Wall clock time and date at job start Mon Mar 30 2020 06:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31527 * 1 3 3 Si 1.86799 * 120.00399 * 2 1 4 4 H 1.48497 * 109.47165 * 270.00115 * 3 2 1 5 5 H 1.48504 * 109.46965 * 29.99560 * 3 2 1 6 6 H 1.48495 * 109.47311 * 149.99659 * 3 2 1 7 7 C 1.38711 * 119.99799 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00251 * 180.02562 * 7 2 1 9 9 O 1.34701 * 120.00433 * 0.02562 * 7 2 1 10 10 N 1.21797 * 117.00728 * 180.02562 * 9 7 2 11 11 C 1.29591 * 120.00545 * 180.02562 * 10 9 7 12 12 C 1.47474 * 120.00109 * 174.29100 * 11 10 9 13 13 C 1.39710 * 120.14223 * 359.97438 * 12 11 10 14 14 C 1.37895 * 119.85408 * 180.02562 * 13 12 11 15 15 C 1.38513 * 120.14109 * 0.27700 * 14 13 12 16 16 Cl 1.73595 * 119.85427 * 179.70068 * 15 14 13 17 17 C 1.38520 * 120.28827 * 359.44443 * 15 14 13 18 18 C 1.37884 * 120.14449 * 0.55651 * 17 15 14 19 19 C 1.50704 * 119.99516 * 354.28196 * 11 10 9 20 20 C 1.52996 * 117.50236 * 313.35228 * 19 11 10 21 21 C 1.52996 * 117.49797 * 244.68826 * 19 11 10 22 22 H 0.97001 * 119.99735 * 0.02562 * 1 2 3 23 23 H 1.07995 * 120.07902 * 0.04606 * 13 12 11 24 24 H 1.07998 * 119.92761 * 180.02562 * 14 13 12 25 25 H 1.07995 * 119.92513 * 180.25526 * 17 15 14 26 26 H 1.07993 * 120.07632 * 179.74423 * 18 17 15 27 27 H 1.09001 * 115.54723 * 99.02031 * 19 11 10 28 28 H 1.09000 * 117.49780 * 0.02562 * 20 19 11 29 29 H 1.08999 * 117.50026 * 145.02266 * 20 19 11 30 30 H 1.08999 * 117.49896 * 214.98116 * 21 19 11 31 31 H 1.08996 * 117.50035 * 0.02562 * 21 19 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4468 2.6527 0.7000 6 1 3.5469 1.4401 0.7001 7 6 2.0088 -1.2013 0.0005 8 1 3.0888 -1.2014 0.0010 9 8 1.3353 -2.3679 0.0005 10 7 1.9986 -3.3894 0.0015 11 6 1.4103 -4.5441 0.0011 12 6 2.2080 -5.7781 -0.1248 13 6 3.5981 -5.7057 -0.2443 14 6 4.3381 -6.8633 -0.3622 15 6 3.7056 -8.0955 -0.3681 16 17 4.6438 -9.5477 -0.5247 17 6 2.3282 -8.1744 -0.2442 18 6 1.5766 -7.0245 -0.1257 19 6 -0.0891 -4.6258 0.1294 20 6 -0.7522 -3.7792 1.2177 21 6 -0.6553 -5.2981 1.3817 22 1 -0.4850 0.8401 -0.0004 23 1 4.0921 -4.7454 -0.2440 24 1 5.4128 -6.8087 -0.4542 25 1 1.8415 -9.1385 -0.2454 26 1 0.5025 -7.0871 -0.0333 27 1 -0.6341 -4.7613 -0.8048 28 1 -0.1040 -3.1628 1.8406 29 1 -1.7337 -3.3582 0.9997 30 1 -1.5731 -5.8756 1.2715 31 1 0.0566 -5.6809 2.1129 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821229286.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:52 Heat of formation + Delta-G solvation = 50.558351 kcal Electronic energy + Delta-G solvation = -17034.868748 eV Core-core repulsion = 14116.711897 eV Total energy + Delta-G solvation = -2918.156851 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.061 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.01759 -40.13230 -38.12154 -37.24209 -35.06680 -33.58533 -31.99420 -30.84947 -27.33829 -25.21001 -23.74262 -23.28006 -22.79730 -21.10459 -20.13493 -18.28619 -17.84767 -16.94328 -16.69878 -16.40924 -15.92863 -15.89592 -15.43241 -14.72220 -14.41094 -14.35896 -13.77158 -13.62546 -12.91999 -12.78512 -12.62650 -12.53038 -12.35566 -12.32423 -12.12319 -11.73144 -11.59482 -11.07159 -11.04874 -10.30923 -10.11379 -9.97023 -8.96926 -8.52256 -6.17536 -0.07232 0.41384 1.20232 1.37040 1.39077 1.54296 1.68575 2.13190 2.84436 2.93814 3.02289 3.12055 3.68652 3.96543 4.00393 4.07501 4.17250 4.39505 4.46299 4.55411 4.71662 4.78008 4.85794 5.03588 5.09218 5.12671 5.23225 5.28847 5.30559 5.48311 5.65391 5.87921 5.92739 6.50468 6.95181 8.30030 8.73871 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.028032 B = 0.004620 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.603577 B = 6058.747203 C = 6968.806991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C -0.004 4.004 3 Si 1.022 2.978 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.412 4.412 8 H 0.086 0.914 9 O 0.019 5.981 10 N -0.368 5.368 11 C 0.001 3.999 12 C 0.001 3.999 13 C -0.116 4.116 14 C -0.106 4.106 15 C -0.052 4.052 16 Cl -0.069 7.069 17 C -0.099 4.099 18 C -0.099 4.099 19 C -0.134 4.134 20 C -0.166 4.166 21 C -0.135 4.135 22 H 0.277 0.723 23 H 0.116 0.884 24 H 0.145 0.855 25 H 0.161 0.839 26 H 0.151 0.849 27 H 0.104 0.896 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.128 0.872 31 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.032 -13.836 0.402 14.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.205 4.205 3 Si 0.842 3.158 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.184 1.184 7 C -0.490 4.490 8 H 0.104 0.896 9 O -0.047 6.047 10 N -0.080 5.080 11 C -0.170 4.170 12 C -0.001 4.001 13 C -0.137 4.137 14 C -0.124 4.124 15 C -0.080 4.080 16 Cl -0.041 7.041 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.154 4.154 20 C -0.204 4.204 21 C -0.173 4.173 22 H 0.087 0.913 23 H 0.134 0.866 24 H 0.163 0.837 25 H 0.178 0.822 26 H 0.169 0.831 27 H 0.122 0.878 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.146 0.854 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.653 -13.612 0.392 14.099 hybrid contribution -0.265 0.982 -0.059 1.019 sum 3.388 -12.630 0.333 13.080 Atomic orbital electron populations 1.70137 1.07541 1.29256 1.46644 1.26450 0.96926 1.02003 0.95150 0.84541 0.77645 0.74385 0.79277 1.18781 1.19084 1.18371 1.21867 0.92218 0.80227 1.54725 0.89619 1.83423 1.34479 1.09870 1.76921 1.70033 1.35195 0.94666 1.08070 1.21724 0.91803 0.89225 1.14263 1.18410 0.92361 0.90934 0.98345 1.21222 0.93372 0.98417 1.00655 1.21031 1.00957 0.90082 1.00363 1.21031 0.92561 0.87393 1.06997 1.98344 1.73053 1.36307 1.96346 1.21166 0.91289 0.99814 0.99480 1.21306 1.01187 0.89596 0.99827 1.21034 0.92209 1.07453 0.94661 1.22556 1.01207 0.94276 1.02353 1.23060 1.02937 0.93635 0.97630 0.91325 0.86607 0.83691 0.82156 0.83103 0.87765 0.92707 0.88986 0.85418 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.39 13.67 21.62 0.30 -51.09 16 2 C 0.00 -0.20 5.49 84.85 0.47 0.26 16 3 Si 1.02 41.42 29.55 68.60 2.03 43.44 16 4 H -0.26 -10.16 7.11 99.48 0.71 -9.46 16 5 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 6 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 7 C -0.41 -23.67 10.14 67.93 0.69 -22.98 16 8 H 0.09 4.77 7.83 -2.91 -0.02 4.74 16 9 O 0.02 1.08 7.72 64.09 0.49 1.58 16 10 N -0.37 -19.04 9.64 -42.90 -0.41 -19.45 16 11 C 0.00 0.02 6.55 45.33 0.30 0.32 16 12 C 0.00 0.03 5.87 -20.13 -0.12 -0.09 16 13 C -0.12 -4.02 9.58 22.54 0.22 -3.80 16 14 C -0.11 -2.94 9.81 22.25 0.22 -2.72 16 15 C -0.05 -1.31 6.33 22.40 0.14 -1.17 16 16 Cl -0.07 -1.48 28.95 -2.72 -0.08 -1.56 16 17 C -0.10 -2.33 9.81 22.25 0.22 -2.11 16 18 C -0.10 -2.75 9.22 22.54 0.21 -2.54 16 19 C -0.13 -5.18 4.67 -11.54 -0.05 -5.24 16 20 C -0.17 -6.79 9.20 30.62 0.28 -6.51 16 21 C -0.14 -4.09 8.93 30.62 0.27 -3.82 16 22 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 23 H 0.12 4.40 7.55 -2.91 -0.02 4.38 16 24 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 25 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 26 H 0.15 3.61 6.33 -2.91 -0.02 3.59 16 27 H 0.10 3.88 8.14 -2.39 -0.02 3.87 16 28 H 0.05 2.66 7.61 -2.39 -0.02 2.64 16 29 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 30 H 0.13 2.90 8.14 -2.39 -0.02 2.88 16 31 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -63.83 292.74 6.31 -57.52 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 1.14 Total: 19.94 kcal Atomic # 6 Polarization: -53.23 SS G_CDS: 2.84 Total: -50.39 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -0.12 Total: -70.54 kcal Atomic # 8 Polarization: 1.08 SS G_CDS: 0.49 Total: 1.58 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.56 kcal Total: -63.83 6.31 -57.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821229286.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.083 kcal (2) G-P(sol) polarization free energy of solvation -63.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds