Wall clock time and date at job start Mon Mar 30 2020 06:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30912 * 1 3 3 Si 1.86805 * 120.00144 * 2 1 4 4 H 1.48502 * 109.46962 * 269.99744 * 3 2 1 5 5 H 1.48507 * 109.46920 * 29.99464 * 3 2 1 6 6 H 1.48496 * 109.47105 * 149.99353 * 3 2 1 7 7 C 1.39863 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00508 * 195.35731 * 7 2 1 9 9 C 1.41038 * 119.99690 * 15.35233 * 7 2 1 10 10 C 1.40634 * 120.26490 * 25.58848 * 9 7 2 11 11 C 1.38066 * 119.76828 * 179.97438 * 10 9 7 12 12 S 1.76201 * 119.84828 * 180.02562 * 11 10 9 13 13 C 1.81397 * 103.00316 * 179.97438 * 12 11 10 14 14 H 1.09001 * 110.45732 * 54.29264 * 13 12 11 15 15 C 1.54502 * 110.51442 * 176.90248 * 13 12 11 16 16 C 1.54481 * 104.06339 * 118.64322 * 15 13 12 17 17 O 1.44419 * 104.80357 * 23.98087 * 16 15 13 18 18 C 1.44644 * 105.36779 * 319.56623 * 17 16 15 19 19 C 1.39674 * 120.30760 * 359.71973 * 11 10 9 20 20 C 1.38021 * 120.54476 * 0.55820 * 19 11 10 21 21 C 1.38765 * 120.22347 * 359.44725 * 20 19 11 22 22 N 1.38834 * 120.15996 * 180.29414 * 21 20 19 23 23 H 0.97002 * 119.99827 * 0.02562 * 1 2 3 24 24 H 1.08007 * 120.11468 * 359.97438 * 10 9 7 25 25 H 1.08994 * 110.51539 * 237.29063 * 15 13 12 26 26 H 1.09005 * 110.51216 * 0.02562 * 15 13 12 27 27 H 1.09003 * 110.37025 * 142.81251 * 16 15 13 28 28 H 1.09002 * 110.37180 * 265.03672 * 16 15 13 29 29 H 1.09004 * 110.34002 * 281.58648 * 18 17 16 30 30 H 1.09005 * 110.50534 * 159.18567 * 18 17 16 31 31 H 1.08008 * 119.73243 * 180.27822 * 19 11 10 32 32 H 1.07999 * 119.88919 * 179.71954 * 20 19 11 33 33 H 0.97008 * 119.99482 * 0.02562 * 22 21 20 34 34 H 0.96998 * 120.00584 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 2.4907 2.0464 -1.4001 5 1 1.4405 2.6528 0.7000 6 1 3.5406 1.4402 0.7002 7 6 2.0085 -1.2112 0.0005 8 1 3.0596 -1.2278 0.2482 9 6 1.3411 -2.4110 -0.3223 10 6 0.1941 -2.3873 -1.1357 11 6 -0.4509 -3.5679 -1.4458 12 16 -1.8878 -3.5407 -2.4653 13 6 -2.3452 -5.2928 -2.5729 14 1 -2.4535 -5.7201 -1.5761 15 6 -3.6517 -5.4627 -3.3798 16 6 -3.2362 -6.3297 -4.5890 17 8 -2.0598 -7.0409 -4.1461 18 6 -1.2928 -6.0779 -3.3868 19 6 0.0339 -4.7845 -0.9603 20 6 1.1551 -4.8222 -0.1563 21 6 1.8208 -3.6490 0.1694 22 7 2.9521 -3.6890 0.9732 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1808 -1.4487 -1.5166 25 1 -4.4053 -5.9761 -2.7828 26 1 -4.0227 -4.4939 -3.7145 27 1 -4.0305 -7.0314 -4.8436 28 1 -2.9999 -5.6981 -5.4454 29 1 -0.7550 -5.4081 -4.0579 30 1 -0.5973 -6.5854 -2.7183 31 1 -0.4754 -5.7030 -1.2123 32 1 1.5182 -5.7683 0.2170 33 1 3.2791 -4.5386 1.3083 34 1 3.4159 -2.8676 1.1992 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703090554.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:42 Heat of formation + Delta-G solvation = -45.498301 kcal Electronic energy + Delta-G solvation = -17495.446872 eV Core-core repulsion = 14711.001493 eV Total energy + Delta-G solvation = -2784.445379 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.18524 -39.55934 -35.50419 -34.94514 -33.20607 -31.51333 -30.22426 -29.31885 -26.96300 -24.03666 -23.32820 -22.46091 -21.94984 -19.28675 -18.10135 -18.03550 -17.32106 -17.13646 -16.76467 -16.26354 -16.20793 -15.26701 -14.65905 -14.54976 -14.28703 -14.18889 -13.88975 -13.25659 -13.12141 -12.95643 -12.86334 -12.75208 -12.35234 -12.16916 -12.14083 -11.59888 -11.51318 -11.31848 -11.02705 -10.83927 -10.81785 -9.37909 -9.13751 -8.56015 -7.65125 -6.10764 0.81625 0.95971 1.15809 1.39946 1.51249 1.51840 1.74176 2.23734 2.78362 3.01619 3.45433 3.58025 3.67378 3.75397 3.98740 4.18499 4.26274 4.43710 4.52793 4.66879 4.80422 4.81774 4.89279 4.98443 5.10188 5.20658 5.35040 5.54491 5.68924 5.74348 5.92702 6.00994 6.28398 6.52661 6.88251 6.96911 7.22841 7.49948 8.44624 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.027284 B = 0.005489 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.986694 B = 5100.020150 C = 5892.785671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.031 3.969 3 Si 0.977 3.023 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.254 1.254 7 C -0.489 4.489 8 H 0.080 0.920 9 C 0.037 3.963 10 C -0.140 4.140 11 C -0.122 4.122 12 S -0.158 6.158 13 C -0.100 4.100 14 H 0.098 0.902 15 C -0.126 4.126 16 C 0.045 3.955 17 O -0.389 6.389 18 C 0.057 3.943 19 C -0.192 4.192 20 C -0.179 4.179 21 C 0.118 3.882 22 N -0.870 5.870 23 H 0.281 0.719 24 H 0.100 0.900 25 H 0.105 0.895 26 H 0.087 0.913 27 H 0.121 0.879 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.120 0.880 32 H 0.122 0.878 33 H 0.396 0.604 34 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.469 -7.907 -4.330 9.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.182 4.182 3 Si 0.799 3.201 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.178 1.178 7 C -0.520 4.520 8 H 0.098 0.902 9 C 0.030 3.970 10 C -0.166 4.166 11 C -0.235 4.235 12 S 0.083 5.917 13 C -0.229 4.229 14 H 0.116 0.884 15 C -0.165 4.165 16 C -0.032 4.032 17 O -0.308 6.308 18 C -0.021 4.021 19 C -0.216 4.216 20 C -0.204 4.204 21 C 0.013 3.987 22 N -0.412 5.412 23 H 0.092 0.908 24 H 0.118 0.882 25 H 0.124 0.876 26 H 0.106 0.894 27 H 0.139 0.861 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.224 0.776 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -4.286 -7.067 -4.923 9.620 hybrid contribution 1.210 0.265 1.108 1.662 sum -3.076 -6.802 -3.815 8.384 Atomic orbital electron populations 1.69937 1.08866 1.29789 1.37794 1.26620 0.95394 1.04194 0.91977 0.85269 0.79164 0.76585 0.79055 1.19433 1.19993 1.17767 1.19412 0.97146 0.91679 1.43812 0.90163 1.17480 0.94082 0.91985 0.93427 1.20621 0.99172 0.95233 1.01575 1.21201 0.99907 0.96750 1.05669 1.85023 1.32555 1.10585 1.63557 1.24682 0.99940 0.94446 1.03831 0.88387 1.22838 0.94892 1.01912 0.96874 1.23623 0.88088 0.95720 0.95774 1.89115 1.35401 1.34971 1.71355 1.23950 0.93447 0.91097 0.93623 1.20604 1.00280 0.94943 1.05797 1.20231 0.99098 0.95861 1.05202 1.18199 0.91304 0.93635 0.95523 1.41833 1.30331 1.10825 1.58205 0.90815 0.88178 0.87632 0.89407 0.86087 0.91501 0.91830 0.88304 0.86256 0.85989 0.77601 0.77691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.18 10.88 21.82 0.24 -44.95 16 2 C 0.03 1.57 5.18 85.22 0.44 2.01 16 3 Si 0.98 38.80 29.59 68.60 2.03 40.82 16 4 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 6 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 7 C -0.49 -25.60 8.50 23.35 0.20 -25.40 16 8 H 0.08 3.91 6.67 -2.91 -0.02 3.89 16 9 C 0.04 1.95 5.58 -21.18 -0.12 1.84 16 10 C -0.14 -7.57 8.39 22.81 0.19 -7.38 16 11 C -0.12 -5.75 6.08 22.58 0.14 -5.62 16 12 S -0.16 -6.20 20.97 -56.49 -1.18 -7.39 16 13 C -0.10 -2.97 2.73 31.61 0.09 -2.88 16 14 H 0.10 2.95 7.44 -2.39 -0.02 2.93 16 15 C -0.13 -2.83 6.76 31.61 0.21 -2.61 16 16 C 0.04 0.92 7.64 72.49 0.55 1.48 16 17 O -0.39 -10.68 11.65 -148.98 -1.74 -12.42 16 18 C 0.06 1.69 6.29 72.48 0.46 2.15 16 19 C -0.19 -8.15 8.79 22.57 0.20 -7.95 16 20 C -0.18 -7.54 9.86 22.34 0.22 -7.32 16 21 C 0.12 5.44 6.79 38.98 0.26 5.70 16 22 N -0.87 -32.62 8.98 -50.30 -0.45 -33.07 16 23 H 0.28 14.02 8.30 -92.71 -0.77 13.25 16 24 H 0.10 5.84 6.14 -2.91 -0.02 5.82 16 25 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.09 1.96 7.67 -2.38 -0.02 1.95 16 27 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 2.02 7.83 -2.39 -0.02 2.01 16 30 H 0.10 2.90 6.40 -2.38 -0.02 2.88 16 31 H 0.12 4.35 4.09 -2.91 -0.01 4.34 16 32 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 33 H 0.40 11.90 8.83 -92.70 -0.82 11.08 16 34 H 0.39 14.65 7.04 -92.71 -0.65 13.99 16 Total: -1.00 -61.59 288.88 1.42 -60.17 By element: Atomic # 1 Polarization: 43.14 SS G_CDS: -0.32 Total: 42.81 kcal Atomic # 6 Polarization: -48.83 SS G_CDS: 2.84 Total: -45.99 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -0.21 Total: -78.02 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -1.74 Total: -12.42 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.82 kcal Atomic # 16 Polarization: -6.20 SS G_CDS: -1.18 Total: -7.39 kcal Total: -61.59 1.42 -60.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703090554.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.670 kcal (2) G-P(sol) polarization free energy of solvation -61.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds