Wall clock time and date at job start Mon Mar 30 2020 06:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00216 * 2 1 4 4 H 1.48501 * 109.46916 * 269.99959 * 3 2 1 5 5 H 1.48496 * 109.47089 * 29.99982 * 3 2 1 6 6 H 1.48501 * 109.47024 * 150.00245 * 3 2 1 7 7 C 1.37872 * 119.99453 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00356 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99814 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47067 * 180.02562 * 9 7 2 11 11 C 1.34771 * 119.99842 * 179.97438 * 10 9 7 12 12 O 1.21700 * 120.00032 * 0.02562 * 11 10 9 13 13 C 1.46389 * 119.99990 * 179.97438 * 11 10 9 14 14 C 1.34854 * 120.00030 * 173.30697 * 13 11 10 15 15 C 1.47153 * 119.99840 * 349.68690 * 14 13 11 16 16 C 1.39872 * 120.18040 * 310.71612 * 15 14 13 17 17 C 1.37837 * 119.83941 * 179.74824 * 16 15 14 18 18 C 1.38464 * 120.20345 * 0.54922 * 17 16 15 19 19 C 1.38317 * 120.36509 * 359.70103 * 18 17 16 20 20 C 1.38074 * 120.16024 * 0.02562 * 19 18 17 21 21 Cl 1.73601 * 120.10688 * 179.97438 * 20 19 18 22 22 H 0.97006 * 119.99559 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47112 * 60.00292 * 9 7 2 24 24 H 1.09001 * 109.46873 * 299.99783 * 9 7 2 25 25 H 0.96998 * 120.00346 * 0.02562 * 10 9 7 26 26 H 1.07991 * 119.99841 * 353.30985 * 13 11 10 27 27 H 1.07999 * 120.00076 * 169.97008 * 14 13 11 28 28 H 1.07999 * 120.08308 * 359.97438 * 16 15 14 29 29 H 1.07993 * 119.89814 * 180.25177 * 17 16 15 30 30 H 1.07999 * 119.81237 * 179.72333 * 18 17 16 31 31 H 1.08000 * 119.91889 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9998 -2.5754 0.0001 11 6 5.3248 -2.8217 -0.0009 12 8 6.1157 -1.8968 -0.0014 13 6 5.8127 -4.2019 -0.0002 14 6 7.1309 -4.4512 -0.1373 15 6 8.0498 -3.3650 -0.5129 16 6 7.7538 -2.5384 -1.6017 17 6 8.6170 -1.5198 -1.9442 18 6 9.7807 -1.3202 -1.2210 19 6 10.0844 -2.1359 -0.1459 20 6 9.2277 -3.1572 0.2138 21 17 9.6106 -4.1805 1.5629 22 1 -0.4850 0.8401 -0.0004 23 1 3.8752 -0.6798 0.8894 24 1 3.8745 -0.6810 -0.8906 25 1 3.3694 -3.3127 0.0001 26 1 5.1169 -5.0205 0.1100 27 1 7.5114 -5.4489 0.0241 28 1 6.8492 -2.6955 -2.1705 29 1 8.3873 -0.8785 -2.7822 30 1 10.4547 -0.5230 -1.4976 31 1 10.9939 -1.9735 0.4134 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705968816.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:12 Heat of formation + Delta-G solvation = -18.512386 kcal Electronic energy + Delta-G solvation = -16987.071615 eV Core-core repulsion = 14065.919632 eV Total energy + Delta-G solvation = -2921.151983 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.98703 -39.66128 -37.37915 -36.23196 -34.80066 -34.39219 -31.63661 -31.04694 -29.62882 -25.54058 -23.91683 -23.39659 -22.31425 -20.72633 -19.13105 -18.26046 -17.46084 -17.10127 -16.40563 -16.30205 -15.95505 -15.57588 -15.15691 -14.78224 -14.71614 -14.26446 -14.05461 -13.99923 -13.59043 -13.04891 -12.72034 -12.60550 -12.39724 -12.35975 -11.94820 -11.72610 -11.66089 -11.02559 -10.92379 -10.69329 -9.91448 -9.55447 -9.20280 -8.40776 -6.47622 -0.23180 0.35370 0.81585 1.16319 1.31275 1.33779 1.46269 2.26988 2.39832 2.58329 2.78461 2.95026 3.68508 3.89295 3.99060 4.13856 4.39841 4.42247 4.54380 4.75781 4.79279 4.95828 5.03524 5.06806 5.19240 5.28145 5.33671 5.48605 5.54631 5.58874 5.92252 6.09916 6.53796 6.89209 7.15711 7.45053 8.74125 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.027343 B = 0.004850 C = 0.004466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.778761 B = 5771.434290 C = 6268.601410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.236 3.764 10 N -0.701 5.701 11 C 0.518 3.482 12 O -0.576 6.576 13 C -0.195 4.195 14 C -0.031 4.031 15 C -0.063 4.063 16 C -0.056 4.056 17 C -0.135 4.135 18 C -0.103 4.103 19 C -0.128 4.128 20 C -0.036 4.036 21 Cl -0.068 7.068 22 H 0.272 0.728 23 H 0.009 0.991 24 H 0.013 0.987 25 H 0.408 0.592 26 H 0.169 0.831 27 H 0.169 0.831 28 H 0.112 0.888 29 H 0.138 0.862 30 H 0.156 0.844 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.267 -8.544 -2.039 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.187 1.187 7 C -0.585 4.585 8 H 0.077 0.923 9 C 0.112 3.888 10 N -0.350 5.350 11 C 0.308 3.692 12 O -0.458 6.458 13 C -0.215 4.215 14 C -0.051 4.051 15 C -0.064 4.064 16 C -0.075 4.075 17 C -0.153 4.153 18 C -0.121 4.121 19 C -0.147 4.147 20 C -0.062 4.062 21 Cl -0.039 7.039 22 H 0.081 0.919 23 H 0.027 0.973 24 H 0.030 0.970 25 H 0.243 0.757 26 H 0.187 0.813 27 H 0.186 0.814 28 H 0.130 0.870 29 H 0.156 0.844 30 H 0.173 0.827 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 20.640 -7.856 -1.911 22.167 hybrid contribution -0.698 0.491 0.218 0.881 sum 19.942 -7.364 -1.694 21.326 Atomic orbital electron populations 1.69989 1.07702 1.28590 1.50779 1.25595 0.95515 1.02640 0.93591 0.85857 0.79171 0.79365 0.79486 1.18811 1.19892 1.18664 1.21320 0.90095 0.94548 1.52538 0.92336 1.19035 0.93169 0.81146 0.95491 1.46028 1.06863 1.09624 1.72510 1.19169 0.82140 0.91085 0.76808 1.90819 1.55283 1.47684 1.52036 1.23200 0.97198 0.94918 1.06207 1.22577 0.91783 0.98698 0.92002 1.18951 0.93535 0.97694 0.96240 1.21138 0.97292 0.93710 0.95351 1.21345 0.94922 0.97789 1.01208 1.21447 0.97201 0.99135 0.94364 1.21169 1.00215 0.94670 0.98645 1.21145 0.96388 0.96546 0.92161 1.98338 1.93923 1.67183 1.44497 0.91860 0.97299 0.96960 0.75688 0.81343 0.81369 0.86959 0.84444 0.82655 0.83262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.77 13.96 21.45 0.30 -55.48 16 2 C 0.03 1.52 5.47 84.65 0.46 1.98 16 3 Si 0.94 44.18 27.47 68.60 1.88 46.07 16 4 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.26 -12.34 6.54 99.48 0.65 -11.68 16 7 C -0.55 -30.27 9.83 25.60 0.25 -30.01 16 8 H 0.06 3.40 7.84 -2.91 -0.02 3.38 16 9 C 0.24 11.53 4.50 85.64 0.38 11.92 16 10 N -0.70 -27.90 5.54 -471.12 -2.61 -30.51 16 11 C 0.52 18.98 7.00 86.37 0.60 19.58 16 12 O -0.58 -24.64 12.46 -4.35 -0.05 -24.69 16 13 C -0.19 -5.03 9.94 23.62 0.23 -4.79 16 14 C -0.03 -0.74 8.86 23.83 0.21 -0.53 16 15 C -0.06 -1.77 4.31 -20.13 -0.09 -1.86 16 16 C -0.06 -1.65 6.78 22.57 0.15 -1.50 16 17 C -0.13 -3.47 10.03 22.23 0.22 -3.25 16 18 C -0.10 -2.30 10.04 22.34 0.22 -2.08 16 19 C -0.13 -2.97 9.82 22.25 0.22 -2.75 16 20 C -0.04 -0.93 6.36 22.65 0.14 -0.79 16 21 Cl -0.07 -1.56 28.04 -2.72 -0.08 -1.64 16 22 H 0.27 15.17 8.31 -92.70 -0.77 14.40 16 23 H 0.01 0.47 7.20 -2.39 -0.02 0.46 16 24 H 0.01 0.63 7.57 -2.39 -0.02 0.61 16 25 H 0.41 14.21 8.30 -92.71 -0.77 13.44 16 26 H 0.17 3.07 8.06 -2.92 -0.02 3.05 16 27 H 0.17 2.81 8.04 -2.91 -0.02 2.79 16 28 H 0.11 3.40 7.53 -2.91 -0.02 3.38 16 29 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 30 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 31 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -68.13 288.17 2.79 -65.34 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.33 Total: 14.97 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: 3.03 Total: -14.06 kcal Atomic # 7 Polarization: -83.67 SS G_CDS: -2.31 Total: -85.98 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.05 Total: -24.69 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.88 Total: 46.07 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.64 kcal Total: -68.13 2.79 -65.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705968816.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.826 kcal (2) G-P(sol) polarization free energy of solvation -68.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds