Wall clock time and date at job start Mon Mar 30 2020 06:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 120.00006 * 2 1 4 4 H 1.48499 * 109.47114 * 90.04344 * 3 2 1 5 5 H 1.48493 * 109.46987 * 210.04684 * 3 2 1 6 6 H 1.48505 * 109.47052 * 330.04355 * 3 2 1 7 7 C 1.37876 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00026 * 353.35705 * 7 2 1 9 9 C 1.50703 * 119.99779 * 173.35711 * 7 2 1 10 10 O 1.45193 * 112.85129 * 297.67138 * 9 7 2 11 11 C 1.34706 * 117.00335 * 295.52953 * 10 9 7 12 12 O 1.21473 * 119.99818 * 3.30826 * 11 10 9 13 13 C 1.47729 * 120.00479 * 183.31307 * 11 10 9 14 14 C 1.39612 * 120.54806 * 3.77759 * 13 11 10 15 15 N 1.31645 * 120.61415 * 179.97438 * 14 13 11 16 16 C 1.31951 * 121.91224 * 359.97438 * 15 14 13 17 17 C 1.38541 * 121.05785 * 359.97438 * 16 15 14 18 18 F 1.35095 * 120.37306 * 180.02562 * 17 16 15 19 19 C 1.38605 * 119.25654 * 359.75162 * 17 16 15 20 20 C 1.53782 * 113.61073 * 166.47525 * 9 7 2 21 21 C 1.53953 * 87.01762 * 220.04756 * 20 9 7 22 22 C 1.53779 * 87.11286 * 25.36432 * 21 20 9 23 23 H 0.97003 * 119.99523 * 359.97438 * 1 2 3 24 24 H 1.07993 * 119.69285 * 359.97438 * 14 13 11 25 25 H 1.07996 * 119.46951 * 179.97438 * 16 15 14 26 26 H 1.08002 * 120.87000 * 180.26694 * 19 17 16 27 27 H 1.08998 * 113.61987 * 334.57057 * 20 9 7 28 28 H 1.09004 * 113.61048 * 105.47096 * 20 9 7 29 29 H 1.09001 * 113.53873 * 270.81112 * 21 20 9 30 30 H 1.09003 * 113.74247 * 139.94811 * 21 20 9 31 31 H 1.08997 * 113.61632 * 220.08408 * 22 21 20 32 32 H 1.09004 * 113.68730 * 89.19685 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4976 2.0459 1.4001 5 1 3.5462 1.4404 -0.7010 6 1 1.4462 2.6529 -0.6991 7 6 2.0046 -1.1941 0.0005 8 1 1.4700 -2.1261 0.1091 9 6 3.5040 -1.1985 -0.1504 10 8 3.9445 -0.6489 -1.4201 11 6 3.5901 -1.3201 -2.5330 12 8 2.8809 -2.3027 -2.4496 13 6 4.0639 -0.8612 -3.8548 14 6 4.9425 0.2190 -3.9580 15 7 5.3659 0.6287 -5.1352 16 6 4.9849 0.0448 -6.2555 17 6 4.1158 -1.0339 -6.2395 18 9 3.7351 -1.6216 -7.3948 19 6 3.6456 -1.5071 -5.0245 20 6 4.1539 -2.5487 0.1950 21 6 5.2763 -1.7435 0.8746 22 6 4.2471 -0.6166 1.0637 23 1 -0.4849 0.8401 0.0004 24 1 5.2778 0.7231 -3.0637 25 1 5.3566 0.4138 -7.2000 26 1 2.9706 -2.3491 -4.9814 27 1 3.5671 -3.1511 0.8886 28 1 4.4853 -3.1100 -0.6787 29 1 6.0925 -1.4809 0.2016 30 1 5.6237 -2.1792 1.8114 31 1 4.6537 0.3797 0.8904 32 1 3.6853 -0.6884 1.9950 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810857074.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:25 Heat of formation + Delta-G solvation = -59.321354 kcal Electronic energy + Delta-G solvation = -20063.656809 eV Core-core repulsion = 16712.398841 eV Total energy + Delta-G solvation = -3351.257968 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.10847 -40.43237 -39.40432 -37.26804 -34.55890 -32.59504 -32.44351 -31.13770 -27.12688 -25.17095 -25.04659 -23.65066 -22.45639 -21.00555 -18.70222 -17.99508 -17.44012 -17.07936 -16.78153 -15.98005 -15.69281 -15.46843 -15.13067 -14.51178 -14.21493 -13.95921 -13.37404 -13.28313 -13.14856 -12.81562 -12.42419 -11.93279 -11.64222 -11.53072 -11.13963 -10.56353 -10.36502 -10.21254 -10.10804 -10.00038 -9.93712 -9.53485 -9.13189 -9.06489 -8.82717 -8.50102 -6.24462 -4.30047 0.45839 0.88374 2.97379 3.14586 3.24655 3.36973 3.45045 3.79493 3.93249 4.23019 4.33991 4.59355 4.72675 4.80617 5.05701 5.13579 5.36592 5.46712 5.56333 5.60019 5.78724 5.90566 6.12105 6.20336 6.39827 6.49513 6.52838 6.65308 6.88495 7.10047 7.32602 7.57425 7.62171 8.29296 8.66719 8.85916 9.37210 10.86120 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021604 B = 0.006907 C = 0.006508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.773098 B = 4053.054559 C = 4301.475376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.083 3.917 3 Si 0.861 3.139 4 H -0.275 1.275 5 H -0.236 1.236 6 H -0.291 1.291 7 C -0.514 4.514 8 H 0.084 0.916 9 C 0.193 3.807 10 O -0.349 6.349 11 C 0.504 3.496 12 O -0.476 6.476 13 C -0.130 4.130 14 C 0.140 3.860 15 N -0.465 5.465 16 C 0.092 3.908 17 C 0.037 3.963 18 F -0.128 7.128 19 C -0.054 4.054 20 C -0.139 4.139 21 C -0.145 4.145 22 C -0.126 4.126 23 H 0.267 0.733 24 H 0.179 0.821 25 H 0.171 0.829 26 H 0.162 0.838 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.136 0.148 -7.750 13.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.122 4.122 3 Si 0.688 3.312 4 H -0.201 1.201 5 H -0.159 1.159 6 H -0.217 1.217 7 C -0.551 4.551 8 H 0.102 0.898 9 C 0.159 3.841 10 O -0.266 6.266 11 C 0.345 3.655 12 O -0.362 6.362 13 C -0.134 4.134 14 C -0.017 4.017 15 N -0.173 5.173 16 C -0.066 4.066 17 C 0.015 3.985 18 F -0.106 7.106 19 C -0.081 4.081 20 C -0.176 4.176 21 C -0.182 4.182 22 C -0.164 4.164 23 H 0.076 0.924 24 H 0.196 0.804 25 H 0.188 0.812 26 H 0.179 0.821 27 H 0.107 0.893 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.309 0.640 -7.747 13.723 hybrid contribution -0.605 0.043 -0.193 0.637 sum 10.704 0.682 -7.941 13.345 Atomic orbital electron populations 1.69949 1.06563 1.27465 1.47520 1.25047 0.94659 0.99501 0.93041 0.87118 0.81987 0.83104 0.79035 1.20122 1.15906 1.21749 1.21043 0.88276 0.95193 1.50578 0.89798 1.21161 0.94637 0.90894 0.77401 1.86558 1.71558 1.52937 1.15595 1.20276 0.78784 0.82000 0.84420 1.90818 1.32514 1.25490 1.87411 1.20575 1.01016 0.98831 0.92959 1.23374 0.90827 0.91449 0.96093 1.67830 1.23188 1.28288 0.97945 1.23122 0.93573 0.91436 0.98481 1.18588 1.00854 0.96771 0.82238 1.91534 1.89896 1.83021 1.46198 1.21825 0.97220 0.99390 0.89617 1.23305 0.96847 0.97397 1.00087 1.22949 0.96855 0.98313 1.00130 1.23221 0.96894 0.97607 0.98638 0.92351 0.80381 0.81224 0.82061 0.89332 0.92520 0.90949 0.92133 0.92157 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.36 13.96 55.43 0.77 -25.59 16 2 C 0.08 2.33 5.47 -17.82 -0.10 2.24 16 3 Si 0.86 20.67 25.15 -169.99 -4.28 16.39 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.24 -5.27 5.42 56.52 0.31 -4.96 16 6 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 7 C -0.51 -14.13 7.91 -34.44 -0.27 -14.40 16 8 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 9 C 0.19 4.39 0.10 -90.96 -0.01 4.38 16 10 O -0.35 -7.62 7.11 -40.51 -0.29 -7.91 16 11 C 0.50 10.66 7.28 34.61 0.25 10.91 16 12 O -0.48 -11.40 14.60 -19.25 -0.28 -11.68 16 13 C -0.13 -2.21 5.89 -104.84 -0.62 -2.82 16 14 C 0.14 2.11 10.79 -17.12 -0.18 1.93 16 15 N -0.46 -6.45 10.34 -12.85 -0.13 -6.58 16 16 C 0.09 1.09 11.16 -17.39 -0.19 0.90 16 17 C 0.04 0.48 7.33 -39.33 -0.29 0.19 16 18 F -0.13 -1.58 17.28 2.25 0.04 -1.55 16 19 C -0.05 -0.81 9.70 -38.78 -0.38 -1.19 16 20 C -0.14 -2.76 6.92 -25.83 -0.18 -2.94 16 21 C -0.15 -2.44 8.03 -25.83 -0.21 -2.65 16 22 C -0.13 -2.48 5.65 -25.92 -0.15 -2.63 16 23 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 24 H 0.18 2.53 7.63 -52.49 -0.40 2.13 16 25 H 0.17 1.42 8.06 -52.49 -0.42 0.99 16 26 H 0.16 2.37 7.74 -52.49 -0.41 1.97 16 27 H 0.09 1.76 8.09 -51.93 -0.42 1.34 16 28 H 0.06 1.12 7.38 -51.93 -0.38 0.74 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.14 6.79 -51.93 -0.35 0.79 16 32 H 0.10 1.91 8.09 -51.93 -0.42 1.49 16 LS Contribution 280.75 15.07 4.23 4.23 Total: -1.00 -30.95 280.75 -5.56 -36.51 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -3.30 Total: 2.25 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -2.32 Total: -6.09 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.64 Total: -32.17 kcal Atomic # 8 Polarization: -19.01 SS G_CDS: -0.57 Total: -19.58 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.28 Total: 16.39 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.95 -5.56 -36.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857074.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.814 kcal (2) G-P(sol) polarization free energy of solvation -30.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds