Wall clock time and date at job start Mon Mar 30 2020 06:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00027 * 2 1 4 4 H 1.48498 * 109.47016 * 269.99506 * 3 2 1 5 5 H 1.48500 * 109.47269 * 29.99611 * 3 2 1 6 6 H 1.48504 * 109.47438 * 149.99548 * 3 2 1 7 7 C 1.37879 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00390 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47223 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47208 * 179.97438 * 10 9 7 12 12 N 1.41595 * 114.00192 * 179.97438 * 11 10 9 13 13 C 1.29723 * 119.99855 * 179.97438 * 12 11 10 14 14 C 1.46711 * 119.99580 * 174.31077 * 13 12 11 15 15 C 1.36299 * 125.34016 * 359.97438 * 14 13 12 16 16 C 1.37631 * 114.43792 * 180.26946 * 15 14 13 17 17 C 1.33788 * 115.20496 * 359.53710 * 16 15 14 18 18 S 1.75828 * 109.96400 * 0.44542 * 17 16 15 19 19 C 1.50697 * 120.00291 * 354.31216 * 13 12 11 20 20 C 1.53000 * 117.49715 * 313.20125 * 19 13 12 21 21 C 1.53000 * 117.49936 * 244.54580 * 19 13 12 22 22 H 0.96999 * 120.00431 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47698 * 59.99314 * 9 7 2 24 24 H 1.09008 * 109.46694 * 299.99389 * 9 7 2 25 25 H 1.08992 * 109.47390 * 59.99654 * 10 9 7 26 26 H 1.09002 * 109.46548 * 299.99351 * 10 9 7 27 27 H 1.08002 * 122.78312 * 0.02562 * 15 14 13 28 28 H 1.08001 * 122.39904 * 179.76051 * 16 15 14 29 29 H 1.07993 * 125.02090 * 180.19140 * 17 16 15 30 30 H 1.09004 * 115.55024 * 98.87026 * 19 13 12 31 31 H 1.08998 * 117.49911 * 0.02562 * 20 19 13 32 32 H 1.09005 * 117.49362 * 145.01904 * 20 19 13 33 33 H 1.08998 * 117.50012 * 214.98286 * 21 19 13 34 34 H 1.09005 * 117.49770 * 359.97240 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5309 -4.8996 0.0011 12 7 2.3632 -6.0451 0.0006 13 6 1.8355 -7.2302 0.0016 14 6 2.6921 -8.4146 -0.1249 15 6 4.0492 -8.3964 -0.2497 16 6 4.6277 -9.6404 -0.3588 17 6 3.7754 -10.6708 -0.3161 18 16 2.1285 -10.0808 -0.1402 19 6 0.3428 -7.3903 0.1326 20 6 -0.3613 -6.5819 1.2242 21 6 -0.1850 -8.0939 1.3845 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5572 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 2.8720 -3.6043 0.8904 26 1 2.8719 -3.6043 -0.8896 27 1 4.6227 -7.4813 -0.2658 28 1 5.6938 -9.7754 -0.4673 29 1 4.0570 -11.7112 -0.3842 30 1 -0.1964 -7.5521 -0.8008 31 1 0.2551 -5.9339 1.8473 32 1 -1.3639 -6.2122 1.0090 33 1 -1.0717 -8.7184 1.2748 34 1 0.5474 -8.4414 2.1131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821233812.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:21 Heat of formation + Delta-G solvation = 62.915741 kcal Electronic energy + Delta-G solvation = -16839.266766 eV Core-core repulsion = 14059.522573 eV Total energy + Delta-G solvation = -2779.744193 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.64924 -37.38319 -36.32692 -33.66946 -32.74550 -30.09616 -28.53434 -25.35146 -24.32383 -23.21162 -22.28310 -20.83742 -20.13814 -19.08806 -17.11253 -16.80441 -16.03392 -15.71880 -15.12907 -14.67362 -14.58920 -14.07071 -13.65172 -13.34395 -12.90203 -12.41580 -12.38502 -12.24072 -12.06440 -11.43946 -11.19866 -11.06815 -10.97829 -10.74030 -10.61469 -10.27742 -10.16894 -9.74518 -9.40442 -9.34397 -9.21811 -8.62775 -8.42093 -8.21481 -6.07000 -4.10736 0.46886 1.36352 1.82674 2.16853 2.90615 3.24989 3.30006 3.36183 3.41061 3.77650 4.32278 4.42295 4.87592 4.94949 4.97171 5.14934 5.29472 5.35839 5.46688 5.55630 5.65327 5.90424 5.98939 6.10318 6.20153 6.25411 6.28044 6.30576 6.35039 6.77206 6.78593 7.55310 7.70171 7.82997 8.03288 8.29491 8.94877 9.53112 11.04670 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.033661 B = 0.003698 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.634432 B = 7570.347046 C = 8298.825483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.031 3.969 10 C 0.075 3.925 11 O -0.212 6.212 12 N -0.321 5.321 13 C 0.201 3.799 14 C -0.138 4.138 15 C -0.103 4.103 16 C -0.135 4.135 17 C -0.221 4.221 18 S 0.155 5.845 19 C -0.156 4.156 20 C -0.143 4.143 21 C -0.171 4.171 22 H 0.263 0.737 23 H 0.025 0.975 24 H 0.025 0.975 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.148 0.852 28 H 0.142 0.858 29 H 0.165 0.835 30 H 0.120 0.880 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.751 -22.393 0.628 22.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.008 4.008 10 C -0.001 4.001 11 O -0.232 6.232 12 N -0.062 5.062 13 C 0.011 3.989 14 C -0.257 4.257 15 C -0.137 4.137 16 C -0.165 4.165 17 C -0.359 4.359 18 S 0.418 5.582 19 C -0.176 4.176 20 C -0.180 4.180 21 C -0.210 4.210 22 H 0.072 0.928 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.166 0.834 28 H 0.160 0.840 29 H 0.183 0.817 30 H 0.138 0.862 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.780 -22.413 0.732 22.596 hybrid contribution 1.298 1.502 -0.173 1.993 sum 4.078 -20.911 0.559 21.312 Atomic orbital electron populations 1.69974 1.06087 1.26882 1.50017 1.24986 0.94903 0.99333 0.95000 0.86488 0.79764 0.82937 0.78204 1.20517 1.21090 1.19748 1.21001 0.93124 0.90170 1.51816 0.92335 1.19110 0.94148 0.88992 0.98542 1.23041 0.97187 0.80333 0.99505 1.90017 1.29273 1.11334 1.92584 1.76516 1.24544 0.94712 1.10454 1.21232 0.91150 0.89389 0.97128 1.22518 0.95770 0.94972 1.12421 1.20793 0.92836 0.99295 1.00760 1.20052 1.01216 0.91446 1.03804 1.25895 0.96289 1.03310 1.10368 1.84128 1.07089 0.96507 1.70445 1.21402 0.91938 1.08584 0.95641 1.22902 1.01939 0.93096 1.00060 1.23023 1.02915 0.96271 0.98743 0.92781 0.95632 0.95622 0.93806 0.93733 0.83405 0.84041 0.81701 0.86203 0.88166 0.87992 0.88208 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 9 C 0.03 0.83 5.34 -27.88 -0.15 0.68 16 10 C 0.08 1.74 6.34 37.16 0.24 1.98 16 11 O -0.21 -4.58 9.12 -11.47 -0.10 -4.69 16 12 N -0.32 -6.08 10.99 34.94 0.38 -5.69 16 13 C 0.20 3.18 6.58 -80.06 -0.53 2.65 16 14 C -0.14 -1.83 6.40 -36.86 -0.24 -2.07 16 15 C -0.10 -1.26 9.89 -40.50 -0.40 -1.67 16 16 C -0.13 -1.30 10.15 -41.36 -0.42 -1.72 16 17 C -0.22 -1.91 11.22 29.17 0.33 -1.58 16 18 S 0.15 1.52 22.39 -107.50 -2.41 -0.89 16 19 C -0.16 -2.18 5.16 -91.77 -0.47 -2.66 16 20 C -0.14 -2.06 9.08 -26.70 -0.24 -2.31 16 21 C -0.17 -1.96 9.81 -26.70 -0.26 -2.23 16 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.03 0.72 8.14 -51.92 -0.42 0.30 16 25 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.15 1.89 8.00 -52.49 -0.42 1.47 16 28 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 29 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 30 H 0.12 1.58 8.14 -51.93 -0.42 1.16 16 31 H 0.10 1.68 7.60 -51.93 -0.39 1.28 16 32 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 314.09 15.07 4.73 4.73 Total: -1.00 -31.14 314.09 -8.82 -39.96 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -4.58 Total: -1.41 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -2.56 Total: -22.57 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 1.12 Total: -31.77 kcal Atomic # 8 Polarization: -4.58 SS G_CDS: -0.10 Total: -4.69 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.41 Total: -0.89 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.14 -8.82 -39.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821233812.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.877 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds