Wall clock time and date at job start Mon Mar 30 2020 06:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86799 * 120.00006 * 2 1 4 4 H 1.48499 * 109.47114 * 90.04344 * 3 2 1 5 5 H 1.48493 * 109.46987 * 210.04684 * 3 2 1 6 6 H 1.48505 * 109.47052 * 330.04355 * 3 2 1 7 7 C 1.37876 * 119.99890 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00026 * 353.35705 * 7 2 1 9 9 C 1.50703 * 119.99779 * 173.35711 * 7 2 1 10 10 O 1.45193 * 112.85129 * 297.67138 * 9 7 2 11 11 C 1.34706 * 117.00335 * 295.52953 * 10 9 7 12 12 O 1.21473 * 119.99818 * 3.30826 * 11 10 9 13 13 C 1.47729 * 120.00479 * 183.31307 * 11 10 9 14 14 C 1.39612 * 120.54806 * 3.77759 * 13 11 10 15 15 N 1.31645 * 120.61415 * 179.97438 * 14 13 11 16 16 C 1.31951 * 121.91224 * 359.97438 * 15 14 13 17 17 C 1.38541 * 121.05785 * 359.97438 * 16 15 14 18 18 F 1.35095 * 120.37306 * 180.02562 * 17 16 15 19 19 C 1.38605 * 119.25654 * 359.75162 * 17 16 15 20 20 C 1.53782 * 113.61073 * 166.47525 * 9 7 2 21 21 C 1.53953 * 87.01762 * 220.04756 * 20 9 7 22 22 C 1.53779 * 87.11286 * 25.36432 * 21 20 9 23 23 H 0.97003 * 119.99523 * 359.97438 * 1 2 3 24 24 H 1.07993 * 119.69285 * 359.97438 * 14 13 11 25 25 H 1.07996 * 119.46951 * 179.97438 * 16 15 14 26 26 H 1.08002 * 120.87000 * 180.26694 * 19 17 16 27 27 H 1.08998 * 113.61987 * 334.57057 * 20 9 7 28 28 H 1.09004 * 113.61048 * 105.47096 * 20 9 7 29 29 H 1.09001 * 113.53873 * 270.81112 * 21 20 9 30 30 H 1.09003 * 113.74247 * 139.94811 * 21 20 9 31 31 H 1.08997 * 113.61632 * 220.08408 * 22 21 20 32 32 H 1.09004 * 113.68730 * 89.19685 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4976 2.0459 1.4001 5 1 3.5462 1.4404 -0.7010 6 1 1.4462 2.6529 -0.6991 7 6 2.0046 -1.1941 0.0005 8 1 1.4700 -2.1261 0.1091 9 6 3.5040 -1.1985 -0.1504 10 8 3.9445 -0.6489 -1.4201 11 6 3.5901 -1.3201 -2.5330 12 8 2.8809 -2.3027 -2.4496 13 6 4.0639 -0.8612 -3.8548 14 6 4.9425 0.2190 -3.9580 15 7 5.3659 0.6287 -5.1352 16 6 4.9849 0.0448 -6.2555 17 6 4.1158 -1.0339 -6.2395 18 9 3.7351 -1.6216 -7.3948 19 6 3.6456 -1.5071 -5.0245 20 6 4.1539 -2.5487 0.1950 21 6 5.2763 -1.7435 0.8746 22 6 4.2471 -0.6166 1.0637 23 1 -0.4849 0.8401 0.0004 24 1 5.2778 0.7231 -3.0637 25 1 5.3566 0.4138 -7.2000 26 1 2.9706 -2.3491 -4.9814 27 1 3.5671 -3.1511 0.8886 28 1 4.4853 -3.1100 -0.6787 29 1 6.0925 -1.4809 0.2016 30 1 5.6237 -2.1792 1.8114 31 1 4.6537 0.3797 0.8904 32 1 3.6853 -0.6884 1.9950 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810857074.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:24 Heat of formation + Delta-G solvation = -79.064640 kcal Electronic energy + Delta-G solvation = -20064.512942 eV Core-core repulsion = 16712.398841 eV Total energy + Delta-G solvation = -3352.114101 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -50.13229 -41.84611 -40.83125 -38.89978 -36.25383 -34.58515 -33.78578 -32.27835 -29.04351 -26.65574 -26.52033 -24.78532 -24.13384 -22.47848 -20.26801 -19.66617 -18.85469 -18.35238 -18.03381 -17.33613 -17.02011 -16.95435 -16.88273 -16.26988 -15.70310 -15.05196 -14.93878 -14.70459 -14.52450 -14.40998 -13.71346 -13.48559 -13.32287 -13.25619 -12.95121 -12.24695 -12.03195 -11.95356 -11.73060 -11.58406 -11.20854 -11.03798 -10.87533 -10.63825 -10.40502 -10.21197 -8.39813 -6.50596 -0.72502 -0.24623 1.31539 1.33942 1.53305 1.56960 1.74500 2.33084 2.49929 2.81019 2.97841 3.16478 3.48892 3.53626 3.59505 3.83348 3.87944 4.00518 4.14782 4.31071 4.51900 4.60426 4.78685 4.84556 4.94729 5.05523 5.09004 5.27872 5.32198 5.51044 5.53506 5.76451 6.24254 6.48857 6.58029 6.96039 7.21446 8.75408 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021604 B = 0.006907 C = 0.006508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.773098 B = 4053.054559 C = 4301.475376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.024 3.976 3 Si 0.922 3.078 4 H -0.256 1.256 5 H -0.207 1.207 6 H -0.299 1.299 7 C -0.519 4.519 8 H 0.027 0.973 9 C 0.174 3.826 10 O -0.343 6.343 11 C 0.501 3.499 12 O -0.520 6.520 13 C -0.155 4.155 14 C 0.151 3.849 15 N -0.468 5.468 16 C 0.118 3.882 17 C 0.043 3.957 18 F -0.122 7.122 19 C -0.059 4.059 20 C -0.144 4.144 21 C -0.116 4.116 22 C -0.125 4.125 23 H 0.267 0.733 24 H 0.189 0.811 25 H 0.215 0.785 26 H 0.153 0.847 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.632 2.029 -8.943 17.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.175 4.175 3 Si 0.744 3.256 4 H -0.181 1.181 5 H -0.129 1.129 6 H -0.226 1.226 7 C -0.556 4.556 8 H 0.045 0.955 9 C 0.140 3.860 10 O -0.260 6.260 11 C 0.345 3.655 12 O -0.409 6.409 13 C -0.159 4.159 14 C -0.006 4.006 15 N -0.176 5.176 16 C -0.040 4.040 17 C 0.022 3.978 18 F -0.101 7.101 19 C -0.085 4.085 20 C -0.182 4.182 21 C -0.153 4.153 22 C -0.163 4.163 23 H 0.076 0.924 24 H 0.206 0.794 25 H 0.232 0.768 26 H 0.171 0.829 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 14.839 2.510 -8.935 17.502 hybrid contribution -1.743 -0.674 0.013 1.869 sum 13.096 1.836 -8.921 15.952 Atomic orbital electron populations 1.70111 1.08698 1.28418 1.50260 1.25983 0.95348 1.03618 0.92594 0.86175 0.81515 0.77608 0.80270 1.18096 1.12860 1.22561 1.21172 0.91213 0.92987 1.50199 0.95498 1.21293 0.92069 0.93933 0.78726 1.86499 1.71148 1.52818 1.15540 1.21012 0.77714 0.81235 0.85585 1.90802 1.34680 1.27431 1.88019 1.20256 1.03649 1.01071 0.90903 1.23470 0.89693 0.90310 0.97168 1.67979 1.23322 1.28350 0.97928 1.23816 0.91185 0.89547 0.99470 1.18527 1.00828 0.96965 0.81489 1.91559 1.89863 1.83013 1.45625 1.21850 0.97189 0.99221 0.90285 1.23299 0.98244 0.96426 1.00195 1.22849 0.95586 0.95383 1.01483 1.23222 0.97144 0.99456 0.96436 0.92384 0.79434 0.76843 0.82922 0.90436 0.93014 0.88819 0.88956 0.90487 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.06 13.96 21.45 0.30 -58.76 16 2 C 0.02 1.41 5.47 84.65 0.46 1.87 16 3 Si 0.92 42.39 25.15 68.60 1.73 44.12 16 4 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.21 -8.43 5.42 99.48 0.54 -7.89 16 6 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 7 C -0.52 -29.86 7.91 25.60 0.20 -29.65 16 8 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 9 C 0.17 7.92 0.10 -11.01 0.00 7.92 16 10 O -0.34 -14.65 7.11 -56.15 -0.40 -15.05 16 11 C 0.50 21.40 7.28 70.33 0.51 21.92 16 12 O -0.52 -26.16 14.60 19.93 0.29 -25.87 16 13 C -0.16 -5.12 5.89 -20.01 -0.12 -5.23 16 14 C 0.15 4.13 10.79 85.05 0.92 5.04 16 15 N -0.47 -11.15 10.34 -194.56 -2.01 -13.17 16 16 C 0.12 2.29 11.16 84.75 0.95 3.23 16 17 C 0.04 1.00 7.33 22.43 0.16 1.16 16 18 F -0.12 -2.69 17.28 44.97 0.78 -1.91 16 19 C -0.06 -1.73 9.70 22.79 0.22 -1.50 16 20 C -0.14 -5.71 6.92 31.18 0.22 -5.50 16 21 C -0.12 -3.51 8.03 31.18 0.25 -3.26 16 22 C -0.13 -4.61 5.65 31.12 0.18 -4.43 16 23 H 0.27 15.76 8.31 -92.71 -0.77 14.98 16 24 H 0.19 4.71 7.63 -2.91 -0.02 4.68 16 25 H 0.22 2.27 8.06 -2.91 -0.02 2.24 16 26 H 0.15 4.64 7.74 -2.91 -0.02 4.62 16 27 H 0.08 3.18 8.09 -2.39 -0.02 3.16 16 28 H 0.05 2.07 7.38 -2.38 -0.02 2.05 16 29 H 0.09 2.49 8.14 -2.39 -0.02 2.48 16 30 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.08 2.59 6.79 -2.39 -0.02 2.57 16 32 H 0.09 3.52 8.09 -2.38 -0.02 3.50 16 Total: -1.00 -71.84 280.75 5.61 -66.23 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.98 Total: 12.84 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: 3.95 Total: -8.44 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -1.71 Total: -71.93 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -0.11 Total: -40.91 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.78 Total: -1.91 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.73 Total: 44.12 kcal Total: -71.84 5.61 -66.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857074.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.840 kcal (2) G-P(sol) polarization free energy of solvation -71.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds