Wall clock time and date at job start Mon Mar 30 2020 06:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31527 * 1 3 3 Si 1.86799 * 120.00399 * 2 1 4 4 H 1.48497 * 109.47165 * 270.00115 * 3 2 1 5 5 H 1.48504 * 109.46965 * 29.99560 * 3 2 1 6 6 H 1.48495 * 109.47311 * 149.99659 * 3 2 1 7 7 C 1.38711 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00251 * 180.02562 * 7 2 1 9 9 O 1.34701 * 120.00433 * 0.02562 * 7 2 1 10 10 N 1.21797 * 117.00728 * 180.02562 * 9 7 2 11 11 C 1.29591 * 120.00545 * 180.02562 * 10 9 7 12 12 C 1.47474 * 120.00109 * 174.29100 * 11 10 9 13 13 C 1.39710 * 120.14223 * 359.97438 * 12 11 10 14 14 C 1.37895 * 119.85408 * 180.02562 * 13 12 11 15 15 C 1.38513 * 120.14109 * 0.27700 * 14 13 12 16 16 Cl 1.73595 * 119.85427 * 179.70068 * 15 14 13 17 17 C 1.38520 * 120.28827 * 359.44443 * 15 14 13 18 18 C 1.37884 * 120.14449 * 0.55651 * 17 15 14 19 19 C 1.50704 * 119.99516 * 354.28196 * 11 10 9 20 20 C 1.52996 * 117.50236 * 313.35228 * 19 11 10 21 21 C 1.52996 * 117.49797 * 244.68826 * 19 11 10 22 22 H 0.97001 * 119.99735 * 0.02562 * 1 2 3 23 23 H 1.07995 * 120.07902 * 0.04606 * 13 12 11 24 24 H 1.07998 * 119.92761 * 180.02562 * 14 13 12 25 25 H 1.07995 * 119.92513 * 180.25526 * 17 15 14 26 26 H 1.07993 * 120.07632 * 179.74423 * 18 17 15 27 27 H 1.09001 * 115.54723 * 99.02031 * 19 11 10 28 28 H 1.09000 * 117.49780 * 0.02562 * 20 19 11 29 29 H 1.08999 * 117.50026 * 145.02266 * 20 19 11 30 30 H 1.08999 * 117.49896 * 214.98116 * 21 19 11 31 31 H 1.08996 * 117.50035 * 0.02562 * 21 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4468 2.6527 0.7000 6 1 3.5469 1.4401 0.7001 7 6 2.0088 -1.2013 0.0005 8 1 3.0888 -1.2014 0.0010 9 8 1.3353 -2.3679 0.0005 10 7 1.9986 -3.3894 0.0015 11 6 1.4103 -4.5441 0.0011 12 6 2.2080 -5.7781 -0.1248 13 6 3.5981 -5.7057 -0.2443 14 6 4.3381 -6.8633 -0.3622 15 6 3.7056 -8.0955 -0.3681 16 17 4.6438 -9.5477 -0.5247 17 6 2.3282 -8.1744 -0.2442 18 6 1.5766 -7.0245 -0.1257 19 6 -0.0891 -4.6258 0.1294 20 6 -0.7522 -3.7792 1.2177 21 6 -0.6553 -5.2981 1.3817 22 1 -0.4850 0.8401 -0.0004 23 1 4.0921 -4.7454 -0.2440 24 1 5.4128 -6.8087 -0.4542 25 1 1.8415 -9.1385 -0.2454 26 1 0.5025 -7.0871 -0.0333 27 1 -0.6341 -4.7613 -0.8048 28 1 -0.1040 -3.1628 1.8406 29 1 -1.7337 -3.3582 0.9997 30 1 -1.5731 -5.8756 1.2715 31 1 0.0566 -5.6809 2.1129 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821229286.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:52 Heat of formation + Delta-G solvation = 63.604438 kcal Electronic energy + Delta-G solvation = -17034.303027 eV Core-core repulsion = 14116.711897 eV Total energy + Delta-G solvation = -2917.591130 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.34979 -38.77788 -36.66335 -36.00699 -33.30118 -31.94672 -30.70459 -29.32156 -25.56869 -23.59076 -22.37211 -21.85584 -21.34840 -19.52308 -18.32389 -16.90654 -16.27990 -15.44934 -14.96934 -14.84178 -14.46897 -14.30132 -13.99111 -13.28873 -13.17097 -13.11609 -12.19631 -11.96386 -11.44624 -11.28609 -11.21181 -11.19713 -10.87020 -10.72617 -10.57954 -10.51233 -10.08315 -9.51922 -9.36507 -8.75460 -8.71487 -8.39342 -7.32915 -6.68052 -4.21169 1.30692 1.68547 2.39890 2.96433 3.04751 3.10578 3.25660 3.78001 4.26479 4.48022 4.76108 4.88899 5.12196 5.18809 5.35105 5.58509 5.64523 5.76827 5.83042 5.89956 6.10472 6.12203 6.29437 6.38193 6.58846 6.60469 6.69884 6.87049 6.89066 7.03025 7.10366 7.24806 7.77425 8.24596 8.81420 10.09836 10.53709 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.028032 B = 0.004620 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.603577 B = 6058.747203 C = 6968.806991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.045 3.955 3 Si 0.952 3.048 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.380 4.380 8 H 0.094 0.906 9 O 0.086 5.914 10 N -0.339 5.339 11 C -0.046 4.046 12 C 0.044 3.956 13 C -0.113 4.113 14 C -0.104 4.104 15 C -0.066 4.066 16 Cl -0.095 7.095 17 C -0.104 4.104 18 C -0.119 4.119 19 C -0.109 4.109 20 C -0.145 4.145 21 C -0.185 4.185 22 H 0.275 0.725 23 H 0.134 0.866 24 H 0.125 0.875 25 H 0.125 0.875 26 H 0.132 0.868 27 H 0.095 0.905 28 H 0.093 0.907 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.586 -10.104 0.413 10.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C -0.163 4.163 3 Si 0.776 3.224 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.190 1.190 7 C -0.459 4.459 8 H 0.112 0.888 9 O 0.003 5.997 10 N -0.039 5.039 11 C -0.210 4.210 12 C 0.043 3.957 13 C -0.133 4.133 14 C -0.122 4.122 15 C -0.093 4.093 16 Cl -0.066 7.066 17 C -0.123 4.123 18 C -0.139 4.139 19 C -0.129 4.129 20 C -0.182 4.182 21 C -0.223 4.223 22 H 0.085 0.915 23 H 0.152 0.848 24 H 0.143 0.857 25 H 0.143 0.857 26 H 0.150 0.850 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.226 -10.000 0.403 10.515 hybrid contribution -0.275 0.530 -0.039 0.599 sum 2.950 -9.469 0.364 9.925 Atomic orbital electron populations 1.70030 1.05960 1.28418 1.43708 1.25372 0.96016 0.99000 0.95895 0.85540 0.78908 0.79043 0.78936 1.19644 1.20070 1.18977 1.21638 0.92265 0.79038 1.52985 0.88825 1.83380 1.34730 1.09724 1.71895 1.70096 1.34107 0.94147 1.05501 1.20746 0.90159 0.88855 1.21213 1.18257 0.91964 0.90975 0.94521 1.21233 0.93325 0.98031 1.00700 1.20868 0.99944 0.90598 1.00820 1.20783 0.91875 0.86743 1.09948 1.98319 1.73590 1.38038 1.96655 1.20798 0.91538 0.98911 1.01002 1.21092 1.00108 0.90565 1.02170 1.20868 0.93190 1.05676 0.93127 1.22714 1.01804 0.91964 1.01754 1.22959 1.02003 0.96439 1.00907 0.91483 0.84800 0.85713 0.85679 0.85029 0.88705 0.88846 0.89133 0.89598 0.89414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.54 13.67 55.48 0.76 -21.79 16 2 C 0.05 1.14 5.49 -17.51 -0.10 1.05 16 3 Si 0.95 19.17 29.55 -169.99 -5.02 14.14 16 4 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.38 -10.04 10.14 30.91 0.31 -9.72 16 8 H 0.09 2.38 7.83 -52.49 -0.41 1.97 16 9 O 0.09 2.28 7.72 15.14 0.12 2.40 16 10 N -0.34 -8.25 9.64 35.09 0.34 -7.91 16 11 C -0.05 -1.00 6.55 -79.77 -0.52 -1.52 16 12 C 0.04 0.83 5.87 -105.03 -0.62 0.21 16 13 C -0.11 -2.00 9.58 -39.16 -0.37 -2.38 16 14 C -0.10 -1.59 9.81 -39.61 -0.39 -1.98 16 15 C -0.07 -0.97 6.33 -39.38 -0.25 -1.22 16 16 Cl -0.09 -1.22 28.95 -51.86 -1.50 -2.72 16 17 C -0.10 -1.49 9.81 -39.61 -0.39 -1.88 16 18 C -0.12 -1.89 9.22 -39.16 -0.36 -2.25 16 19 C -0.11 -2.13 4.67 -91.77 -0.43 -2.56 16 20 C -0.15 -2.88 9.20 -26.69 -0.25 -3.13 16 21 C -0.19 -3.07 8.93 -26.69 -0.24 -3.30 16 22 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 23 H 0.13 2.47 7.55 -52.49 -0.40 2.07 16 24 H 0.12 1.66 8.06 -52.49 -0.42 1.23 16 25 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 26 H 0.13 1.92 6.33 -52.49 -0.33 1.58 16 27 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 28 H 0.09 2.11 7.61 -51.93 -0.40 1.71 16 29 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 292.74 15.07 4.41 4.41 Total: -1.00 -26.72 292.74 -7.70 -34.42 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -3.21 Total: 5.74 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: -3.60 Total: -28.68 kcal Atomic # 7 Polarization: -30.79 SS G_CDS: 1.10 Total: -29.70 kcal Atomic # 8 Polarization: 2.28 SS G_CDS: 0.12 Total: 2.40 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.14 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.50 Total: -2.72 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -26.72 -7.70 -34.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821229286.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.022 kcal (2) G-P(sol) polarization free energy of solvation -26.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds