Wall clock time and date at job start Mon Mar 30 2020 06:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00379 * 2 1 4 4 H 1.48500 * 109.47209 * 239.99784 * 3 2 1 5 5 H 1.48501 * 109.47139 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47324 * 119.99513 * 3 2 1 7 7 C 1.37875 * 119.99688 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00126 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99933 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47152 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47300 * 180.02562 * 10 9 7 12 12 C 1.50692 * 109.47097 * 179.97438 * 11 10 9 13 13 N 1.30976 * 126.43111 * 90.00199 * 12 11 10 14 14 C 1.35248 * 105.58030 * 180.02562 * 13 12 11 15 15 C 1.48311 * 126.42087 * 179.97438 * 14 13 12 16 16 C 1.38855 * 122.86276 * 359.73327 * 15 14 13 17 17 N 1.29784 * 116.83547 * 179.81152 * 16 15 14 18 18 S 1.69540 * 107.50380 * 0.42346 * 17 16 15 19 19 C 1.36343 * 122.86250 * 180.02562 * 15 14 13 20 20 N 1.30824 * 107.15770 * 359.97438 * 14 13 12 21 21 O 1.21293 * 110.08772 * 359.97438 * 20 14 13 22 22 H 0.97002 * 119.99336 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46993 * 60.00416 * 9 7 2 24 24 H 1.08997 * 109.47599 * 299.99921 * 9 7 2 25 25 H 1.08997 * 109.47323 * 59.99914 * 10 9 7 26 26 H 1.09006 * 109.46578 * 300.00014 * 10 9 7 27 27 H 1.09004 * 109.47069 * 60.00019 * 11 10 9 28 28 H 1.08998 * 109.47174 * 300.00127 * 11 10 9 29 29 H 1.07996 * 121.58188 * 0.03486 * 16 15 14 30 30 H 1.08001 * 127.25624 * 359.96548 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2451 -3.6622 0.0027 11 6 1.4801 -4.9872 0.0033 12 6 2.4593 -6.1326 0.0037 13 7 2.9647 -6.7234 1.0577 14 6 3.7864 -7.6839 0.5766 15 6 4.5977 -8.6314 1.3788 16 6 4.6042 -8.6298 2.7673 17 7 5.3547 -9.5133 3.3508 18 16 6.1234 -10.4117 2.1358 19 6 5.4053 -9.5747 0.8157 20 7 3.7314 -7.6205 -0.7289 21 8 2.9744 -6.7369 -1.0716 22 1 -0.4849 0.8401 -0.0004 23 1 0.6239 -2.5575 -0.8881 24 1 0.6246 -2.5563 0.8919 25 1 2.8718 -3.6037 0.8926 26 1 2.8717 -3.6052 -0.8874 27 1 0.8537 -5.0454 -0.8869 28 1 0.8531 -5.0443 0.8931 29 1 4.0100 -7.9289 3.3348 30 1 5.5613 -9.7576 -0.2373 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924151066.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:25 Heat of formation + Delta-G solvation = 91.756206 kcal Electronic energy + Delta-G solvation = -16367.270916 eV Core-core repulsion = 13485.236996 eV Total energy + Delta-G solvation = -2882.033920 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.48989 -39.28965 -35.96558 -35.08941 -33.17415 -31.94535 -30.77535 -27.81974 -26.16795 -24.45551 -23.75960 -21.91750 -20.54512 -20.06030 -18.72915 -17.97757 -17.05819 -16.30149 -16.13880 -14.78576 -14.61998 -14.53790 -14.35479 -13.94134 -13.62876 -12.66327 -12.62021 -12.15122 -11.97160 -11.85179 -11.53204 -11.14555 -11.02444 -10.92344 -10.86553 -10.64165 -10.38621 -9.90626 -9.87353 -9.47281 -9.18867 -8.86948 -8.40208 -6.05749 -4.08416 0.11633 1.00296 1.11486 1.41613 1.71152 2.73288 2.89395 3.31310 3.35905 3.38454 3.48084 3.84416 4.32478 4.42329 4.79649 5.02865 5.17492 5.30616 5.41729 5.42916 5.57007 5.63831 5.90279 6.02328 6.17795 6.43885 6.58391 6.90492 7.57177 7.68611 7.92481 8.13657 8.33764 8.97580 9.56202 11.05468 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.037567 B = 0.003159 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.156951 B = 8860.794826 C = 9176.694459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.107 4.107 11 C -0.034 4.034 12 C 0.215 3.785 13 N -0.483 5.483 14 C 0.229 3.771 15 C -0.091 4.091 16 C 0.129 3.871 17 N -0.458 5.458 18 S 0.285 5.715 19 C -0.172 4.172 20 N -0.383 5.383 21 O 0.079 5.921 22 H 0.262 0.738 23 H 0.021 0.979 24 H 0.021 0.979 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.101 0.899 28 H 0.110 0.890 29 H 0.198 0.802 30 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.959 -19.432 1.235 21.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.146 4.146 11 C -0.073 4.073 12 C -0.004 4.004 13 N -0.217 5.217 14 C -0.044 4.044 15 C -0.110 4.110 16 C -0.070 4.070 17 N -0.276 5.276 18 S 0.437 5.563 19 C -0.323 4.323 20 N -0.091 5.091 21 O 0.020 5.980 22 H 0.072 0.928 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.077 0.923 26 H 0.075 0.925 27 H 0.120 0.880 28 H 0.128 0.872 29 H 0.215 0.785 30 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 9.484 -21.294 2.471 23.442 hybrid contribution -0.710 2.348 -1.118 2.696 sum 8.775 -18.946 1.352 20.923 Atomic orbital electron populations 1.69943 1.06030 1.26868 1.50519 1.25000 0.94861 0.99274 0.95171 0.86646 0.79594 0.83036 0.78677 1.20215 1.21252 1.20207 1.21157 0.93054 0.90910 1.51095 0.92674 1.19100 0.93751 0.90742 0.97772 1.21756 0.99614 0.91586 1.01635 1.20721 0.93386 0.87381 1.05858 1.29319 0.95645 0.95837 0.79615 1.72039 1.12257 1.08592 1.28776 1.22992 0.97796 0.96157 0.87449 1.17666 1.02411 0.98809 0.92157 1.22871 0.96125 0.96478 0.91572 1.76762 1.15174 1.11712 1.23978 1.84101 1.44528 1.36867 0.90806 1.26852 0.99527 0.98985 1.06976 1.74858 1.11701 1.08084 1.14507 1.85286 1.42601 1.34150 1.36004 0.92841 0.96039 0.96049 0.92266 0.92482 0.88032 0.87205 0.78528 0.79055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.52 -14.20 9.11 -34.44 -0.31 -14.51 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.42 16 10 C -0.11 -1.97 5.14 -26.73 -0.14 -2.11 16 11 C -0.03 -0.50 5.84 -27.89 -0.16 -0.66 16 12 C 0.22 3.18 7.75 -12.98 -0.10 3.08 16 13 N -0.48 -7.39 11.49 -9.87 -0.11 -7.50 16 14 C 0.23 3.30 7.89 -156.09 -1.23 2.07 16 15 C -0.09 -1.09 5.83 -106.21 -0.62 -1.71 16 16 C 0.13 1.47 11.05 -18.19 -0.20 1.27 16 17 N -0.46 -5.23 12.05 29.18 0.35 -4.88 16 18 S 0.28 2.49 23.70 -107.50 -2.55 -0.06 16 19 C -0.17 -1.65 11.17 30.05 0.34 -1.32 16 20 N -0.38 -5.71 12.09 30.98 0.37 -5.33 16 21 O 0.08 1.17 11.29 18.03 0.20 1.38 16 22 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 23 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.20 2.06 8.06 -52.49 -0.42 1.64 16 30 H 0.19 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 289.99 15.07 4.37 4.37 Total: -1.00 -30.17 289.99 -7.24 -37.41 By element: Atomic # 1 Polarization: -1.44 SS G_CDS: -2.92 Total: -4.37 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -2.67 Total: -11.95 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 1.35 Total: -42.91 kcal Atomic # 8 Polarization: 1.17 SS G_CDS: 0.20 Total: 1.38 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.55 Total: -0.06 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.17 -7.24 -37.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924151066.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.163 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds