Wall clock time and date at job start Mon Mar 30 2020 06:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00379 * 2 1 4 4 H 1.48500 * 109.47209 * 239.99784 * 3 2 1 5 5 H 1.48501 * 109.47139 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47324 * 119.99513 * 3 2 1 7 7 C 1.37875 * 119.99688 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00126 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99933 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47152 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47300 * 180.02562 * 10 9 7 12 12 C 1.50692 * 109.47097 * 179.97438 * 11 10 9 13 13 N 1.30976 * 126.43111 * 90.00199 * 12 11 10 14 14 C 1.35248 * 105.58030 * 180.02562 * 13 12 11 15 15 C 1.48311 * 126.42087 * 179.97438 * 14 13 12 16 16 C 1.38855 * 122.86276 * 359.73327 * 15 14 13 17 17 N 1.29784 * 116.83547 * 179.81152 * 16 15 14 18 18 S 1.69540 * 107.50380 * 0.42346 * 17 16 15 19 19 C 1.36343 * 122.86250 * 180.02562 * 15 14 13 20 20 N 1.30824 * 107.15770 * 359.97438 * 14 13 12 21 21 O 1.21293 * 110.08772 * 359.97438 * 20 14 13 22 22 H 0.97002 * 119.99336 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46993 * 60.00416 * 9 7 2 24 24 H 1.08997 * 109.47599 * 299.99921 * 9 7 2 25 25 H 1.08997 * 109.47323 * 59.99914 * 10 9 7 26 26 H 1.09006 * 109.46578 * 300.00014 * 10 9 7 27 27 H 1.09004 * 109.47069 * 60.00019 * 11 10 9 28 28 H 1.08998 * 109.47174 * 300.00127 * 11 10 9 29 29 H 1.07996 * 121.58188 * 0.03486 * 16 15 14 30 30 H 1.08001 * 127.25624 * 359.96548 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2844 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4991 0.0017 10 6 2.2451 -3.6622 0.0027 11 6 1.4801 -4.9872 0.0033 12 6 2.4593 -6.1326 0.0037 13 7 2.9647 -6.7234 1.0577 14 6 3.7864 -7.6839 0.5766 15 6 4.5977 -8.6314 1.3788 16 6 4.6042 -8.6298 2.7673 17 7 5.3547 -9.5133 3.3508 18 16 6.1234 -10.4117 2.1358 19 6 5.4053 -9.5747 0.8157 20 7 3.7314 -7.6205 -0.7289 21 8 2.9744 -6.7369 -1.0716 22 1 -0.4849 0.8401 -0.0004 23 1 0.6239 -2.5575 -0.8881 24 1 0.6246 -2.5563 0.8919 25 1 2.8718 -3.6037 0.8926 26 1 2.8717 -3.6052 -0.8874 27 1 0.8537 -5.0454 -0.8869 28 1 0.8531 -5.0443 0.8931 29 1 4.0100 -7.9289 3.3348 30 1 5.5613 -9.7576 -0.2373 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924151066.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:24 Heat of formation + Delta-G solvation = 72.546865 kcal Electronic energy + Delta-G solvation = -16368.103896 eV Core-core repulsion = 13485.236996 eV Total energy + Delta-G solvation = -2882.866900 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 265.063 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -46.60990 -40.12775 -37.21955 -36.44495 -34.82814 -33.31742 -31.90882 -29.44968 -27.08178 -25.99677 -25.03743 -23.11630 -22.09712 -21.02858 -19.62537 -19.12560 -18.50624 -17.88403 -17.07821 -16.53909 -16.02652 -15.56214 -15.46262 -14.96584 -14.52609 -14.34234 -14.04062 -13.73753 -13.13930 -13.10432 -12.71062 -12.64811 -12.58855 -12.46989 -12.22838 -11.75469 -11.64452 -11.52774 -11.34320 -11.10165 -10.71888 -10.49817 -9.70637 -8.16635 -6.25871 -0.70720 0.03561 0.24040 0.63324 0.69561 1.43741 1.45108 1.52950 1.73005 1.75307 2.43775 2.48228 2.79040 3.17685 3.53194 3.86746 4.01406 4.22675 4.23856 4.32433 4.52227 4.60097 4.73986 4.79998 5.00630 5.05848 5.22466 5.34167 5.56082 5.78863 5.90153 6.28961 6.90568 7.01319 7.42811 8.94514 Molecular weight = 265.06amu Principal moments of inertia in cm(-1) A = 0.037567 B = 0.003159 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.156951 B = 8860.794826 C = 9176.694459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.545 4.545 8 H 0.056 0.944 9 C 0.026 3.974 10 C -0.093 4.093 11 C -0.023 4.023 12 C 0.217 3.783 13 N -0.497 5.497 14 C 0.231 3.769 15 C -0.122 4.122 16 C 0.128 3.872 17 N -0.488 5.488 18 S 0.346 5.654 19 C -0.160 4.160 20 N -0.393 5.393 21 O 0.074 5.926 22 H 0.263 0.737 23 H 0.008 0.992 24 H 0.004 0.996 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.122 0.878 28 H 0.119 0.881 29 H 0.198 0.802 30 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.267 -20.364 1.054 22.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.583 4.583 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.132 4.132 11 C -0.062 4.062 12 C -0.003 4.003 13 N -0.231 5.231 14 C -0.041 4.041 15 C -0.142 4.142 16 C -0.071 4.071 17 N -0.308 5.308 18 S 0.498 5.502 19 C -0.311 4.311 20 N -0.103 5.103 21 O 0.017 5.983 22 H 0.072 0.928 23 H 0.027 0.973 24 H 0.022 0.978 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.141 0.859 28 H 0.137 0.863 29 H 0.214 0.786 30 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 10.796 -22.229 2.281 24.817 hybrid contribution -1.036 2.508 -1.049 2.909 sum 9.760 -19.721 1.232 22.038 Atomic orbital electron populations 1.70056 1.07482 1.27760 1.51623 1.25852 0.95719 1.02927 0.94915 0.85624 0.78393 0.78771 0.79013 1.19361 1.20900 1.19538 1.21661 0.93485 0.92617 1.50545 0.92582 1.18990 0.94208 0.91784 0.96172 1.21443 0.98464 0.91916 1.01330 1.20536 0.92967 0.85192 1.07486 1.29207 0.95523 0.95910 0.79674 1.72044 1.12732 1.09134 1.29158 1.23355 0.97343 0.95944 0.87477 1.17753 1.04061 1.00000 0.92359 1.22827 0.96211 0.96593 0.91431 1.76631 1.15951 1.12447 1.25723 1.83925 1.42450 1.34785 0.89009 1.27190 0.97923 0.97676 1.08352 1.74834 1.12204 1.08501 1.14761 1.85268 1.42755 1.34318 1.35976 0.92771 0.97345 0.97796 0.92992 0.92350 0.85936 0.86268 0.78575 0.77239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.38 13.29 21.45 0.28 -54.10 16 2 C 0.00 0.22 5.46 84.65 0.46 0.69 16 3 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 4 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.54 -29.68 9.11 25.60 0.23 -29.44 16 8 H 0.06 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.03 1.23 4.97 29.85 0.15 1.37 16 10 C -0.09 -3.39 5.14 30.60 0.16 -3.23 16 11 C -0.02 -0.64 5.84 29.84 0.17 -0.47 16 12 C 0.22 6.19 7.75 88.35 0.68 6.87 16 13 N -0.50 -14.85 11.49 -302.40 -3.48 -18.32 16 14 C 0.23 6.47 7.89 137.24 1.08 7.55 16 15 C -0.12 -2.78 5.83 -20.89 -0.12 -2.91 16 16 C 0.13 2.82 11.05 85.14 0.94 3.76 16 17 N -0.49 -10.49 12.05 -61.58 -0.74 -11.23 16 18 S 0.35 5.22 23.70 -56.49 -1.34 3.88 16 19 C -0.16 -2.73 11.17 67.38 0.75 -1.97 16 20 N -0.39 -11.28 12.09 -59.01 -0.71 -11.99 16 21 O 0.07 2.13 11.29 74.58 0.84 2.97 16 22 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 23 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 24 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 25 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 27 H 0.12 2.90 8.14 -2.38 -0.02 2.88 16 28 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 29 H 0.20 4.10 8.06 -2.91 -0.02 4.08 16 30 H 0.21 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -63.81 289.99 2.56 -61.25 By element: Atomic # 1 Polarization: -1.10 SS G_CDS: 1.16 Total: 0.07 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 4.51 Total: -17.77 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -4.65 Total: -95.65 kcal Atomic # 8 Polarization: 2.13 SS G_CDS: 0.84 Total: 2.97 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 16 Polarization: 5.22 SS G_CDS: -1.34 Total: 3.88 kcal Total: -63.81 2.56 -61.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924151066.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.796 kcal (2) G-P(sol) polarization free energy of solvation -63.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds