Wall clock time and date at job start Mon Mar 30 2020 06:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46835 * 2 1 4 4 C 1.53007 * 109.47022 * 119.99760 * 2 1 3 5 5 C 1.50696 * 109.46850 * 184.99881 * 4 2 1 6 6 H 1.07999 * 120.00005 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99916 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99728 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00047 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47088 * 90.00252 * 9 7 5 11 11 H 1.48496 * 109.47286 * 210.00333 * 9 7 5 12 12 H 1.48506 * 109.46872 * 330.00279 * 9 7 5 13 13 O 1.42899 * 109.47014 * 240.00131 * 2 1 3 14 14 C 1.35701 * 117.00244 * 84.95799 * 13 2 1 15 15 C 1.38588 * 120.14070 * 354.51454 * 14 13 2 16 16 C 1.38242 * 120.08440 * 179.97438 * 15 14 13 17 17 Cl 1.73599 * 119.82469 * 179.97438 * 16 15 14 18 18 C 1.38666 * 120.36046 * 0.02562 * 16 15 14 19 19 C 1.37775 * 120.28235 * 359.97323 * 18 16 15 20 20 C 1.39741 * 119.91230 * 359.79089 * 19 18 16 21 21 C 1.43205 * 120.18008 * 180.25255 * 20 19 18 22 22 N 4.92662 * 114.05729 * 229.51939 * 2 1 3 23 23 H 1.09001 * 109.47144 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47203 * 299.99758 * 1 2 3 25 25 H 1.08998 * 109.47124 * 59.99774 * 1 2 3 26 26 H 1.09003 * 109.46529 * 65.00454 * 4 2 1 27 27 H 1.08993 * 109.47531 * 305.00204 * 4 2 1 28 28 H 0.97001 * 119.99569 * 180.02562 * 8 7 5 29 29 H 1.08005 * 119.95901 * 359.95623 * 15 14 13 30 30 H 1.07997 * 119.86063 * 180.02562 * 18 16 15 31 31 H 1.07997 * 120.04661 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0855 0.5396 7 6 4.2304 -1.1935 2.3578 8 7 5.5411 -1.1002 2.4134 9 14 3.3015 -2.1085 3.6955 10 1 3.1699 -3.5384 3.3171 11 1 4.0454 -2.0018 4.9763 12 1 1.9508 -1.5127 3.8563 13 8 2.0063 -0.6736 -1.1668 14 6 2.1115 0.0613 -2.3027 15 6 1.6586 1.3709 -2.3287 16 6 1.7668 2.1186 -3.4864 17 17 1.1968 3.7582 -3.5116 18 6 2.3273 1.5659 -4.6280 19 6 2.7824 0.2655 -4.6188 20 6 2.6832 -0.4993 -3.4535 21 6 3.1593 -1.8498 -3.4361 22 7 3.5383 -2.9205 -3.4218 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.7516 -1.7715 1.2056 27 1 1.6054 -0.2618 2.1370 28 1 6.0255 -1.5076 3.1485 29 1 1.2204 1.8077 -1.4435 30 1 2.4082 2.1576 -5.5278 31 1 3.2186 -0.1610 -5.5100 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709962309.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:35 Heat of formation + Delta-G solvation = -17.541252 kcal Electronic energy + Delta-G solvation = -17148.675817 eV Core-core repulsion = 14227.565946 eV Total energy + Delta-G solvation = -2921.109871 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.52265 -39.08049 -37.82667 -37.08049 -35.46233 -33.73787 -32.21735 -31.01300 -29.83644 -25.21237 -24.95762 -23.97326 -21.71925 -20.37182 -19.00907 -18.74976 -17.42949 -16.61966 -16.47689 -16.23840 -15.67363 -15.14346 -14.82607 -14.58488 -14.42991 -14.14315 -14.04258 -13.93522 -13.60822 -13.53951 -13.15155 -12.94068 -12.62350 -12.45399 -12.14507 -11.96444 -11.87425 -11.72149 -11.44937 -11.28361 -10.79946 -9.97250 -9.30047 -8.30762 -6.34709 -0.42374 0.26714 0.99717 1.33670 1.35489 1.45839 1.63373 1.81236 2.17114 2.33495 2.71581 2.91383 3.05869 3.72943 3.83725 4.01207 4.05978 4.15584 4.29901 4.36867 4.56823 4.79844 4.82594 4.95941 5.05742 5.10446 5.14306 5.18336 5.31633 5.52283 5.59647 6.19981 6.34876 6.51496 6.71486 7.28144 8.86276 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.019415 B = 0.005875 C = 0.005133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.814291 B = 4764.881449 C = 5453.330063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.091 3.909 3 H 0.076 0.924 4 C -0.013 4.013 5 C -0.523 4.523 6 H 0.029 0.971 7 C 0.002 3.998 8 N -0.952 5.952 9 Si 0.948 3.052 10 H -0.278 1.278 11 H -0.283 1.283 12 H -0.233 1.233 13 O -0.314 6.314 14 C 0.184 3.816 15 C -0.214 4.214 16 C 0.035 3.965 17 Cl -0.048 7.048 18 C -0.146 4.146 19 C -0.002 4.002 20 C -0.091 4.091 21 C 0.282 3.718 22 N -0.469 5.469 23 H 0.062 0.938 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.020 0.980 27 H 0.059 0.941 28 H 0.265 0.735 29 H 0.155 0.845 30 H 0.180 0.820 31 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.062 9.976 -13.645 21.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.037 3.963 3 H 0.094 0.906 4 C -0.050 4.050 5 C -0.561 4.561 6 H 0.047 0.953 7 C -0.195 4.195 8 N -0.593 5.593 9 Si 0.771 3.229 10 H -0.203 1.203 11 H -0.209 1.209 12 H -0.155 1.155 13 O -0.227 6.227 14 C 0.134 3.866 15 C -0.233 4.233 16 C 0.007 3.993 17 Cl -0.019 7.019 18 C -0.165 4.165 19 C -0.022 4.022 20 C -0.096 4.096 21 C -0.032 4.032 22 N -0.146 5.146 23 H 0.081 0.919 24 H 0.111 0.889 25 H 0.096 0.904 26 H 0.038 0.962 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.173 0.827 30 H 0.197 0.803 31 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -12.360 8.225 -13.453 20.035 hybrid contribution 0.203 -0.037 1.080 1.100 sum -12.156 8.189 -12.372 19.181 Atomic orbital electron populations 1.22383 0.92615 1.03561 1.04257 1.22686 0.94772 0.96431 0.82459 0.90646 1.19740 0.94694 0.96811 0.93767 1.21305 0.92174 1.34465 1.08162 0.95312 1.26020 0.95615 0.96937 1.00899 1.70076 1.08651 1.46939 1.33585 0.85702 0.80323 0.78991 0.77913 1.20329 1.20862 1.15547 1.86222 1.79918 1.39259 1.17257 1.19169 0.91156 0.90267 0.86034 1.21181 1.08626 0.92970 1.00537 1.21038 0.96862 0.86611 0.94742 1.98397 1.87071 1.17747 1.98669 1.21188 1.01393 0.95262 0.98624 1.21282 0.93378 0.92208 0.95307 1.15744 1.10382 0.87881 0.95595 1.25711 0.92381 0.92798 0.92337 1.81172 1.11200 1.13323 1.08910 0.91888 0.88885 0.90447 0.96182 0.92291 0.92625 0.82722 0.80251 0.80266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.46 9.17 71.98 0.66 -3.80 16 2 C 0.09 3.32 2.17 30.60 0.07 3.39 16 3 H 0.08 2.65 6.31 -2.39 -0.02 2.64 16 4 C -0.01 -0.59 3.75 29.85 0.11 -0.47 16 5 C -0.52 -30.19 9.43 25.60 0.24 -29.94 16 6 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 7 C 0.00 0.11 5.47 84.65 0.46 0.57 16 8 N -0.95 -61.02 13.96 21.45 0.30 -60.72 16 9 Si 0.95 44.37 27.47 68.60 1.88 46.25 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.23 -9.57 6.54 99.48 0.65 -8.92 16 13 O -0.31 -12.48 8.98 -90.21 -0.81 -13.29 16 14 C 0.18 5.86 6.60 22.83 0.15 6.01 16 15 C -0.21 -5.42 8.01 22.35 0.18 -5.24 16 16 C 0.04 0.70 6.32 22.37 0.14 0.84 16 17 Cl -0.05 -0.84 28.94 -2.72 -0.08 -0.92 16 18 C -0.15 -2.29 9.80 22.26 0.22 -2.07 16 19 C 0.00 -0.03 9.75 22.52 0.22 0.19 16 20 C -0.09 -2.63 5.75 -21.19 -0.12 -2.76 16 21 C 0.28 10.08 14.87 88.33 1.31 11.39 16 22 N -0.47 -19.25 18.54 19.00 0.35 -18.90 16 23 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 25 H 0.08 1.68 6.91 -2.39 -0.02 1.66 16 26 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 27 H 0.06 2.44 7.20 -2.39 -0.02 2.42 16 28 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 29 H 0.16 3.71 5.42 -2.91 -0.02 3.69 16 30 H 0.18 1.52 8.06 -2.91 -0.02 1.50 16 31 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -73.87 291.86 6.39 -67.48 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: 1.10 Total: 1.98 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: 3.64 Total: -21.89 kcal Atomic # 7 Polarization: -80.27 SS G_CDS: 0.65 Total: -79.61 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: -0.81 Total: -13.29 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.25 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.92 kcal Total: -73.87 6.39 -67.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709962309.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.937 kcal (2) G-P(sol) polarization free energy of solvation -73.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds