Wall clock time and date at job start Mon Mar 30 2020 06:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.34530 * 123.87727 * 80.55714 * 3 2 1 5 5 S 1.70276 * 111.21542 * 179.97438 * 4 3 2 6 6 C 1.70280 * 93.19775 * 359.97438 * 5 4 3 7 7 C 1.34768 * 111.14546 * 359.73736 * 6 5 4 8 8 C 1.46930 * 123.90499 * 180.25464 * 7 6 5 9 9 O 1.21568 * 120.00114 * 180.21207 * 8 7 6 10 10 O 1.34817 * 120.00187 * 0.20722 * 8 7 6 11 11 C 1.45195 * 117.00142 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47120 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47252 * 179.97438 * 12 11 10 14 14 C 1.50700 * 109.47164 * 179.97438 * 13 12 11 15 15 H 1.07996 * 119.99741 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99924 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99799 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 119.99943 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47490 * 359.97438 * 18 16 14 20 20 H 1.48508 * 109.47240 * 119.99254 * 18 16 14 21 21 H 1.48497 * 109.47409 * 239.99722 * 18 16 14 22 22 H 1.07998 * 124.39040 * 0.02562 * 4 3 2 23 23 H 1.08003 * 124.43259 * 180.02562 * 6 5 4 24 24 H 1.09003 * 109.46934 * 299.99957 * 11 10 8 25 25 H 1.08997 * 109.47648 * 59.99987 * 11 10 8 26 26 H 1.09003 * 109.46951 * 299.99664 * 12 11 10 27 27 H 1.08996 * 109.47516 * 59.99709 * 12 11 10 28 28 H 1.08995 * 109.47099 * 300.00038 * 13 12 11 29 29 H 1.09004 * 109.46870 * 59.99782 * 13 12 11 30 30 H 0.97004 * 119.99391 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3179 -0.1823 -1.1018 5 16 4.9793 -0.1196 -0.7337 6 6 4.6992 0.1569 0.9230 7 6 3.3794 0.2066 1.1912 8 6 2.8236 0.4371 2.5317 9 8 1.6191 0.4644 2.6938 10 8 3.6493 0.6182 3.5818 11 6 3.0305 0.8402 4.8764 12 6 4.1180 1.0239 5.9368 13 6 3.4659 1.2585 7.3009 14 6 4.5372 1.4389 8.3454 15 1 5.5788 1.3906 8.0645 16 6 4.1873 1.6645 9.6598 17 7 2.9188 1.7227 10.0019 18 14 5.5151 1.8873 10.9546 19 1 6.8518 1.7777 10.3170 20 1 5.3743 3.2255 11.5829 21 1 5.3750 0.8355 11.9935 22 1 2.9181 -0.3466 -2.0915 23 1 5.4774 0.2812 1.6615 24 1 2.4101 1.7354 4.8338 25 1 2.4115 -0.0188 5.1354 26 1 4.7387 0.1289 5.9795 27 1 4.7367 1.8831 5.6777 28 1 2.8455 2.1536 7.2579 29 1 2.8470 0.3995 7.5602 30 1 2.6727 1.8818 10.9266 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814611146.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:18:29 Heat of formation + Delta-G solvation = -60.364989 kcal Electronic energy + Delta-G solvation = -16233.016928 eV Core-core repulsion = 13312.093786 eV Total energy + Delta-G solvation = -2920.923142 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.61312 -39.25738 -37.68703 -37.07185 -35.93952 -33.71606 -31.58700 -29.06139 -27.03178 -25.42375 -24.01224 -22.18648 -21.66363 -19.38522 -18.91037 -18.46611 -17.76114 -17.73775 -16.74233 -16.47642 -15.85899 -15.14658 -15.13324 -14.74401 -14.32294 -14.08669 -13.96143 -13.93062 -13.74040 -13.51914 -13.40165 -12.85444 -12.50436 -12.47017 -12.26726 -12.11634 -11.78218 -11.45011 -11.44560 -11.22468 -10.58540 -10.23373 -9.52642 -8.21906 -6.33771 -0.38336 -0.00936 0.40851 0.70938 1.41721 1.42612 1.46915 1.56503 1.63960 1.70500 2.38798 2.41730 3.03430 3.12331 3.65972 3.73075 3.97096 4.03726 4.26648 4.38017 4.52507 4.65439 4.78581 4.80910 4.98572 5.06927 5.33283 5.49426 5.62618 5.79781 6.18045 6.42344 6.58363 6.82890 7.36137 8.90695 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.034575 B = 0.003304 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.631837 B = 8472.649813 C = 9256.530103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C 0.289 3.711 3 C -0.040 4.040 4 C -0.208 4.208 5 S 0.448 5.552 6 C -0.197 4.197 7 C -0.148 4.148 8 C 0.514 3.486 9 O -0.545 6.545 10 O -0.343 6.343 11 C 0.079 3.921 12 C -0.090 4.090 13 C 0.023 3.977 14 C -0.540 4.540 15 H 0.069 0.931 16 C -0.004 4.004 17 N -0.936 5.936 18 Si 0.971 3.029 19 H -0.256 1.256 20 H -0.280 1.280 21 H -0.280 1.280 22 H 0.215 0.785 23 H 0.205 0.795 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.072 0.928 28 H -0.006 1.006 29 H -0.006 1.006 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.177 -4.575 -26.696 29.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.027 4.027 3 C -0.055 4.055 4 C -0.349 4.349 5 S 0.717 5.283 6 C -0.335 4.335 7 C -0.163 4.163 8 C 0.359 3.641 9 O -0.437 6.437 10 O -0.259 6.259 11 C 0.005 3.995 12 C -0.128 4.128 13 C -0.014 4.014 14 C -0.578 4.578 15 H 0.087 0.913 16 C -0.202 4.202 17 N -0.576 5.576 18 Si 0.795 3.205 19 H -0.180 1.180 20 H -0.205 1.205 21 H -0.205 1.205 22 H 0.232 0.768 23 H 0.223 0.777 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.013 0.987 29 H 0.013 0.987 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.286 -4.680 -27.334 29.578 hybrid contribution -1.577 0.407 2.417 2.914 sum 8.709 -4.272 -24.917 26.739 Atomic orbital electron populations 1.81177 1.13524 1.10242 1.08865 1.25308 0.92473 0.92685 0.92283 1.15625 0.84485 1.12110 0.93314 1.25789 1.01954 1.03963 1.03162 1.81849 0.96654 1.57332 0.92470 1.26112 0.98800 1.01289 1.07319 1.18712 0.93851 1.14698 0.89056 1.21068 0.84514 0.72558 0.85965 1.90891 1.17716 1.48796 1.86340 1.86506 1.40310 1.81646 1.17425 1.23169 0.96727 1.00949 0.78612 1.21448 0.96676 1.02659 0.92002 1.18961 0.95723 0.95204 0.91511 1.21656 0.93858 1.48925 0.93357 0.91267 1.26058 0.97872 0.94830 1.01415 1.70125 1.18146 1.50644 1.18710 0.85305 0.79260 0.77661 0.78250 1.17983 1.20528 1.20539 0.76790 0.77750 0.92255 0.92244 0.90950 0.90954 0.98719 0.98728 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -15.82 18.54 19.00 0.35 -15.46 16 2 C 0.29 8.17 13.96 88.33 1.23 9.40 16 3 C -0.04 -0.77 5.85 -20.98 -0.12 -0.90 16 4 C -0.21 -1.59 10.70 66.97 0.72 -0.87 16 5 S 0.45 1.03 22.77 -56.49 -1.29 -0.26 16 6 C -0.20 -2.23 10.49 67.02 0.70 -1.52 16 7 C -0.15 -3.18 5.99 -19.90 -0.12 -3.30 16 8 C 0.51 16.53 7.92 70.10 0.56 17.08 16 9 O -0.55 -22.11 15.16 19.61 0.30 -21.82 16 10 O -0.34 -11.10 9.88 -57.30 -0.57 -11.66 16 11 C 0.08 3.00 5.48 71.98 0.39 3.39 16 12 C -0.09 -3.68 5.53 30.60 0.17 -3.51 16 13 C 0.02 1.23 4.97 29.85 0.15 1.38 16 14 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 15 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 16 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 17 N -0.94 -57.44 13.29 21.45 0.28 -57.16 16 18 Si 0.97 43.78 29.54 68.60 2.03 45.80 16 19 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H 0.22 0.25 8.06 -2.91 -0.02 0.23 16 23 H 0.21 1.74 8.01 -2.91 -0.02 1.72 16 24 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 25 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 26 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 28 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 29 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 30 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -79.85 296.92 6.65 -73.21 By element: Atomic # 1 Polarization: -5.07 SS G_CDS: 1.16 Total: -3.91 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 4.37 Total: -8.74 kcal Atomic # 7 Polarization: -73.26 SS G_CDS: 0.64 Total: -72.62 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: -0.27 Total: -33.48 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -1.29 Total: -0.26 kcal Total: -79.85 6.65 -73.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814611146.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.842 kcal (2) G-P(sol) polarization free energy of solvation -79.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds