -15.14896 -15.11558 -14.63544 -13.97188 -13.07916 -13.01836 -12.76301 -12.51745 -12.15019 -11.85293 -11.66795 -11.46360 -11.33074 -11.26824 -11.11962 -10.79050 -10.50558 -10.01308 -9.86577 -9.71976 -9.57206 -9.28753 -9.17562 -7.66045 -7.39017 -6.73133 -5.96276 -4.21928 2.25884 2.72381 2.98670 3.08723 3.10427 3.16831 3.33040 3.94899 4.10930 4.58399 4.60912 4.81465 5.05816 5.16877 5.25403 5.36723 5.61133 5.67514 5.74082 5.90317 5.94191 6.03265 6.17261 6.33404 6.78495 6.91505 7.00117 7.18839 7.34042 7.52606 7.72291 7.84605 8.09721 8.36804 8.69496 8.78078 8.99783 9.06506 10.25534 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.027284 B = 0.005489 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.986694 B = 5100.020150 C = 5892.785671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.463 4.463 8 H 0.074 0.926 9 C 0.074 3.926 10 C -0.113 4.113 11 C -0.105 4.105 12 S -0.142 6.142 13 C -0.107 4.107 14 H 0.098 0.902 15 C -0.131 4.131 16 C 0.047 3.953 17 O -0.379 6.379 18 C 0.053 3.947 19 C -0.200 4.200 20 C -0.170 4.170 21 C 0.123 3.877 22 N -0.882 5.882 23 H 0.279 0.721 24 H 0.127 0.873 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.378 0.622 34 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.282 -6.430 -4.159 8.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.424 5.424 2 C -0.142 4.142 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.493 4.493 8 H 0.092 0.908 9 C 0.067 3.933 10 C -0.139 4.139 11 C -0.218 4.218 12 S 0.098 5.902 13 C -0.237 4.237 14 H 0.116 0.884 15 C -0.170 4.170 16 C -0.030 4.030 17 O -0.298 6.298 18 C -0.025 4.025 19 C -0.225 4.225 20 C -0.195 4.195 21 C 0.020 3.980 22 N -0.424 5.424 23 H 0.090 0.910 24 H 0.145 0.855 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.203 0.797 34 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -4.124 -5.566 -4.767 8.409 hybrid contribution 1.225 -0.023 1.102 1.648 sum -2.899 -5.589 -3.665 7.285 Atomic orbital electron populations 1.69836 1.07306 1.28948 1.36335 1.25785 0.94738 1.00960 0.92730 0.86341 0.80265 0.81014 0.79209 1.19416 1.20427 1.18877 1.19137 0.96729 0.90879 1.42601 0.90790 1.17112 0.93257 0.90542 0.92401 1.20709 0.97884 0.95205 1.00063 1.20966 0.98662 0.97008 1.05158 1.85062 1.34162 1.06384 1.64551 1.24568 0.98101 0.97841 1.03153 0.88373 1.22774 0.96174 1.01302 0.96752 1.23384 0.88370 0.95100 0.96149 1.89119 1.34435 1.34829 1.71421 1.24118 0.93443 0.91225 0.93764 1.20225 1.00600 0.94503 1.07171 1.19838 0.99256 0.95004 1.05447 1.18018 0.90463 0.93974 0.95515 1.41933 1.31558 1.09659 1.59217 0.90984 0.85516 0.89919 0.89614 0.89184 0.92034 0.90684 0.88223 0.88893 0.89133 0.79683 0.77910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.69 10.88 55.54 0.60 -20.09 16 2 C 0.07 1.85 5.18 -17.34 -0.09 1.76 16 3 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.26 -5.30 7.11 56.52 0.40 -4.89 16 7 C -0.46 -11.79 8.50 -37.91 -0.32 -12.11 16 8 H 0.07 1.78 6.67 -52.49 -0.35 1.42 16 9 C 0.07 1.90 5.58 -106.66 -0.60 1.31 16 10 C -0.11 -2.93 8.39 -38.74 -0.33 -3.26 16 11 C -0.10 -2.44 6.08 -39.11 -0.24 -2.68 16 12 S -0.14 -2.79 20.97 -107.50 -2.25 -5.04 16 13 C -0.11 -1.69 2.73 -25.17 -0.07 -1.76 16 14 H 0.10 1.59 7.44 -51.93 -0.39 1.20 16 15 C -0.13 -1.65 6.76 -25.17 -0.17 -1.82 16 16 C 0.05 0.56 7.64 37.93 0.29 0.85 16 17 O -0.38 -5.70 11.65 -35.23 -0.41 -6.11 16 18 C 0.05 0.82 6.29 37.93 0.24 1.06 16 19 C -0.20 -4.36 8.79 -39.13 -0.34 -4.70 16 20 C -0.17 -3.72 9.86 -39.47 -0.39 -4.11 16 21 C 0.12 2.86 6.79 -83.22 -0.56 2.30 16 22 N -0.88 -17.04 8.98 32.75 0.29 -16.75 16 23 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 24 H 0.13 3.48 6.14 -52.48 -0.32 3.15 16 25 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.09 1.06 7.67 -51.93 -0.40 0.66 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 1.23 7.83 -51.93 -0.41 0.82 16 30 H 0.10 1.56 6.40 -51.93 -0.33 1.23 16 31 H 0.09 1.79 4.09 -52.48 -0.21 1.58 16 32 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.38 6.08 8.83 -40.82 -0.36 5.72 16 34 H 0.39 7.42 7.04 -40.82 -0.29 7.13 16 LS Contribution 288.88 15.07 4.35 4.35 Total: -1.00 -27.84 288.88 -8.91 -36.74 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -3.88 Total: 16.51 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: -2.58 Total: -23.16 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.90 Total: -36.84 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.41 Total: -6.11 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Atomic # 16 Polarization: -2.79 SS G_CDS: -2.25 Total: -5.04 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.84 -8.91 -36.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703090554.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.195 kcal (2) G-P(sol) polarization free energy of solvation -27.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds