Wall clock time and date at job start Mon Mar 30 2020 06:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47596 * 2 1 4 4 C 1.50703 * 109.47235 * 239.99842 * 2 1 3 5 5 H 1.07993 * 120.00368 * 274.77689 * 4 2 1 6 6 C 1.37881 * 119.99720 * 94.77700 * 4 2 1 7 7 N 1.31518 * 119.99848 * 184.19923 * 6 4 2 8 8 Si 1.86801 * 120.00065 * 4.19902 * 6 4 2 9 9 H 1.48497 * 109.47206 * 94.05993 * 8 6 4 10 10 H 1.48504 * 109.47000 * 214.05983 * 8 6 4 11 11 H 1.48499 * 109.47166 * 334.06013 * 8 6 4 12 12 C 1.50695 * 109.47249 * 120.00116 * 2 1 3 13 13 O 1.20834 * 120.00433 * 119.99673 * 12 2 1 14 14 O 1.34264 * 120.00156 * 300.00414 * 12 2 1 15 15 C 1.35923 * 117.00259 * 185.82598 * 14 12 2 16 16 C 1.38758 * 120.05293 * 248.97611 * 15 14 12 17 17 C 1.38115 * 119.94521 * 179.79016 * 16 15 14 18 18 C 1.38296 * 120.05608 * 0.48445 * 17 16 15 19 19 C 1.38244 * 120.10694 * 359.74389 * 18 17 16 20 20 N 1.48013 * 119.96663 * 179.97438 * 19 18 17 21 21 O 1.21805 * 119.99541 * 180.02562 * 20 19 18 22 22 O 1.21798 * 120.00563 * 0.03086 * 20 19 18 23 23 C 1.38167 * 120.05845 * 0.02903 * 19 18 17 24 24 H 1.09008 * 109.46767 * 55.14145 * 1 2 3 25 25 H 1.08996 * 109.47047 * 295.14378 * 1 2 3 26 26 H 1.09001 * 109.47112 * 175.13937 * 1 2 3 27 27 H 0.96999 * 119.99978 * 179.97438 * 7 6 4 28 28 H 1.08006 * 120.02374 * 0.02562 * 16 15 14 29 29 H 1.07999 * 119.97341 * 180.20943 * 17 16 15 30 30 H 1.07998 * 119.94482 * 179.76658 * 18 17 16 31 31 H 1.07997 * 120.02651 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1389 -1.7851 -1.2279 6 6 2.3559 0.0117 -2.3596 7 7 2.7152 -0.6136 -3.4595 8 14 2.2839 1.8780 -2.3272 9 1 3.6280 2.4197 -2.0027 10 1 1.8559 2.3800 -3.6576 11 1 1.3107 2.3180 -1.2955 12 6 2.0323 -0.7104 1.2304 13 8 2.7270 -1.6929 1.1196 14 8 1.7079 -0.2518 2.4499 15 6 2.2910 -0.8635 3.5145 16 6 1.5272 -1.6406 4.3736 17 6 2.1228 -2.2646 5.4522 18 6 3.4774 -2.1074 5.6821 19 6 4.2397 -1.3299 4.8303 20 7 5.6891 -1.1632 5.0796 21 8 6.3612 -0.4779 4.3297 22 8 6.2099 -1.7115 6.0344 23 6 3.6495 -0.7073 3.7472 24 1 -0.3633 0.5874 -0.8433 25 1 -0.3633 0.4366 0.9303 26 1 -0.3633 -1.0240 -0.0871 27 1 2.9425 -0.1056 -4.2539 28 1 0.4685 -1.7604 4.1967 29 1 1.5294 -2.8723 6.1192 30 1 3.9406 -2.5931 6.5282 31 1 4.2454 -0.0996 3.0824 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850742961.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:39 Heat of formation + Delta-G solvation = -54.705411 kcal Electronic energy + Delta-G solvation = -19447.012881 eV Core-core repulsion = 16083.582286 eV Total energy + Delta-G solvation = -3363.430595 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.083 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.25014 -41.09967 -38.88191 -36.62954 -36.48857 -34.05346 -32.17807 -31.67793 -30.63414 -26.72378 -25.49335 -24.71492 -22.88263 -22.25330 -20.41481 -19.21995 -18.70165 -17.57753 -17.55520 -16.87647 -16.69448 -16.46140 -16.16832 -14.75004 -14.44796 -14.33043 -13.53726 -13.16231 -12.82137 -12.59957 -12.54012 -12.23499 -11.73268 -11.62780 -11.42477 -11.27741 -11.16977 -10.96864 -10.93441 -10.55175 -10.04824 -9.86535 -9.67887 -9.41632 -9.16790 -8.79501 -6.30238 -4.34074 -0.28322 0.61106 1.22250 1.29178 2.69533 2.81847 3.12640 3.18517 3.23125 3.33748 4.18740 4.20080 4.38224 4.48629 4.60610 4.81115 5.01199 5.11792 5.44272 5.60004 5.65852 5.76279 5.96041 6.02115 6.23527 6.27057 6.35004 6.64060 6.77909 6.97497 7.27808 7.59156 8.19055 8.40711 8.81528 9.25452 10.81554 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.025039 B = 0.005277 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.979206 B = 5304.990359 C = 5925.186052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.028 3.972 3 H 0.073 0.927 4 C -0.513 4.513 5 H 0.089 0.911 6 C 0.079 3.921 7 N -0.881 5.881 8 Si 0.868 3.132 9 H -0.272 1.272 10 H -0.280 1.280 11 H -0.258 1.258 12 C 0.460 3.540 13 O -0.477 6.477 14 O -0.303 6.303 15 C 0.107 3.893 16 C -0.074 4.074 17 C -0.102 4.102 18 C -0.067 4.067 19 C -0.028 4.028 20 N 0.030 4.970 21 O -0.155 6.155 22 O -0.161 6.161 23 C -0.070 4.070 24 H 0.061 0.939 25 H 0.038 0.962 26 H 0.054 0.946 27 H 0.270 0.730 28 H 0.152 0.848 29 H 0.154 0.846 30 H 0.156 0.844 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.106 0.541 17.068 17.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.008 3.992 3 H 0.091 0.909 4 C -0.550 4.550 5 H 0.107 0.893 6 C -0.125 4.125 7 N -0.517 5.517 8 Si 0.694 3.306 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.182 1.182 12 C 0.303 3.697 13 O -0.358 6.358 14 O -0.220 6.220 15 C 0.064 3.936 16 C -0.093 4.093 17 C -0.121 4.121 18 C -0.086 4.086 19 C -0.111 4.111 20 N 0.550 4.450 21 O -0.372 6.372 22 O -0.376 6.376 23 C -0.089 4.089 24 H 0.080 0.920 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.169 0.831 29 H 0.172 0.828 30 H 0.173 0.827 31 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.517 0.127 16.670 17.272 hybrid contribution 0.577 0.954 -0.091 1.118 sum -3.940 1.080 16.580 17.076 Atomic orbital electron populations 1.21970 0.95418 1.01771 1.00275 1.19352 0.95163 0.97364 0.87277 0.90901 1.20721 1.45031 0.96292 0.92936 0.89313 1.24996 0.93811 0.98492 0.95186 1.69861 1.43806 1.36163 1.01861 0.86979 0.79379 0.85963 0.78328 1.19729 1.20556 1.18240 1.26157 0.77501 0.83729 0.82272 1.90618 1.34664 1.25240 1.85283 1.84930 1.64954 1.57788 1.14354 1.18405 0.90156 0.95276 0.89754 1.21661 1.01880 0.91930 0.93819 1.21049 0.93316 0.99853 0.97865 1.21069 0.93998 0.95248 0.98280 1.20837 0.80809 1.07862 1.01560 1.43565 1.03288 0.98631 0.99559 1.94587 1.62033 1.36580 1.43969 1.94505 1.74192 1.48102 1.20839 1.21243 0.95079 0.97214 0.95402 0.91962 0.94259 0.92731 0.92016 0.83065 0.82794 0.82666 0.82470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.14 37.16 0.34 -2.21 16 2 C 0.03 0.62 2.36 -92.93 -0.22 0.40 16 3 H 0.07 1.56 5.13 -51.93 -0.27 1.29 16 4 C -0.51 -13.82 8.37 -34.44 -0.29 -14.10 16 5 H 0.09 2.71 7.61 -52.49 -0.40 2.31 16 6 C 0.08 2.16 5.47 -17.82 -0.10 2.07 16 7 N -0.88 -25.75 13.96 55.43 0.77 -24.98 16 8 Si 0.87 19.59 27.25 -169.99 -4.63 14.96 16 9 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.26 -5.31 6.43 56.52 0.36 -4.95 16 12 C 0.46 9.67 7.03 36.00 0.25 9.92 16 13 O -0.48 -11.48 15.19 -18.75 -0.28 -11.76 16 14 O -0.30 -5.23 9.85 -23.62 -0.23 -5.46 16 15 C 0.11 1.61 5.26 -39.22 -0.21 1.41 16 16 C -0.07 -0.83 9.99 -39.43 -0.39 -1.22 16 17 C -0.10 -0.90 10.04 -39.61 -0.40 -1.30 16 18 C -0.07 -0.70 9.55 -39.56 -0.38 -1.08 16 19 C -0.03 -0.39 6.85 -79.97 -0.55 -0.94 16 20 N 0.03 0.47 4.45 33.95 0.15 0.62 16 21 O -0.15 -2.66 18.45 -29.46 -0.54 -3.20 16 22 O -0.16 -2.43 18.45 -29.46 -0.54 -2.98 16 23 C -0.07 -1.08 8.85 -39.43 -0.35 -1.43 16 24 H 0.06 1.14 8.13 -51.92 -0.42 0.72 16 25 H 0.04 0.61 8.00 -51.93 -0.42 0.20 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 29 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 30 H 0.16 1.28 7.61 -52.49 -0.40 0.88 16 31 H 0.16 2.56 7.61 -52.49 -0.40 2.16 16 LS Contribution 287.78 15.07 4.34 4.34 Total: -1.00 -31.19 287.78 -6.00 -37.19 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -2.74 Total: -0.25 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.28 Total: -8.48 kcal Atomic # 7 Polarization: -25.29 SS G_CDS: 0.92 Total: -24.36 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -1.60 Total: -23.40 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.63 Total: 14.96 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -31.19 -6.00 -37.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850742961.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.512 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds