Wall clock time and date at job start Mon Mar 30 2020 06:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86802 * 120.00027 * 2 1 4 4 H 1.48498 * 109.47016 * 269.99506 * 3 2 1 5 5 H 1.48500 * 109.47269 * 29.99611 * 3 2 1 6 6 H 1.48504 * 109.47438 * 149.99548 * 3 2 1 7 7 C 1.37879 * 120.00177 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00390 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47223 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47208 * 179.97438 * 10 9 7 12 12 N 1.41595 * 114.00192 * 179.97438 * 11 10 9 13 13 C 1.29723 * 119.99855 * 179.97438 * 12 11 10 14 14 C 1.46711 * 119.99580 * 174.31077 * 13 12 11 15 15 C 1.36299 * 125.34016 * 359.97438 * 14 13 12 16 16 C 1.37631 * 114.43792 * 180.26946 * 15 14 13 17 17 C 1.33788 * 115.20496 * 359.53710 * 16 15 14 18 18 S 1.75828 * 109.96400 * 0.44542 * 17 16 15 19 19 C 1.50697 * 120.00291 * 354.31216 * 13 12 11 20 20 C 1.53000 * 117.49715 * 313.20125 * 19 13 12 21 21 C 1.53000 * 117.49936 * 244.54580 * 19 13 12 22 22 H 0.96999 * 120.00431 * 0.02562 * 1 2 3 23 23 H 1.08996 * 109.47698 * 59.99314 * 9 7 2 24 24 H 1.09008 * 109.46694 * 299.99389 * 9 7 2 25 25 H 1.08992 * 109.47390 * 59.99654 * 10 9 7 26 26 H 1.09002 * 109.46548 * 299.99351 * 10 9 7 27 27 H 1.08002 * 122.78312 * 0.02562 * 15 14 13 28 28 H 1.08001 * 122.39904 * 179.76051 * 16 15 14 29 29 H 1.07993 * 125.02090 * 180.19140 * 17 16 15 30 30 H 1.09004 * 115.55024 * 98.87026 * 19 13 12 31 31 H 1.08998 * 117.49911 * 0.02562 * 20 19 13 32 32 H 1.09005 * 117.49362 * 145.01904 * 20 19 13 33 33 H 1.08998 * 117.50012 * 214.98286 * 21 19 13 34 34 H 1.09005 * 117.49770 * 359.97240 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5309 -4.8996 0.0011 12 7 2.3632 -6.0451 0.0006 13 6 1.8355 -7.2302 0.0016 14 6 2.6921 -8.4146 -0.1249 15 6 4.0492 -8.3964 -0.2497 16 6 4.6277 -9.6404 -0.3588 17 6 3.7754 -10.6708 -0.3161 18 16 2.1285 -10.0808 -0.1402 19 6 0.3428 -7.3903 0.1326 20 6 -0.3613 -6.5819 1.2242 21 6 -0.1850 -8.0939 1.3845 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5572 -0.8896 24 1 0.6241 -2.5567 0.8904 25 1 2.8720 -3.6043 0.8904 26 1 2.8719 -3.6043 -0.8896 27 1 4.6227 -7.4813 -0.2658 28 1 5.6938 -9.7754 -0.4673 29 1 4.0570 -11.7112 -0.3842 30 1 -0.1964 -7.5521 -0.8008 31 1 0.2551 -5.9339 1.8473 32 1 -1.3639 -6.2122 1.0090 33 1 -1.0717 -8.7184 1.2748 34 1 0.5474 -8.4414 2.1131 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821233812.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:21 Heat of formation + Delta-G solvation = 45.576064 kcal Electronic energy + Delta-G solvation = -16840.018671 eV Core-core repulsion = 14059.522573 eV Total energy + Delta-G solvation = -2780.496098 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.79659 -38.38196 -37.79086 -35.53153 -34.31486 -31.91683 -29.75895 -26.81931 -25.97844 -24.19674 -23.35017 -22.84494 -21.26160 -20.04860 -18.66956 -18.09066 -17.63394 -16.70137 -16.63493 -16.45210 -16.15178 -15.52734 -14.74132 -14.38605 -14.29233 -13.85410 -13.73448 -13.55169 -13.26220 -13.02971 -12.83432 -12.54799 -12.49879 -12.30346 -11.82368 -11.76383 -11.51066 -11.47066 -11.33665 -10.82385 -10.76087 -10.59480 -9.40225 -9.36185 -8.27943 -6.41504 -0.48229 0.48824 1.03551 1.13814 1.39150 1.41956 1.53032 1.79615 1.96272 2.39459 2.69303 3.05987 3.20169 3.80480 3.92679 4.09246 4.22194 4.33687 4.35213 4.46816 4.49204 4.67708 4.69349 4.76872 4.87943 5.01223 5.11729 5.13035 5.15288 5.37006 5.43896 5.47338 5.49026 5.73411 6.08356 6.45955 6.71939 7.28076 8.85170 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.033661 B = 0.003698 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.634432 B = 7570.347046 C = 8298.825483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.977 3.023 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.066 0.934 9 C 0.039 3.961 10 C 0.098 3.902 11 O -0.239 6.239 12 N -0.362 5.362 13 C 0.223 3.777 14 C -0.191 4.191 15 C -0.097 4.097 16 C -0.151 4.151 17 C -0.194 4.194 18 S 0.195 5.805 19 C -0.173 4.173 20 C -0.168 4.168 21 C -0.131 4.131 22 H 0.268 0.732 23 H -0.002 1.002 24 H -0.001 1.001 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.133 0.867 28 H 0.167 0.833 29 H 0.204 0.796 30 H 0.131 0.869 31 H 0.068 0.932 32 H 0.105 0.895 33 H 0.133 0.867 34 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.889 -25.010 0.576 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.800 3.200 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.586 4.586 8 H 0.084 0.916 9 C 0.000 4.000 10 C 0.022 3.978 11 O -0.255 6.255 12 N -0.108 5.108 13 C 0.034 3.966 14 C -0.309 4.309 15 C -0.133 4.133 16 C -0.180 4.180 17 C -0.332 4.332 18 S 0.460 5.540 19 C -0.193 4.193 20 C -0.205 4.205 21 C -0.168 4.168 22 H 0.076 0.924 23 H 0.016 0.984 24 H 0.017 0.983 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.151 0.849 28 H 0.184 0.816 29 H 0.221 0.779 30 H 0.149 0.851 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.152 0.848 34 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.896 -25.026 0.682 25.336 hybrid contribution 0.947 1.970 -0.166 2.192 sum 4.843 -23.055 0.515 23.564 Atomic orbital electron populations 1.70110 1.07957 1.28261 1.50531 1.26028 0.95868 1.03579 0.94038 0.85276 0.78528 0.77474 0.78727 1.19445 1.20328 1.18554 1.21390 0.93691 0.91153 1.52325 0.91608 1.18902 0.94269 0.90975 0.95837 1.22473 0.95583 0.80515 0.99274 1.89916 1.30033 1.11936 1.93612 1.76611 1.23708 0.94562 1.15890 1.21904 0.92742 0.89361 0.92566 1.22609 0.96184 0.95931 1.16202 1.20983 0.92737 1.00228 0.99363 1.20229 1.02770 0.90337 1.04712 1.26455 0.95293 1.04851 1.06561 1.83946 1.07568 0.93229 1.69271 1.21552 0.90975 1.09792 0.96947 1.22828 1.01663 0.95176 1.00853 1.23141 1.03514 0.93963 0.96218 0.92364 0.98387 0.98257 0.93916 0.93834 0.84944 0.81590 0.77931 0.85144 0.91334 0.87707 0.84844 0.88125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 2 C 0.00 0.21 5.46 84.66 0.46 0.67 16 3 Si 0.98 44.77 29.54 68.60 2.03 46.80 16 4 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.55 -32.43 9.11 25.60 0.23 -32.20 16 8 H 0.07 3.71 7.74 -2.91 -0.02 3.68 16 9 C 0.04 2.23 5.34 29.85 0.16 2.39 16 10 C 0.10 4.83 6.34 71.98 0.46 5.28 16 11 O -0.24 -11.11 9.12 -38.77 -0.35 -11.46 16 12 N -0.36 -14.44 10.99 -43.38 -0.48 -14.92 16 13 C 0.22 7.19 6.58 45.08 0.30 7.49 16 14 C -0.19 -4.86 6.40 24.03 0.15 -4.70 16 15 C -0.10 -2.30 9.89 21.67 0.21 -2.09 16 16 C -0.15 -2.45 10.15 21.11 0.21 -2.24 16 17 C -0.19 -2.47 11.22 66.81 0.75 -1.72 16 18 S 0.20 3.20 22.39 -56.49 -1.26 1.93 16 19 C -0.17 -4.83 5.16 -11.54 -0.06 -4.89 16 20 C -0.17 -5.03 9.08 30.62 0.28 -4.75 16 21 C -0.13 -2.76 9.81 30.62 0.30 -2.46 16 22 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 23 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 24 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 25 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.13 3.47 8.00 -2.91 -0.02 3.44 16 28 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 29 H 0.20 1.08 8.06 -2.91 -0.02 1.05 16 30 H 0.13 3.37 8.14 -2.39 -0.02 3.35 16 31 H 0.07 2.49 7.60 -2.39 -0.02 2.47 16 32 H 0.10 3.00 8.14 -2.38 -0.02 2.98 16 33 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 Total: -1.00 -71.16 314.09 4.76 -66.40 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 1.08 Total: 7.78 kcal Atomic # 6 Polarization: -42.68 SS G_CDS: 3.46 Total: -39.22 kcal Atomic # 7 Polarization: -72.03 SS G_CDS: -0.19 Total: -72.22 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -0.35 Total: -11.46 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -1.26 Total: 1.93 kcal Total: -71.16 4.76 -66.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821233812.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.976 kcal (2) G-P(sol) polarization free energy of solvation -71.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds