Wall clock time and date at job start Mon Mar 30 2020 06:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86800 * 120.00178 * 2 1 4 4 H 1.48496 * 109.47237 * 270.00006 * 3 2 1 5 5 H 1.48503 * 109.47013 * 29.99906 * 3 2 1 6 6 H 1.48497 * 109.47431 * 149.99574 * 3 2 1 7 7 C 1.38651 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00187 * 180.02562 * 7 2 1 9 9 O 1.34832 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.35754 * 117.00013 * 185.41192 * 9 7 2 11 11 C 1.38947 * 120.03509 * 5.91222 * 10 9 7 12 12 C 1.38125 * 120.07233 * 179.97438 * 11 10 9 13 13 C 1.38192 * 120.13991 * 0.04660 * 12 11 10 14 14 C 1.38919 * 120.06612 * 359.97438 * 13 12 11 15 15 N 1.39931 * 120.03860 * 179.97438 * 14 13 12 16 16 C 1.34776 * 120.00287 * 146.42615 * 15 14 13 17 17 O 1.21292 * 119.99833 * 354.79541 * 16 15 14 18 18 C 1.50692 * 120.00102 * 174.79236 * 16 15 14 19 19 F 1.39899 * 115.54924 * 335.58418 * 18 16 15 20 20 C 1.53001 * 117.51901 * 121.28425 * 18 16 15 21 21 C 1.52999 * 60.00059 * 107.48393 * 20 18 16 22 22 C 1.38735 * 120.03291 * 186.25390 * 10 9 7 23 23 H 0.97001 * 120.00324 * 0.02562 * 1 2 3 24 24 H 1.08007 * 119.96464 * 0.02562 * 11 10 9 25 25 H 1.08003 * 119.92584 * 180.02562 * 12 11 10 26 26 H 1.08005 * 119.97057 * 179.97438 * 13 12 11 27 27 H 0.96997 * 119.99827 * 326.42856 * 15 14 13 28 28 H 1.08996 * 117.49993 * 214.97211 * 20 18 16 29 29 H 1.08997 * 117.49892 * 359.97438 * 20 18 16 30 30 H 1.09007 * 117.49684 * 252.51525 * 21 20 18 31 31 H 1.09005 * 117.52218 * 107.48422 * 21 20 18 32 32 H 1.08002 * 120.06806 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4470 2.6527 0.7000 6 1 3.5470 1.4402 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3346 -2.3684 0.0016 10 6 2.0694 -3.5042 0.1161 11 6 3.4371 -3.4272 0.3486 12 6 4.1854 -4.5823 0.4658 13 6 3.5769 -5.8177 0.3514 14 6 2.2099 -5.9015 0.1186 15 7 1.5945 -7.1528 0.0024 16 6 0.3320 -7.3263 0.4411 17 8 -0.2373 -6.4262 1.0215 18 6 -0.3721 -8.6384 0.2106 19 9 0.0963 -9.3928 -0.8704 20 6 -0.8685 -9.4001 1.4413 21 6 -1.8694 -8.7006 0.5194 22 6 1.4566 -4.7429 -0.0058 23 1 -0.4851 0.8400 -0.0004 24 1 3.9156 -2.4630 0.4385 25 1 5.2482 -4.5197 0.6469 26 1 4.1647 -6.7192 0.4431 27 1 2.0765 -7.8953 -0.3940 28 1 -0.8301 -10.4889 1.4086 29 1 -0.6854 -8.9523 2.4180 30 1 -2.3450 -7.7923 0.8896 31 1 -2.4896 -9.3289 -0.1200 32 1 0.3945 -4.8052 -0.1916 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843531554.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:38 Heat of formation + Delta-G solvation = -49.558609 kcal Electronic energy + Delta-G solvation = -19160.872885 eV Core-core repulsion = 15810.038262 eV Total energy + Delta-G solvation = -3350.834623 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.090 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -48.02134 -40.27959 -38.74120 -36.92342 -35.75159 -34.14119 -32.25986 -29.63613 -28.64701 -25.45116 -24.74967 -22.96344 -22.09177 -21.29094 -20.05569 -18.41835 -18.14622 -17.10977 -16.29676 -15.61535 -15.21359 -15.17069 -15.06393 -14.60432 -14.21372 -13.91836 -13.74089 -13.55600 -13.37827 -12.83172 -12.54890 -11.93905 -11.76932 -11.56882 -11.41790 -11.19072 -10.99087 -10.81255 -10.46420 -10.37369 -9.96997 -9.77147 -9.28755 -8.82390 -7.74944 -7.21885 -6.42953 -4.02386 1.79530 2.30490 2.51592 2.85954 3.14303 3.15027 3.20008 3.39315 3.77225 3.97712 4.27638 4.40464 4.50038 4.58502 5.12166 5.22729 5.27697 5.50327 5.54290 5.59824 5.75464 5.79523 6.06325 6.16677 6.32776 6.60590 6.80460 6.98628 7.04918 7.31867 7.43716 7.56055 7.72882 8.01291 8.13986 9.01778 9.72282 10.74875 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.030165 B = 0.004461 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.994685 B = 6274.913046 C = 6984.348117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.168 3.832 11 C -0.242 4.242 12 C -0.057 4.057 13 C -0.233 4.233 14 C 0.174 3.826 15 N -0.658 5.658 16 C 0.534 3.466 17 O -0.492 6.492 18 C 0.003 3.997 19 F -0.168 7.168 20 C -0.158 4.158 21 C -0.150 4.150 22 C -0.188 4.188 23 H 0.270 0.730 24 H 0.129 0.871 25 H 0.113 0.887 26 H 0.110 0.890 27 H 0.410 0.590 28 H 0.116 0.884 29 H 0.117 0.883 30 H 0.126 0.874 31 H 0.116 0.884 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.080 -16.232 0.775 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.076 6.076 10 C 0.113 3.887 11 C -0.262 4.262 12 C -0.076 4.076 13 C -0.254 4.254 14 C 0.082 3.918 15 N -0.303 5.303 16 C 0.318 3.682 17 O -0.365 6.365 18 C -0.019 4.019 19 F -0.148 7.148 20 C -0.196 4.196 21 C -0.187 4.187 22 C -0.209 4.209 23 H 0.080 0.920 24 H 0.147 0.853 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.246 0.754 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.144 0.856 31 H 0.134 0.866 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.202 -15.392 1.126 15.479 hybrid contribution 0.883 0.239 -0.373 0.988 sum 2.085 -15.153 0.753 15.314 Atomic orbital electron populations 1.70049 1.05992 1.27700 1.45687 1.25309 0.95841 0.98863 0.96509 0.85700 0.78903 0.80035 0.78702 1.19869 1.20254 1.19164 1.21348 0.91822 0.80779 1.52938 0.88971 1.84007 1.34164 1.11381 1.78006 1.19096 0.90104 0.87681 0.91823 1.21203 0.94217 0.99093 1.11668 1.20516 0.98451 0.91583 0.97069 1.20264 0.92790 0.97686 1.14692 1.17160 0.91616 0.83129 0.99921 1.43251 1.14264 1.12138 1.60602 1.19467 0.81985 0.87334 0.79389 1.90852 1.65208 1.40917 1.39517 1.21181 0.98884 0.92096 0.89750 1.92865 1.89608 1.76704 1.55621 1.23695 1.00846 1.00515 0.94505 1.23692 0.89224 1.04356 1.01450 1.19996 1.00697 0.88849 1.11379 0.91979 0.85316 0.86874 0.87230 0.75396 0.86591 0.86426 0.85591 0.86616 0.85389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.71 13.67 55.48 0.76 -24.95 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.69 29.55 -169.99 -5.02 15.66 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 7 C -0.39 -11.16 9.44 30.88 0.29 -10.87 16 8 H 0.09 2.40 5.29 -52.49 -0.28 2.12 16 9 O -0.17 -5.11 9.76 0.03 0.00 -5.11 16 10 C 0.17 4.24 6.64 -39.14 -0.26 3.98 16 11 C -0.24 -5.33 9.13 -39.36 -0.36 -5.69 16 12 C -0.06 -1.05 10.03 -39.64 -0.40 -1.44 16 13 C -0.23 -4.04 9.96 -39.35 -0.39 -4.44 16 14 C 0.17 3.33 6.27 -83.72 -0.52 2.81 16 15 N -0.66 -10.18 5.31 -9.88 -0.05 -10.23 16 16 C 0.53 8.54 7.30 -10.99 -0.08 8.46 16 17 O -0.49 -9.82 14.03 5.55 0.08 -9.74 16 18 C 0.00 0.03 3.71 -91.77 -0.34 -0.31 16 19 F -0.17 -2.01 17.12 2.25 0.04 -1.97 16 20 C -0.16 -1.42 10.22 -26.73 -0.27 -1.69 16 21 C -0.15 -1.49 10.03 -26.73 -0.27 -1.76 16 22 C -0.19 -4.36 8.60 -39.21 -0.34 -4.70 16 23 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.13 2.80 5.71 -52.48 -0.30 2.50 16 25 H 0.11 1.68 8.06 -52.48 -0.42 1.26 16 26 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 27 H 0.41 4.92 8.48 -40.82 -0.35 4.57 16 28 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.13 1.39 7.71 -51.93 -0.40 0.99 16 31 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.13 3.15 6.45 -52.49 -0.34 2.81 16 LS Contribution 290.08 15.07 4.37 4.37 Total: -1.00 -33.18 290.08 -5.78 -38.95 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -2.91 Total: 7.66 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -3.04 Total: -14.65 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.71 Total: -35.18 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.08 Total: -14.85 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.04 Total: -1.97 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -33.18 -5.78 -38.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843531554.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.605 kcal (2) G-P(sol) polarization free energy of solvation -33.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds