Wall clock time and date at job start Mon Mar 30 2020 06:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.34530 * 123.87727 * 80.55714 * 3 2 1 5 5 S 1.70276 * 111.21542 * 179.97438 * 4 3 2 6 6 C 1.70280 * 93.19775 * 359.97438 * 5 4 3 7 7 C 1.34768 * 111.14546 * 359.73736 * 6 5 4 8 8 C 1.46930 * 123.90499 * 180.25464 * 7 6 5 9 9 O 1.21568 * 120.00114 * 180.21207 * 8 7 6 10 10 O 1.34817 * 120.00187 * 0.20722 * 8 7 6 11 11 C 1.45195 * 117.00142 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47120 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47252 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47164 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99741 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99924 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99799 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99943 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47490 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.47240 * 119.99254 * 18 16 14 21 21 H 1.48497 * 109.47409 * 239.99722 * 18 16 14 22 22 H 1.07998 * 124.39040 * 0.02562 * 4 3 2 23 23 H 1.08003 * 124.43259 * 180.02562 * 6 5 4 24 24 H 1.09003 * 109.46934 * 299.99957 * 11 10 8 25 25 H 1.08997 * 109.47648 * 59.99987 * 11 10 8 26 26 H 1.09003 * 109.46951 * 299.99664 * 12 11 10 27 27 H 1.08996 * 109.47516 * 59.99709 * 12 11 10 28 28 H 1.08995 * 109.47099 * 300.00038 * 13 12 11 29 29 H 1.09004 * 109.46870 * 59.99782 * 13 12 11 30 30 H 0.97004 * 119.99391 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3179 -0.1823 -1.1018 5 16 4.9793 -0.1196 -0.7337 6 6 4.6992 0.1569 0.9230 7 6 3.3794 0.2066 1.1912 8 6 2.8236 0.4371 2.5317 9 8 1.6191 0.4644 2.6938 10 8 3.6493 0.6182 3.5818 11 6 3.0305 0.8402 4.8764 12 6 4.1180 1.0239 5.9368 13 6 3.4659 1.2585 7.3009 14 6 4.5372 1.4389 8.3454 15 1 5.5788 1.3906 8.0645 16 6 4.1873 1.6645 9.6598 17 7 2.9188 1.7227 10.0019 18 14 5.5151 1.8873 10.9546 19 1 6.8518 1.7777 10.3170 20 1 5.3743 3.2255 11.5829 21 1 5.3750 0.8355 11.9935 22 1 2.9181 -0.3466 -2.0915 23 1 5.4774 0.2812 1.6615 24 1 2.4101 1.7354 4.8338 25 1 2.4115 -0.0188 5.1354 26 1 4.7387 0.1289 5.9795 27 1 4.7367 1.8831 5.6777 28 1 2.8455 2.1536 7.2579 29 1 2.8470 0.3995 7.5602 30 1 2.6727 1.8818 10.9266 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814611146.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:30 Heat of formation + Delta-G solvation = -38.985745 kcal Electronic energy + Delta-G solvation = -16232.089854 eV Core-core repulsion = 13312.093786 eV Total energy + Delta-G solvation = -2919.996068 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.43975 -38.38402 -36.33563 -36.07511 -34.01667 -31.81396 -30.80844 -27.29317 -26.10526 -23.95221 -22.69722 -20.70830 -20.37551 -18.52932 -17.94350 -16.96582 -16.38536 -16.35495 -15.62128 -14.64129 -14.48969 -14.29201 -13.87278 -13.62035 -13.40826 -13.04171 -12.80601 -12.50409 -12.22995 -12.14287 -11.93406 -11.67611 -11.00580 -10.68894 -10.67936 -10.45026 -10.43593 -9.76631 -9.62019 -9.54651 -9.17069 -9.01614 -8.40674 -6.05021 -4.08289 0.20284 0.84849 0.88131 1.26385 2.51689 2.73426 2.79083 3.29013 3.33211 3.36507 3.40371 3.80225 4.28787 4.42073 4.76356 4.87225 5.03163 5.31057 5.34665 5.52105 5.54557 5.58881 5.97756 6.39471 6.50328 6.77443 6.94409 7.38265 7.58588 7.69060 7.80783 7.93163 8.33718 8.98214 9.56179 11.06441 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.034575 B = 0.003304 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.631837 B = 8472.649813 C = 9256.530103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C 0.271 3.729 3 C 0.003 3.997 4 C -0.227 4.227 5 S 0.310 5.690 6 C -0.197 4.197 7 C -0.111 4.111 8 C 0.518 3.482 9 O -0.498 6.498 10 O -0.350 6.350 11 C 0.069 3.931 12 C -0.108 4.108 13 C 0.023 3.977 14 C -0.521 4.521 15 H 0.058 0.942 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.184 0.816 23 H 0.193 0.807 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.182 -4.198 -24.466 25.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.070 5.070 2 C -0.047 4.047 3 C -0.013 4.013 4 C -0.368 4.368 5 S 0.579 5.421 6 C -0.335 4.335 7 C -0.126 4.126 8 C 0.359 3.641 9 O -0.386 6.386 10 O -0.267 6.267 11 C -0.003 4.003 12 C -0.146 4.146 13 C -0.014 4.014 14 C -0.560 4.560 15 H 0.076 0.924 16 C -0.145 4.145 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.201 0.799 23 H 0.210 0.790 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 6.268 -4.297 -25.074 26.200 hybrid contribution -0.507 0.322 1.912 2.004 sum 5.761 -3.975 -23.162 24.197 Atomic orbital electron populations 1.81197 1.11611 1.07315 1.06875 1.24602 0.91511 0.94558 0.94030 1.15564 0.86141 1.07568 0.91990 1.25244 1.00343 1.08065 1.03120 1.82094 1.00337 1.62371 0.97324 1.25743 1.00192 1.03738 1.03839 1.18970 0.92198 1.10083 0.91350 1.20189 0.84972 0.74104 0.84815 1.90913 1.15777 1.46288 1.85664 1.86537 1.40645 1.81388 1.18111 1.23582 0.97642 1.01711 0.77408 1.21773 0.96672 1.01770 0.94342 1.19065 0.96339 0.97492 0.88523 1.21196 0.92973 1.49266 0.92524 0.92350 1.25039 0.95437 0.95301 0.98745 1.69980 1.15723 1.49559 1.18021 0.86487 0.81957 0.77733 0.81535 1.19657 1.20968 1.20975 0.79870 0.79011 0.91293 0.91286 0.92062 0.92063 0.96184 0.96191 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -6.33 18.54 41.83 0.78 -5.56 16 2 C 0.27 3.69 13.96 -22.47 -0.31 3.38 16 3 C 0.00 0.04 5.85 -106.35 -0.62 -0.59 16 4 C -0.23 -1.33 10.70 29.42 0.31 -1.02 16 5 S 0.31 1.24 22.77 -107.50 -2.45 -1.20 16 6 C -0.20 -1.46 10.49 29.50 0.31 -1.15 16 7 C -0.11 -1.25 5.99 -104.68 -0.63 -1.87 16 8 C 0.52 8.08 7.92 34.25 0.27 8.35 16 9 O -0.50 -9.44 15.16 -19.32 -0.29 -9.74 16 10 O -0.35 -5.63 9.88 -40.81 -0.40 -6.03 16 11 C 0.07 1.27 5.48 37.16 0.20 1.47 16 12 C -0.11 -2.18 5.53 -26.73 -0.15 -2.33 16 13 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 18 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H 0.18 0.58 8.06 -52.49 -0.42 0.15 16 23 H 0.19 1.19 8.01 -52.48 -0.42 0.77 16 24 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 296.92 15.07 4.47 4.47 Total: -1.00 -34.11 296.92 -6.26 -40.37 By element: Atomic # 1 Polarization: -3.03 SS G_CDS: -2.92 Total: -5.96 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -1.16 Total: -6.69 kcal Atomic # 7 Polarization: -33.12 SS G_CDS: 1.51 Total: -31.61 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.70 Total: -15.77 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 1.24 SS G_CDS: -2.45 Total: -1.20 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -34.11 -6.26 -40.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814611146.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.386 kcal (2) G-P(sol) polarization free energy of solvation -34.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds