Wall clock time and date at job start Mon Mar 30 2020 06:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47596 * 2 1 4 4 C 1.50703 * 109.47235 * 239.99842 * 2 1 3 5 5 H 1.07993 * 120.00368 * 274.77689 * 4 2 1 6 6 C 1.37881 * 119.99720 * 94.77700 * 4 2 1 7 7 N 1.31518 * 119.99848 * 184.19923 * 6 4 2 8 8 Si 1.86801 * 120.00065 * 4.19902 * 6 4 2 9 9 H 1.48497 * 109.47206 * 94.05993 * 8 6 4 10 10 H 1.48504 * 109.47000 * 214.05983 * 8 6 4 11 11 H 1.48499 * 109.47166 * 334.06013 * 8 6 4 12 12 C 1.50695 * 109.47249 * 120.00116 * 2 1 3 13 13 O 1.20834 * 120.00433 * 119.99673 * 12 2 1 14 14 O 1.34264 * 120.00156 * 300.00414 * 12 2 1 15 15 C 1.35923 * 117.00259 * 185.82598 * 14 12 2 16 16 C 1.38758 * 120.05293 * 248.97611 * 15 14 12 17 17 C 1.38115 * 119.94521 * 179.79016 * 16 15 14 18 18 C 1.38296 * 120.05608 * 0.48445 * 17 16 15 19 19 C 1.38244 * 120.10694 * 359.74389 * 18 17 16 20 20 N 1.48013 * 119.96663 * 179.97438 * 19 18 17 21 21 O 1.21805 * 119.99541 * 180.02562 * 20 19 18 22 22 O 1.21798 * 120.00563 * 0.03086 * 20 19 18 23 23 C 1.38167 * 120.05845 * 0.02903 * 19 18 17 24 24 H 1.09008 * 109.46767 * 55.14145 * 1 2 3 25 25 H 1.08996 * 109.47047 * 295.14378 * 1 2 3 26 26 H 1.09001 * 109.47112 * 175.13937 * 1 2 3 27 27 H 0.96999 * 119.99978 * 179.97438 * 7 6 4 28 28 H 1.08006 * 120.02374 * 0.02562 * 16 15 14 29 29 H 1.07999 * 119.97341 * 180.20943 * 17 16 15 30 30 H 1.07998 * 119.94482 * 179.76658 * 18 17 16 31 31 H 1.07997 * 120.02651 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1389 -1.7851 -1.2279 6 6 2.3559 0.0117 -2.3596 7 7 2.7152 -0.6136 -3.4595 8 14 2.2839 1.8780 -2.3272 9 1 3.6280 2.4197 -2.0027 10 1 1.8559 2.3800 -3.6576 11 1 1.3107 2.3180 -1.2955 12 6 2.0323 -0.7104 1.2304 13 8 2.7270 -1.6929 1.1196 14 8 1.7079 -0.2518 2.4499 15 6 2.2910 -0.8635 3.5145 16 6 1.5272 -1.6406 4.3736 17 6 2.1228 -2.2646 5.4522 18 6 3.4774 -2.1074 5.6821 19 6 4.2397 -1.3299 4.8303 20 7 5.6891 -1.1632 5.0796 21 8 6.3612 -0.4779 4.3297 22 8 6.2099 -1.7115 6.0344 23 6 3.6495 -0.7073 3.7472 24 1 -0.3633 0.5874 -0.8433 25 1 -0.3633 0.4366 0.9303 26 1 -0.3633 -1.0240 -0.0871 27 1 2.9425 -0.1056 -4.2539 28 1 0.4685 -1.7604 4.1967 29 1 1.5294 -2.8723 6.1192 30 1 3.9406 -2.5931 6.5282 31 1 4.2454 -0.0996 3.0824 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850742961.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:39 Heat of formation + Delta-G solvation = -73.379363 kcal Electronic energy + Delta-G solvation = -19447.822644 eV Core-core repulsion = 16083.582286 eV Total energy + Delta-G solvation = -3364.240358 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.43569 -42.49138 -40.08162 -38.02097 -37.81030 -35.91436 -33.58589 -33.14731 -31.75056 -27.85580 -27.36745 -26.14698 -23.98267 -23.54398 -21.90290 -20.48992 -19.92639 -19.37420 -18.77937 -18.35972 -17.91517 -17.73586 -17.58544 -16.31767 -16.00346 -15.31429 -15.04722 -14.56655 -14.35236 -14.18992 -13.59797 -13.33454 -13.22014 -13.05510 -12.90582 -12.72429 -12.66451 -12.43301 -12.34201 -12.20399 -11.81225 -11.44623 -11.27173 -10.84781 -10.74866 -10.28757 -8.38399 -6.48966 -1.38675 -0.41729 0.13704 0.19132 1.10938 1.34171 1.36038 1.46266 1.55438 2.23453 2.27639 2.97898 3.27318 3.32246 3.49825 3.75954 3.85253 4.01115 4.27269 4.39160 4.53635 4.60421 4.74293 4.80294 4.85487 5.00313 5.06032 5.16121 5.38329 5.43440 5.47069 6.12704 6.35488 6.60482 6.80565 7.15424 8.78135 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.025039 B = 0.005277 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.979206 B = 5304.990359 C = 5925.186052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.021 3.979 3 H 0.087 0.913 4 C -0.522 4.522 5 H 0.032 0.968 6 C 0.018 3.982 7 N -0.939 5.939 8 Si 0.936 3.064 9 H -0.273 1.273 10 H -0.276 1.276 11 H -0.217 1.217 12 C 0.468 3.532 13 O -0.519 6.519 14 O -0.289 6.289 15 C 0.067 3.933 16 C -0.058 4.058 17 C -0.078 4.078 18 C -0.048 4.048 19 C -0.048 4.048 20 N 0.030 4.970 21 O -0.225 6.225 22 O -0.124 6.124 23 C -0.092 4.092 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.272 0.728 28 H 0.184 0.816 29 H 0.212 0.788 30 H 0.188 0.812 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.592 0.996 20.637 21.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.001 3.999 3 H 0.104 0.896 4 C -0.559 4.559 5 H 0.051 0.949 6 C -0.180 4.180 7 N -0.577 5.577 8 Si 0.757 3.243 9 H -0.199 1.199 10 H -0.201 1.201 11 H -0.139 1.139 12 C 0.314 3.686 13 O -0.405 6.405 14 O -0.205 6.205 15 C 0.024 3.976 16 C -0.077 4.077 17 C -0.095 4.095 18 C -0.067 4.067 19 C -0.131 4.131 20 N 0.546 4.454 21 O -0.425 6.425 22 O -0.353 6.353 23 C -0.112 4.112 24 H 0.086 0.914 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.081 0.919 28 H 0.201 0.799 29 H 0.229 0.771 30 H 0.206 0.794 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.004 0.688 20.167 21.360 hybrid contribution 1.315 0.571 -0.912 1.699 sum -5.688 1.259 19.255 20.117 Atomic orbital electron populations 1.21869 0.92177 1.02056 1.02609 1.19331 0.97558 0.97166 0.85839 0.89577 1.20804 1.45280 0.94166 0.95646 0.94937 1.25974 0.93216 1.04489 0.94360 1.70028 1.46053 1.38637 1.02953 0.85904 0.80237 0.78527 0.79644 1.19879 1.20108 1.13941 1.25654 0.76497 0.82821 0.83671 1.90603 1.36445 1.27117 1.86288 1.84822 1.64282 1.57655 1.13710 1.18775 0.90517 0.98147 0.90116 1.22143 1.03135 0.89531 0.92842 1.21722 0.92559 0.98280 0.96971 1.21669 0.94590 0.92851 0.97596 1.21037 0.79728 1.09664 1.02675 1.43844 1.04152 0.98176 0.99210 1.94608 1.63081 1.39360 1.45463 1.94443 1.74679 1.46241 1.19893 1.21135 0.95591 0.98235 0.96221 0.91415 0.90305 0.93330 0.91899 0.79900 0.77076 0.79440 0.85223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.54 9.14 71.98 0.66 -3.88 16 2 C 0.02 0.90 2.36 -12.29 -0.03 0.87 16 3 H 0.09 3.53 5.13 -2.39 -0.01 3.52 16 4 C -0.52 -29.33 8.37 25.60 0.21 -29.12 16 5 H 0.03 2.13 7.61 -2.91 -0.02 2.11 16 6 C 0.02 1.04 5.47 84.66 0.46 1.50 16 7 N -0.94 -57.58 13.96 21.45 0.30 -57.28 16 8 Si 0.94 40.32 27.25 68.60 1.87 42.19 16 9 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 10 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 11 H -0.22 -7.88 6.43 99.48 0.64 -7.24 16 12 C 0.47 19.90 7.03 71.23 0.50 20.40 16 13 O -0.52 -26.14 15.19 21.94 0.33 -25.81 16 14 O -0.29 -9.64 9.85 4.55 0.04 -9.59 16 15 C 0.07 1.92 5.26 22.51 0.12 2.04 16 16 C -0.06 -1.04 9.99 22.36 0.22 -0.82 16 17 C -0.08 -0.89 10.04 22.25 0.22 -0.67 16 18 C -0.05 -0.81 9.55 22.28 0.21 -0.59 16 19 C -0.05 -1.30 6.85 36.36 0.25 -1.05 16 20 N 0.03 0.94 4.45 -46.50 -0.21 0.73 16 21 O -0.22 -8.30 18.45 18.88 0.35 -7.95 16 22 O -0.12 -3.55 18.45 18.89 0.35 -3.20 16 23 C -0.09 -2.90 8.85 22.36 0.20 -2.70 16 24 H 0.07 2.30 8.13 -2.38 -0.02 2.28 16 25 H 0.08 2.15 8.00 -2.39 -0.02 2.13 16 26 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.27 15.43 8.31 -92.71 -0.77 14.65 16 28 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 29 H 0.21 0.19 8.06 -2.91 -0.02 0.17 16 30 H 0.19 1.97 7.61 -2.91 -0.02 1.95 16 31 H 0.13 4.66 7.61 -2.91 -0.02 4.64 16 Total: -1.00 -76.10 287.78 7.17 -68.93 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 1.10 Total: 6.00 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: 3.03 Total: -14.03 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.09 Total: -56.55 kcal Atomic # 8 Polarization: -47.62 SS G_CDS: 1.07 Total: -46.55 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 1.87 Total: 42.19 kcal Total: -76.10 7.17 -68.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850742961.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.451 kcal (2) G-P(sol) polarization free energy of solvation -76.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds