Wall clock time and date at job start Mon Mar 30 2020 06:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46935 * 2 1 4 4 C 1.50703 * 109.47204 * 120.00210 * 2 1 3 5 5 H 1.07999 * 119.99813 * 93.94210 * 4 2 1 6 6 C 1.37871 * 119.99943 * 273.94022 * 4 2 1 7 7 N 1.31511 * 120.00170 * 174.62195 * 6 4 2 8 8 Si 1.86807 * 120.00147 * 354.62280 * 6 4 2 9 9 H 1.48508 * 109.46858 * 275.21107 * 8 6 4 10 10 H 1.48496 * 109.47011 * 35.20830 * 8 6 4 11 11 H 1.48501 * 109.46892 * 155.21167 * 8 6 4 12 12 C 1.50696 * 109.47004 * 240.00274 * 2 1 3 13 13 O 1.20828 * 120.00016 * 240.00005 * 12 2 1 14 14 O 1.34268 * 120.00050 * 59.99668 * 12 2 1 15 15 C 1.35921 * 116.99745 * 185.46410 * 14 12 2 16 16 C 1.38753 * 120.05794 * 255.57004 * 15 14 12 17 17 C 1.38126 * 119.94591 * 179.70646 * 16 15 14 18 18 C 1.38290 * 120.05407 * 0.59166 * 17 16 15 19 19 C 1.38244 * 120.11046 * 359.68654 * 18 17 16 20 20 N 1.48021 * 119.97423 * 179.97438 * 19 18 17 21 21 O 1.21801 * 120.00195 * 180.02562 * 20 19 18 22 22 O 1.21798 * 119.99628 * 0.02562 * 20 19 18 23 23 C 1.38174 * 120.05548 * 0.02562 * 19 18 17 24 24 H 1.08996 * 109.46974 * 294.95082 * 1 2 3 25 25 H 1.08997 * 109.46868 * 54.95166 * 1 2 3 26 26 H 1.09003 * 109.46960 * 174.95580 * 1 2 3 27 27 H 0.96999 * 120.00562 * 179.97438 * 7 6 4 28 28 H 1.07998 * 120.02737 * 0.02562 * 16 15 14 29 29 H 1.07994 * 119.97485 * 180.30103 * 17 16 15 30 30 H 1.07994 * 119.94457 * 179.70415 * 18 17 16 31 31 H 1.08001 * 120.02826 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.2730 -1.7624 1.1862 6 6 2.1849 -0.0175 2.4126 7 7 2.5212 -0.6574 3.5112 8 14 1.9136 1.8303 2.4539 9 1 3.1625 2.5231 2.0469 10 1 0.8196 2.1910 1.5168 11 1 1.5432 2.2455 3.8307 12 6 2.0324 -0.7103 -1.2305 13 8 2.7270 -1.6927 -1.1197 14 8 1.7079 -0.2516 -2.4499 15 6 2.0969 -1.0014 -3.5148 16 6 3.1743 -0.5995 -4.2913 17 6 3.5714 -1.3664 -5.3693 18 6 2.8884 -2.5275 -5.6823 19 6 1.8110 -2.9270 -4.9137 20 7 1.0818 -4.1699 -5.2519 21 8 0.1322 -4.5221 -4.5753 22 8 1.4315 -4.8405 -6.2067 23 6 1.4136 -2.1664 -3.8308 24 1 -0.3633 0.4335 0.9317 25 1 -0.3633 0.5901 -0.8413 26 1 -0.3633 -1.0237 -0.0904 27 1 2.6289 -0.1699 4.3429 28 1 3.7053 0.3094 -4.0499 29 1 4.4130 -1.0567 -5.9710 30 1 3.1975 -3.1232 -6.5284 31 1 0.5721 -2.4792 -3.2304 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850742962.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:41 Heat of formation + Delta-G solvation = -54.536404 kcal Electronic energy + Delta-G solvation = -19419.486886 eV Core-core repulsion = 16056.063620 eV Total energy + Delta-G solvation = -3363.423266 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.083 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.27643 -41.11790 -38.90910 -36.66046 -36.51700 -34.07583 -32.19728 -31.65134 -30.66760 -26.74143 -25.44772 -24.73625 -22.95820 -22.26437 -20.44340 -19.24923 -18.72751 -17.60555 -17.46095 -16.93151 -16.72403 -16.41710 -16.23870 -14.66986 -14.52353 -14.35992 -13.63909 -13.10309 -12.87127 -12.64870 -12.42009 -12.29253 -11.76153 -11.64916 -11.42020 -11.28981 -11.19830 -10.93627 -10.83425 -10.63891 -10.04142 -9.89899 -9.76536 -9.42642 -9.19001 -8.78532 -6.28780 -4.32849 -0.30541 0.58317 1.20021 1.26216 2.67592 2.78424 3.12441 3.19485 3.22504 3.32884 4.18396 4.19519 4.36423 4.47135 4.59277 4.79070 5.01547 5.08151 5.41670 5.56899 5.64481 5.76498 5.94727 5.98177 6.24059 6.26652 6.35093 6.63351 6.75679 6.98413 7.27683 7.56532 8.19432 8.38353 8.84112 9.26661 10.83062 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.031779 B = 0.004778 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.859912 B = 5858.477776 C = 6211.459008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.033 3.967 3 H 0.068 0.932 4 C -0.518 4.518 5 H 0.091 0.909 6 C 0.080 3.920 7 N -0.883 5.883 8 Si 0.867 3.133 9 H -0.272 1.272 10 H -0.258 1.258 11 H -0.282 1.282 12 C 0.465 3.535 13 O -0.477 6.477 14 O -0.303 6.303 15 C 0.107 3.893 16 C -0.074 4.074 17 C -0.102 4.102 18 C -0.065 4.065 19 C -0.029 4.029 20 N 0.030 4.970 21 O -0.155 6.155 22 O -0.161 6.161 23 C -0.068 4.068 24 H 0.065 0.935 25 H 0.039 0.961 26 H 0.052 0.948 27 H 0.269 0.731 28 H 0.151 0.849 29 H 0.155 0.845 30 H 0.156 0.844 31 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.068 2.904 -17.107 17.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.013 3.987 3 H 0.085 0.915 4 C -0.555 4.555 5 H 0.109 0.891 6 C -0.124 4.124 7 N -0.519 5.519 8 Si 0.693 3.307 9 H -0.198 1.198 10 H -0.182 1.182 11 H -0.208 1.208 12 C 0.308 3.692 13 O -0.359 6.359 14 O -0.221 6.221 15 C 0.064 3.936 16 C -0.092 4.092 17 C -0.121 4.121 18 C -0.084 4.084 19 C -0.112 4.112 20 N 0.550 4.450 21 O -0.372 6.372 22 O -0.376 6.376 23 C -0.087 4.087 24 H 0.084 0.916 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.169 0.831 29 H 0.172 0.828 30 H 0.174 0.826 31 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.576 3.185 -16.666 16.977 hybrid contribution -0.211 0.544 0.101 0.592 sum 0.365 3.729 -16.564 16.983 Atomic orbital electron populations 1.22035 0.95400 1.01231 1.01047 1.19214 0.94935 0.97203 0.87320 0.91458 1.20751 1.45570 0.98704 0.90454 0.89122 1.24938 0.93978 0.98275 0.95210 1.69858 1.45945 1.36311 0.99778 0.87035 0.79556 0.85907 0.78206 1.19779 1.18224 1.20760 1.25817 0.77025 0.84026 0.82295 1.90617 1.34078 1.25844 1.85320 1.84903 1.73061 1.49834 1.14264 1.18358 0.94153 0.91286 0.89833 1.21741 0.92968 1.00385 0.94111 1.21059 1.00214 0.93414 0.97390 1.21079 0.91950 0.96701 0.98661 1.20838 0.99387 0.89197 1.01784 1.43560 1.00143 1.01777 0.99533 1.94578 1.18506 1.74450 1.49671 1.94510 1.70906 1.52707 1.19498 1.21216 1.00202 0.92534 0.94766 0.91565 0.94223 0.92916 0.92041 0.83093 0.82775 0.82633 0.82408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.77 37.16 0.33 -2.35 16 2 C 0.03 0.72 2.30 -92.92 -0.21 0.51 16 3 H 0.07 1.41 5.83 -51.93 -0.30 1.11 16 4 C -0.52 -13.95 8.50 -34.44 -0.29 -14.25 16 5 H 0.09 2.79 7.37 -52.49 -0.39 2.40 16 6 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 7 N -0.88 -25.76 13.96 55.43 0.77 -24.98 16 8 Si 0.87 19.37 26.25 -169.99 -4.46 14.90 16 9 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.26 -5.27 6.24 56.52 0.35 -4.92 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 C 0.46 9.70 7.09 36.00 0.26 9.96 16 13 O -0.48 -11.39 15.26 -18.75 -0.29 -11.68 16 14 O -0.30 -5.19 9.96 -23.62 -0.24 -5.43 16 15 C 0.11 1.59 5.08 -39.22 -0.20 1.39 16 16 C -0.07 -0.83 9.99 -39.43 -0.39 -1.22 16 17 C -0.10 -0.90 10.04 -39.60 -0.40 -1.30 16 18 C -0.06 -0.67 9.55 -39.56 -0.38 -1.05 16 19 C -0.03 -0.40 6.85 -79.97 -0.55 -0.95 16 20 N 0.03 0.46 4.45 33.95 0.15 0.61 16 21 O -0.16 -2.56 18.45 -29.46 -0.54 -3.10 16 22 O -0.16 -2.37 18.45 -29.46 -0.54 -2.91 16 23 C -0.07 -1.01 9.20 -39.43 -0.36 -1.37 16 24 H 0.07 1.28 6.90 -51.93 -0.36 0.93 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 27 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 30 H 0.16 1.26 7.60 -52.49 -0.40 0.86 16 31 H 0.16 2.41 7.61 -52.49 -0.40 2.01 16 LS Contribution 286.10 15.07 4.31 4.31 Total: -1.00 -31.07 286.10 -5.86 -36.93 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -2.72 Total: -0.09 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -2.30 Total: -8.56 kcal Atomic # 7 Polarization: -25.30 SS G_CDS: 0.92 Total: -24.38 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -1.61 Total: -23.12 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.46 Total: 14.90 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -31.07 -5.86 -36.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850742962.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.611 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds