Wall clock time and date at job start Mon Mar 30 2020 06:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46935 * 2 1 4 4 C 1.50703 * 109.47204 * 120.00210 * 2 1 3 5 5 H 1.07999 * 119.99813 * 93.94210 * 4 2 1 6 6 C 1.37871 * 119.99943 * 273.94022 * 4 2 1 7 7 N 1.31511 * 120.00170 * 174.62195 * 6 4 2 8 8 Si 1.86807 * 120.00147 * 354.62280 * 6 4 2 9 9 H 1.48508 * 109.46858 * 275.21107 * 8 6 4 10 10 H 1.48496 * 109.47011 * 35.20830 * 8 6 4 11 11 H 1.48501 * 109.46892 * 155.21167 * 8 6 4 12 12 C 1.50696 * 109.47004 * 240.00274 * 2 1 3 13 13 O 1.20828 * 120.00016 * 240.00005 * 12 2 1 14 14 O 1.34268 * 120.00050 * 59.99668 * 12 2 1 15 15 C 1.35921 * 116.99745 * 185.46410 * 14 12 2 16 16 C 1.38753 * 120.05794 * 255.57004 * 15 14 12 17 17 C 1.38126 * 119.94591 * 179.70646 * 16 15 14 18 18 C 1.38290 * 120.05407 * 0.59166 * 17 16 15 19 19 C 1.38244 * 120.11046 * 359.68654 * 18 17 16 20 20 N 1.48021 * 119.97423 * 179.97438 * 19 18 17 21 21 O 1.21801 * 120.00195 * 180.02562 * 20 19 18 22 22 O 1.21798 * 119.99628 * 0.02562 * 20 19 18 23 23 C 1.38174 * 120.05548 * 0.02562 * 19 18 17 24 24 H 1.08996 * 109.46974 * 294.95082 * 1 2 3 25 25 H 1.08997 * 109.46868 * 54.95166 * 1 2 3 26 26 H 1.09003 * 109.46960 * 174.95580 * 1 2 3 27 27 H 0.96999 * 120.00562 * 179.97438 * 7 6 4 28 28 H 1.07998 * 120.02737 * 0.02562 * 16 15 14 29 29 H 1.07994 * 119.97485 * 180.30103 * 17 16 15 30 30 H 1.07994 * 119.94457 * 179.70415 * 18 17 16 31 31 H 1.08001 * 120.02826 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.2730 -1.7624 1.1862 6 6 2.1849 -0.0175 2.4126 7 7 2.5212 -0.6574 3.5112 8 14 1.9136 1.8303 2.4539 9 1 3.1625 2.5231 2.0469 10 1 0.8196 2.1910 1.5168 11 1 1.5432 2.2455 3.8307 12 6 2.0324 -0.7103 -1.2305 13 8 2.7270 -1.6927 -1.1197 14 8 1.7079 -0.2516 -2.4499 15 6 2.0969 -1.0014 -3.5148 16 6 3.1743 -0.5995 -4.2913 17 6 3.5714 -1.3664 -5.3693 18 6 2.8884 -2.5275 -5.6823 19 6 1.8110 -2.9270 -4.9137 20 7 1.0818 -4.1699 -5.2519 21 8 0.1322 -4.5221 -4.5753 22 8 1.4315 -4.8405 -6.2067 23 6 1.4136 -2.1664 -3.8308 24 1 -0.3633 0.4335 0.9317 25 1 -0.3633 0.5901 -0.8413 26 1 -0.3633 -1.0237 -0.0904 27 1 2.6289 -0.1699 4.3429 28 1 3.7053 0.3094 -4.0499 29 1 4.4130 -1.0567 -5.9710 30 1 3.1975 -3.1232 -6.5284 31 1 0.5721 -2.4792 -3.2304 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850742962.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:41 Heat of formation + Delta-G solvation = -73.170595 kcal Electronic energy + Delta-G solvation = -19420.294926 eV Core-core repulsion = 16056.063620 eV Total energy + Delta-G solvation = -3364.231305 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 265.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.42916 -42.49382 -40.09461 -38.03407 -37.80409 -35.93503 -33.57116 -33.14153 -31.77280 -27.84570 -27.33963 -26.18291 -24.04316 -23.53080 -21.91997 -20.50357 -19.91078 -19.25056 -18.77190 -18.35605 -17.99485 -17.71457 -17.60176 -16.33723 -15.93112 -15.37849 -15.08954 -14.57328 -14.27425 -14.16474 -13.64125 -13.37117 -13.26976 -13.03000 -12.88851 -12.69383 -12.63346 -12.42234 -12.36689 -12.15670 -11.76010 -11.49166 -11.34095 -10.82056 -10.75868 -10.30914 -8.35603 -6.47432 -1.38424 -0.43165 0.13716 0.18601 1.09498 1.38116 1.38974 1.50461 1.56951 2.23570 2.31455 2.99109 3.27265 3.31360 3.49276 3.74349 3.84798 3.99856 4.26453 4.36529 4.52069 4.57594 4.74936 4.79072 4.82442 4.99150 5.02212 5.14144 5.36816 5.40827 5.44246 6.14447 6.36338 6.62795 6.79205 7.17430 8.80971 Molecular weight = 265.08amu Principal moments of inertia in cm(-1) A = 0.031779 B = 0.004778 C = 0.004507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.859912 B = 5858.477776 C = 6211.459008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.027 3.973 3 H 0.090 0.910 4 C -0.529 4.529 5 H 0.030 0.970 6 C 0.019 3.981 7 N -0.941 5.941 8 Si 0.940 3.060 9 H -0.261 1.261 10 H -0.220 1.220 11 H -0.283 1.283 12 C 0.473 3.527 13 O -0.519 6.519 14 O -0.289 6.289 15 C 0.066 3.934 16 C -0.062 4.062 17 C -0.079 4.079 18 C -0.047 4.047 19 C -0.048 4.048 20 N 0.030 4.970 21 O -0.218 6.218 22 O -0.129 6.129 23 C -0.086 4.086 24 H 0.066 0.934 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.272 0.728 28 H 0.179 0.821 29 H 0.210 0.790 30 H 0.188 0.812 31 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.995 5.800 -20.294 21.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.007 3.993 3 H 0.108 0.892 4 C -0.566 4.566 5 H 0.048 0.952 6 C -0.179 4.179 7 N -0.579 5.579 8 Si 0.761 3.239 9 H -0.186 1.186 10 H -0.142 1.142 11 H -0.209 1.209 12 C 0.318 3.682 13 O -0.404 6.404 14 O -0.205 6.205 15 C 0.024 3.976 16 C -0.080 4.080 17 C -0.097 4.097 18 C -0.066 4.066 19 C -0.131 4.131 20 N 0.547 4.453 21 O -0.420 6.420 22 O -0.356 6.356 23 C -0.106 4.106 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.197 0.803 29 H 0.227 0.773 30 H 0.205 0.795 31 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.519 6.094 -19.804 20.776 hybrid contribution -0.389 -0.480 0.850 1.051 sum 1.130 5.614 -18.955 19.801 Atomic orbital electron populations 1.21952 0.93021 1.01519 1.02727 1.19158 0.96640 0.97521 0.85950 0.89210 1.20816 1.45897 0.96581 0.93335 0.95183 1.25967 0.93294 1.04495 0.94186 1.70039 1.48107 1.38989 1.00794 0.85881 0.81053 0.78003 0.79001 1.18595 1.14182 1.20902 1.25371 0.76104 0.83074 0.83647 1.90600 1.35997 1.27538 1.86306 1.84809 1.72742 1.49348 1.13616 1.18714 0.96689 0.92151 0.90081 1.22190 0.90992 1.01273 0.93540 1.21698 1.00354 0.91460 0.96159 1.21658 0.89723 0.97038 0.98154 1.21030 1.00721 0.88626 1.02748 1.43820 1.00005 1.02270 0.99240 1.94597 1.20452 1.75874 1.51057 1.94454 1.69871 1.52587 1.18659 1.21126 1.00368 0.93450 0.95657 0.91457 0.90376 0.93954 0.91898 0.80325 0.77275 0.79451 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.99 8.77 71.98 0.63 -4.36 16 2 C 0.03 1.17 2.30 -12.28 -0.03 1.14 16 3 H 0.09 3.52 5.83 -2.39 -0.01 3.50 16 4 C -0.53 -29.73 8.50 25.60 0.22 -29.51 16 5 H 0.03 2.00 7.37 -2.91 -0.02 1.97 16 6 C 0.02 1.07 5.47 84.65 0.46 1.53 16 7 N -0.94 -57.37 13.96 21.44 0.30 -57.07 16 8 Si 0.94 39.15 26.25 68.60 1.80 40.95 16 9 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 10 H -0.22 -7.75 6.24 99.48 0.62 -7.13 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 12 C 0.47 19.95 7.09 71.23 0.51 20.45 16 13 O -0.52 -25.90 15.26 21.95 0.34 -25.57 16 14 O -0.29 -9.61 9.96 4.53 0.05 -9.57 16 15 C 0.07 1.88 5.08 22.51 0.11 2.00 16 16 C -0.06 -1.15 9.99 22.37 0.22 -0.92 16 17 C -0.08 -0.95 10.04 22.26 0.22 -0.73 16 18 C -0.05 -0.78 9.55 22.28 0.21 -0.57 16 19 C -0.05 -1.27 6.85 36.36 0.25 -1.02 16 20 N 0.03 0.92 4.45 -46.49 -0.21 0.71 16 21 O -0.22 -7.67 18.45 18.89 0.35 -7.32 16 22 O -0.13 -3.60 18.45 18.89 0.35 -3.25 16 23 C -0.09 -2.62 9.20 22.37 0.21 -2.41 16 24 H 0.07 2.47 6.90 -2.39 -0.02 2.46 16 25 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 28 H 0.18 2.33 8.06 -2.91 -0.02 2.31 16 29 H 0.21 0.36 8.06 -2.91 -0.02 0.34 16 30 H 0.19 1.96 7.60 -2.91 -0.02 1.94 16 31 H 0.14 4.56 7.61 -2.91 -0.02 4.54 16 Total: -1.00 -75.04 286.10 7.07 -67.97 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.08 Total: 7.55 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 3.02 Total: -14.40 kcal Atomic # 7 Polarization: -56.45 SS G_CDS: 0.09 Total: -56.36 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: 1.08 Total: -45.70 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 1.80 Total: 40.95 kcal Total: -75.04 7.07 -67.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850742962.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.201 kcal (2) G-P(sol) polarization free energy of solvation -75.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds