Wall clock time and date at job start Mon Mar 30 2020 06:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46835 * 2 1 4 4 C 1.53007 * 109.47022 * 119.99760 * 2 1 3 5 5 C 1.50696 * 109.46850 * 184.99881 * 4 2 1 6 6 H 1.07999 * 120.00005 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99916 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99728 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00047 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47088 * 90.00252 * 9 7 5 11 11 H 1.48496 * 109.47286 * 210.00333 * 9 7 5 12 12 H 1.48506 * 109.46872 * 330.00279 * 9 7 5 13 13 O 1.42899 * 109.47014 * 240.00131 * 2 1 3 14 14 C 1.35701 * 117.00244 * 84.95799 * 13 2 1 15 15 C 1.38588 * 120.14070 * 354.51454 * 14 13 2 16 16 C 1.38242 * 120.08440 * 179.97438 * 15 14 13 17 17 Cl 1.73599 * 119.82469 * 179.97438 * 16 15 14 18 18 C 1.38666 * 120.36046 * 0.02562 * 16 15 14 19 19 C 1.37775 * 120.28235 * 359.97323 * 18 16 15 20 20 C 1.39741 * 119.91230 * 359.79089 * 19 18 16 21 21 C 1.43205 * 120.18008 * 180.25255 * 20 19 18 22 22 N 4.92662 * 114.05729 * 229.51939 * 2 1 3 23 23 H 1.09001 * 109.47144 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47203 * 299.99758 * 1 2 3 25 25 H 1.08998 * 109.47124 * 59.99774 * 1 2 3 26 26 H 1.09003 * 109.46529 * 65.00454 * 4 2 1 27 27 H 1.08993 * 109.47531 * 305.00204 * 4 2 1 28 28 H 0.97001 * 119.99569 * 180.02562 * 8 7 5 29 29 H 1.08005 * 119.95901 * 359.95623 * 15 14 13 30 30 H 1.07997 * 119.86063 * 180.02562 * 18 16 15 31 31 H 1.07997 * 120.04661 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0855 0.5396 7 6 4.2304 -1.1935 2.3578 8 7 5.5411 -1.1002 2.4134 9 14 3.3015 -2.1085 3.6955 10 1 3.1699 -3.5384 3.3171 11 1 4.0454 -2.0018 4.9763 12 1 1.9508 -1.5127 3.8563 13 8 2.0063 -0.6736 -1.1668 14 6 2.1115 0.0613 -2.3027 15 6 1.6586 1.3709 -2.3287 16 6 1.7668 2.1186 -3.4864 17 17 1.1968 3.7582 -3.5116 18 6 2.3273 1.5659 -4.6280 19 6 2.7824 0.2655 -4.6188 20 6 2.6832 -0.4993 -3.4535 21 6 3.1593 -1.8498 -3.4361 22 7 3.5383 -2.9205 -3.4218 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.7516 -1.7715 1.2056 27 1 1.6054 -0.2618 2.1370 28 1 6.0255 -1.5076 3.1485 29 1 1.2204 1.8077 -1.4435 30 1 2.4082 2.1576 -5.5278 31 1 3.2186 -0.1610 -5.5100 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709962309.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:35 Heat of formation + Delta-G solvation = 1.798746 kcal Electronic energy + Delta-G solvation = -17147.837172 eV Core-core repulsion = 14227.565946 eV Total energy + Delta-G solvation = -2920.271226 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.36562 -37.91884 -36.74646 -35.86537 -33.65952 -31.98331 -31.12812 -29.93752 -28.13262 -23.91934 -23.72370 -22.49901 -20.31242 -19.20274 -17.61947 -16.83991 -16.25611 -15.58294 -15.09018 -14.72601 -14.36373 -13.77940 -13.50028 -13.15587 -13.01375 -12.93635 -12.72579 -12.38562 -12.22832 -11.97063 -11.88653 -11.75412 -11.34997 -11.11038 -11.00072 -10.79180 -10.29465 -9.99928 -9.74304 -9.32642 -8.98117 -8.59945 -8.19107 -6.09099 -4.08403 0.61771 1.24732 1.90584 2.96901 2.99340 3.27224 3.33573 3.34350 3.40293 3.88550 4.09116 4.39162 4.65903 4.89555 5.00132 5.21919 5.28936 5.33752 5.40103 5.45405 5.67541 5.79634 5.91943 6.01217 6.08885 6.27476 6.37672 6.41674 6.92784 7.00562 7.58524 7.69152 7.83913 8.43480 8.93932 9.50824 11.04201 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.019415 B = 0.005875 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.814291 B = 4764.881449 C = 5453.330063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.091 3.909 3 H 0.075 0.925 4 C -0.011 4.011 5 C -0.521 4.521 6 H 0.073 0.927 7 C 0.070 3.930 8 N -0.898 5.898 9 Si 0.877 3.123 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.266 1.266 13 O -0.276 6.276 14 C 0.212 3.788 15 C -0.210 4.210 16 C 0.033 3.967 17 Cl -0.064 7.064 18 C -0.165 4.165 19 C -0.020 4.020 20 C -0.068 4.068 21 C 0.265 3.735 22 N -0.414 5.414 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.025 0.975 27 H 0.041 0.959 28 H 0.264 0.736 29 H 0.152 0.848 30 H 0.141 0.859 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.749 8.437 -12.650 18.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.036 3.964 3 H 0.093 0.907 4 C -0.048 4.048 5 C -0.559 4.559 6 H 0.091 0.909 7 C -0.132 4.132 8 N -0.536 5.536 9 Si 0.705 3.295 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.190 1.190 13 O -0.186 6.186 14 C 0.159 3.841 15 C -0.230 4.230 16 C 0.006 3.994 17 Cl -0.035 7.035 18 C -0.184 4.184 19 C -0.040 4.040 20 C -0.073 4.073 21 C -0.050 4.050 22 N -0.090 5.090 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.169 0.831 30 H 0.159 0.841 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.017 6.659 -12.437 17.302 hybrid contribution -0.564 0.274 0.945 1.134 sum -10.582 6.933 -11.491 17.091 Atomic orbital electron populations 1.22475 0.96207 1.03073 1.02222 1.22820 0.92125 0.97469 0.84020 0.90660 1.19760 0.98340 0.96311 0.90385 1.20962 0.89187 1.35910 1.09803 0.90873 1.24986 0.94746 0.95671 0.97825 1.69903 1.06514 1.44945 1.32248 0.86822 0.80312 0.80805 0.81607 1.20173 1.21220 1.19029 1.86320 1.78527 1.37736 1.16063 1.18937 0.89223 0.89150 0.86742 1.21171 1.08461 0.93855 0.99466 1.20859 0.97573 0.86053 0.94928 1.98383 1.87345 1.19086 1.98725 1.20736 1.03953 0.95699 0.98020 1.20884 0.94915 0.92395 0.95855 1.15400 1.08973 0.88711 0.94167 1.25142 0.93670 0.92350 0.93866 1.81182 1.08988 1.11681 1.07137 0.91621 0.90820 0.92629 0.95657 0.94081 0.92616 0.83081 0.84090 0.83673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 9.17 37.16 0.34 -2.23 16 2 C 0.09 1.66 2.17 -26.73 -0.06 1.60 16 3 H 0.08 1.32 6.31 -51.93 -0.33 0.99 16 4 C -0.01 -0.25 3.75 -27.88 -0.10 -0.35 16 5 C -0.52 -14.53 9.43 -34.44 -0.32 -14.86 16 6 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 7 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 8 N -0.90 -27.67 13.96 55.43 0.77 -26.90 16 9 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 13 O -0.28 -5.36 8.98 -18.81 -0.17 -5.53 16 14 C 0.21 3.38 6.60 -38.72 -0.26 3.12 16 15 C -0.21 -2.81 8.01 -39.45 -0.32 -3.13 16 16 C 0.03 0.38 6.32 -39.42 -0.25 0.13 16 17 Cl -0.06 -0.66 28.94 -51.86 -1.50 -2.16 16 18 C -0.17 -1.62 9.80 -39.59 -0.39 -2.01 16 19 C -0.02 -0.21 9.75 -39.19 -0.38 -0.59 16 20 C -0.07 -1.00 5.75 -106.67 -0.61 -1.61 16 21 C 0.26 4.63 14.87 -22.47 -0.33 4.29 16 22 N -0.41 -8.17 18.54 41.83 0.78 -7.39 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.67 6.91 -51.93 -0.36 0.31 16 26 H 0.03 0.59 7.57 -51.93 -0.39 0.19 16 27 H 0.04 0.89 7.20 -51.93 -0.37 0.52 16 28 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.15 1.92 5.42 -52.48 -0.28 1.63 16 30 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 31 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 291.86 15.07 4.40 4.40 Total: -1.00 -31.90 291.86 -6.19 -38.09 By element: Atomic # 1 Polarization: -0.50 SS G_CDS: -3.02 Total: -3.52 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -2.78 Total: -13.72 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 1.55 Total: -34.29 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.17 Total: -5.53 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.90 -6.19 -38.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709962309.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.885 kcal (2) G-P(sol) polarization free energy of solvation -31.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds