Wall clock time and date at job start Mon Mar 30 2020 06:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86800 * 120.00178 * 2 1 4 4 H 1.48496 * 109.47237 * 270.00006 * 3 2 1 5 5 H 1.48503 * 109.47013 * 29.99906 * 3 2 1 6 6 H 1.48497 * 109.47431 * 149.99574 * 3 2 1 7 7 C 1.38651 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00187 * 180.02562 * 7 2 1 9 9 O 1.34832 * 119.99905 * 359.97438 * 7 2 1 10 10 C 1.35754 * 117.00013 * 185.41192 * 9 7 2 11 11 C 1.38947 * 120.03509 * 5.91222 * 10 9 7 12 12 C 1.38125 * 120.07233 * 179.97438 * 11 10 9 13 13 C 1.38192 * 120.13991 * 0.04660 * 12 11 10 14 14 C 1.38919 * 120.06612 * 359.97438 * 13 12 11 15 15 N 1.39931 * 120.03860 * 179.97438 * 14 13 12 16 16 C 1.34776 * 120.00287 * 146.42615 * 15 14 13 17 17 O 1.21292 * 119.99833 * 354.79541 * 16 15 14 18 18 C 1.50692 * 120.00102 * 174.79236 * 16 15 14 19 19 F 1.39899 * 115.54924 * 335.58418 * 18 16 15 20 20 C 1.53001 * 117.51901 * 121.28425 * 18 16 15 21 21 C 1.52999 * 60.00059 * 107.48393 * 20 18 16 22 22 C 1.38735 * 120.03291 * 186.25390 * 10 9 7 23 23 H 0.97001 * 120.00324 * 0.02562 * 1 2 3 24 24 H 1.08007 * 119.96464 * 0.02562 * 11 10 9 25 25 H 1.08003 * 119.92584 * 180.02562 * 12 11 10 26 26 H 1.08005 * 119.97057 * 179.97438 * 13 12 11 27 27 H 0.96997 * 119.99827 * 326.42856 * 15 14 13 28 28 H 1.08996 * 117.49993 * 214.97211 * 20 18 16 29 29 H 1.08997 * 117.49892 * 359.97438 * 20 18 16 30 30 H 1.09007 * 117.49684 * 252.51525 * 21 20 18 31 31 H 1.09005 * 117.52218 * 107.48422 * 21 20 18 32 32 H 1.08002 * 120.06806 * 359.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0464 -1.4000 5 1 1.4470 2.6527 0.7000 6 1 3.5470 1.4402 0.7001 7 6 2.0088 -1.2007 0.0005 8 1 3.0888 -1.2007 0.0010 9 8 1.3346 -2.3684 0.0016 10 6 2.0694 -3.5042 0.1161 11 6 3.4371 -3.4272 0.3486 12 6 4.1854 -4.5823 0.4658 13 6 3.5769 -5.8177 0.3514 14 6 2.2099 -5.9015 0.1186 15 7 1.5945 -7.1528 0.0024 16 6 0.3320 -7.3263 0.4411 17 8 -0.2373 -6.4262 1.0215 18 6 -0.3721 -8.6384 0.2106 19 9 0.0963 -9.3928 -0.8704 20 6 -0.8685 -9.4001 1.4413 21 6 -1.8694 -8.7006 0.5194 22 6 1.4566 -4.7429 -0.0058 23 1 -0.4851 0.8400 -0.0004 24 1 3.9156 -2.4630 0.4385 25 1 5.2482 -4.5197 0.6469 26 1 4.1647 -6.7192 0.4431 27 1 2.0765 -7.8953 -0.3940 28 1 -0.8301 -10.4889 1.4086 29 1 -0.6854 -8.9523 2.4180 30 1 -2.3450 -7.7923 0.8896 31 1 -2.4896 -9.3289 -0.1200 32 1 0.3945 -4.8052 -0.1916 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843531554.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:38 Heat of formation + Delta-G solvation = -72.623237 kcal Electronic energy + Delta-G solvation = -19161.873043 eV Core-core repulsion = 15810.038262 eV Total energy + Delta-G solvation = -3351.834781 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.090 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.95288 -41.70020 -40.45350 -38.50207 -36.84067 -35.63782 -34.28299 -31.31831 -30.27897 -27.40689 -26.09073 -23.72804 -23.63836 -22.93848 -21.32987 -20.06000 -19.53008 -18.87344 -17.53400 -16.92691 -16.77725 -16.55857 -16.40990 -15.95865 -15.82245 -15.55091 -15.39826 -14.67496 -14.51830 -14.39616 -14.20215 -13.61099 -13.28236 -13.01312 -12.68609 -12.62364 -12.43256 -12.28438 -12.12718 -11.47408 -11.42096 -11.25664 -10.93602 -10.77832 -9.41848 -8.94383 -8.47874 -6.17880 0.26772 0.65123 1.18826 1.34852 1.45731 1.53713 1.65728 2.17644 2.44964 2.80089 2.81583 3.13625 3.18714 3.48564 3.61912 3.70136 4.08475 4.32492 4.36656 4.54829 4.60074 4.65231 4.71140 4.78752 4.96670 5.00595 5.08954 5.32046 5.35179 5.58900 5.69407 6.00404 6.11645 6.22840 6.87072 6.95689 7.76734 8.75914 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.030165 B = 0.004461 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.994685 B = 6274.913046 C = 6984.348117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.026 4.026 3 Si 1.024 2.976 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.248 1.248 7 C -0.415 4.415 8 H 0.107 0.893 9 O -0.234 6.234 10 C 0.128 3.872 11 C -0.251 4.251 12 C -0.046 4.046 13 C -0.203 4.203 14 C 0.180 3.820 15 N -0.648 5.648 16 C 0.528 3.472 17 O -0.541 6.541 18 C -0.014 4.014 19 F -0.165 7.165 20 C -0.127 4.127 21 C -0.148 4.148 22 C -0.214 4.214 23 H 0.273 0.727 24 H 0.126 0.874 25 H 0.163 0.837 26 H 0.164 0.836 27 H 0.430 0.570 28 H 0.151 0.849 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.143 0.857 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.957 -18.960 1.137 19.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.223 4.223 3 Si 0.843 3.157 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.172 1.172 7 C -0.491 4.491 8 H 0.125 0.875 9 O -0.140 6.140 10 C 0.077 3.923 11 C -0.270 4.270 12 C -0.064 4.064 13 C -0.223 4.223 14 C 0.086 3.914 15 N -0.294 5.294 16 C 0.315 3.685 17 O -0.417 6.417 18 C -0.036 4.036 19 F -0.145 7.145 20 C -0.165 4.165 21 C -0.186 4.186 22 C -0.235 4.235 23 H 0.082 0.918 24 H 0.144 0.856 25 H 0.181 0.819 26 H 0.182 0.818 27 H 0.270 0.730 28 H 0.169 0.831 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.161 0.839 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.127 -18.222 1.472 18.741 hybrid contribution 0.071 0.709 -0.476 0.857 sum 4.198 -17.513 0.995 18.036 Atomic orbital electron populations 1.70218 1.08312 1.28874 1.48771 1.26718 0.96859 1.03032 0.95692 0.84518 0.77836 0.74053 0.79328 1.18678 1.19731 1.17173 1.21920 0.92727 0.81196 1.53281 0.87526 1.83970 1.36138 1.12738 1.81184 1.19628 0.91812 0.87229 0.93625 1.21364 0.92951 1.00827 1.11901 1.21065 1.00534 0.90225 0.94580 1.20898 0.91838 0.99503 1.10055 1.17323 0.92475 0.83261 0.98344 1.43221 1.14479 1.11350 1.60362 1.20240 0.81749 0.88376 0.78128 1.90844 1.66186 1.43001 1.41679 1.20979 0.99732 0.91017 0.91871 1.92872 1.89708 1.76225 1.55692 1.23880 0.97636 1.02060 0.92884 1.23831 0.88289 1.04371 1.02113 1.20016 0.99832 0.90200 1.13478 0.91831 0.85594 0.81917 0.81845 0.72984 0.83123 0.86589 0.87442 0.83947 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.94 13.67 21.61 0.30 -58.65 16 2 C -0.03 -1.52 5.49 84.83 0.47 -1.05 16 3 Si 1.02 43.62 29.55 68.60 2.03 45.65 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 6 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 7 C -0.42 -24.96 9.44 67.92 0.64 -24.32 16 8 H 0.11 5.76 5.29 -2.91 -0.02 5.74 16 9 O -0.23 -14.96 9.76 -22.80 -0.22 -15.19 16 10 C 0.13 6.84 6.64 22.56 0.15 6.99 16 11 C -0.25 -11.01 9.13 22.41 0.20 -10.80 16 12 C -0.05 -1.49 10.03 22.23 0.22 -1.27 16 13 C -0.20 -6.13 9.96 22.42 0.22 -5.91 16 14 C 0.18 6.65 6.27 38.14 0.24 6.89 16 15 N -0.65 -18.98 5.31 -303.56 -1.61 -20.59 16 16 C 0.53 16.79 7.30 87.65 0.64 17.43 16 17 O -0.54 -22.64 14.03 -3.07 -0.04 -22.68 16 18 C -0.01 -0.32 3.71 -11.54 -0.04 -0.36 16 19 F -0.16 -3.52 17.12 44.97 0.77 -2.75 16 20 C -0.13 -1.90 10.22 30.59 0.31 -1.59 16 21 C -0.15 -2.73 10.03 30.59 0.31 -2.42 16 22 C -0.21 -10.42 8.60 22.51 0.19 -10.23 16 23 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 24 H 0.13 5.51 5.71 -2.91 -0.02 5.49 16 25 H 0.16 3.80 8.06 -2.91 -0.02 3.77 16 26 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 27 H 0.43 8.92 8.48 -92.71 -0.79 8.14 16 28 H 0.15 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.11 2.41 7.71 -2.38 -0.02 2.39 16 31 H 0.14 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.10 5.23 6.45 -2.91 -0.02 5.21 16 Total: -1.00 -81.27 290.08 5.16 -76.10 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.39 Total: 24.74 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 3.56 Total: -26.64 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -1.32 Total: -79.24 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.27 Total: -37.86 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.77 Total: -2.75 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -81.27 5.16 -76.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843531554.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.481 kcal (2) G-P(sol) polarization free energy of solvation -81.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds