Wall clock time and date at job start Mon Mar 30 2020 06:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.81398 * 103.00477 * 2 1 4 4 C 1.52997 * 109.47345 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.47073 * 180.02562 * 4 3 2 6 6 O 1.21283 * 120.00309 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99819 * 179.97438 * 5 4 3 8 8 C 1.39240 * 119.99927 * 184.29010 * 7 5 4 9 9 C 1.39485 * 119.83191 * 324.71145 * 8 7 5 10 10 C 1.36379 * 120.16599 * 180.29621 * 9 8 7 11 11 C 1.40872 * 119.82534 * 359.48138 * 10 9 8 12 12 C 1.41158 * 120.15780 * 180.24903 * 11 10 9 13 13 H 1.07996 * 119.99825 * 215.01441 * 12 11 10 14 14 C 1.39903 * 119.99973 * 35.01649 * 12 11 10 15 15 N 1.30872 * 120.00156 * 355.53855 * 14 12 11 16 16 Si 1.86802 * 119.99786 * 175.54508 * 14 12 11 17 17 H 1.48499 * 109.47487 * 89.99792 * 16 14 12 18 18 H 1.48503 * 109.47035 * 209.99395 * 16 14 12 19 19 H 1.48494 * 109.47160 * 329.99636 * 16 14 12 20 20 C 1.40862 * 119.67476 * 0.51091 * 11 10 9 21 21 C 1.36370 * 119.83113 * 359.73946 * 20 11 10 22 22 H 1.08997 * 109.46882 * 59.99767 * 1 2 3 23 23 H 1.08992 * 109.47451 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46963 * 300.00304 * 1 2 3 25 25 H 1.09000 * 109.46986 * 60.00022 * 3 2 1 26 26 H 1.09007 * 109.46947 * 300.00132 * 3 2 1 27 27 H 1.09000 * 109.47469 * 59.99817 * 4 3 2 28 28 H 1.09000 * 109.46922 * 299.99314 * 4 3 2 29 29 H 0.97001 * 120.00327 * 4.28602 * 7 5 4 30 30 H 1.07999 * 119.91636 * 0.02562 * 9 8 7 31 31 H 1.07998 * 120.08174 * 179.69224 * 10 9 8 32 32 H 0.97001 * 119.99528 * 180.02562 * 15 14 12 33 33 H 1.08004 * 120.08345 * 179.71548 * 20 11 10 34 34 H 1.08000 * 119.91774 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 6 3.7424 1.9398 -0.0006 5 6 4.0814 3.4082 0.0000 6 8 3.1945 4.2354 0.0004 7 7 5.3704 3.8022 0.0001 8 6 5.6846 5.1556 0.0909 9 6 4.8640 6.1012 -0.5238 10 6 5.1687 7.4282 -0.4443 11 6 6.3096 7.8435 0.2701 12 6 6.6287 9.2155 0.3613 13 1 7.6617 9.5302 0.3695 14 6 5.6066 10.1676 0.4411 15 7 4.3559 9.7948 0.3434 16 14 6.0273 11.9709 0.6869 17 1 6.1946 12.6251 -0.6357 18 1 4.9304 12.6377 1.4336 19 1 7.2911 12.0837 1.4583 20 6 7.1334 6.8826 0.8883 21 6 6.8187 5.5589 0.7958 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8033 2.2371 0.8900 26 1 1.8032 2.2371 -0.8900 27 1 4.1610 1.4703 -0.8908 28 1 4.1616 1.4702 0.8892 29 1 6.0791 3.1429 -0.0630 30 1 3.9875 5.7815 -1.0678 31 1 4.5351 8.1588 -0.9250 32 1 3.6474 10.4550 0.3983 33 1 8.0122 7.1933 1.4338 34 1 7.4496 4.8209 1.2689 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000028438741.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:09 Heat of formation + Delta-G solvation = -24.538201 kcal Electronic energy + Delta-G solvation = -16875.604847 eV Core-core repulsion = 14092.068367 eV Total energy + Delta-G solvation = -2783.536481 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.72190 -37.33166 -34.49397 -33.08034 -32.66610 -29.52498 -29.22318 -28.92567 -25.65445 -23.89773 -21.42147 -20.83838 -19.52675 -17.29703 -17.14479 -16.56631 -15.80349 -15.77068 -15.13090 -14.20334 -14.12805 -13.93353 -13.82328 -13.43093 -12.92932 -12.71129 -12.51676 -12.21052 -11.91169 -11.78290 -11.46557 -11.43771 -11.16138 -10.92451 -10.50884 -10.20599 -9.95303 -9.88761 -9.48054 -9.01723 -8.75724 -7.88989 -7.53554 -6.90045 -6.59979 -4.33885 1.44979 2.37935 2.55357 2.99180 3.08399 3.10339 3.14191 3.32939 3.76768 3.98600 4.64947 4.71521 4.86366 4.91980 4.92717 5.12255 5.43539 5.48600 5.60698 5.66744 5.79670 6.12667 6.37603 6.77746 6.98208 7.03819 7.19305 7.28888 7.62543 7.66153 7.96218 8.08758 8.17520 8.32835 8.66045 8.73496 8.92925 9.00482 10.31028 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.040813 B = 0.003480 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.899312 B = 8044.874806 C = 8612.724024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.275 6.275 3 C -0.064 4.064 4 C -0.123 4.123 5 C 0.502 3.498 6 O -0.529 6.529 7 N -0.652 5.652 8 C 0.003 3.997 9 C -0.093 4.093 10 C -0.145 4.145 11 C 0.100 3.900 12 C -0.463 4.463 13 H 0.076 0.924 14 C 0.069 3.931 15 N -0.808 5.808 16 Si 0.915 3.085 17 H -0.270 1.270 18 H -0.278 1.278 19 H -0.263 1.263 20 C -0.204 4.204 21 C -0.113 4.113 22 H 0.077 0.923 23 H 0.100 0.900 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.396 0.604 30 H 0.107 0.893 31 H 0.130 0.870 32 H 0.278 0.722 33 H 0.097 0.903 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.228 -14.118 -0.980 14.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.049 6.049 3 C -0.213 4.213 4 C -0.164 4.164 5 C 0.287 3.713 6 O -0.405 6.405 7 N -0.295 5.295 8 C -0.089 4.089 9 C -0.113 4.113 10 C -0.165 4.165 11 C 0.098 3.902 12 C -0.494 4.494 13 H 0.094 0.906 14 C -0.147 4.147 15 N -0.435 5.435 16 Si 0.740 3.260 17 H -0.195 1.195 18 H -0.203 1.203 19 H -0.188 1.188 20 C -0.224 4.224 21 C -0.133 4.133 22 H 0.096 0.904 23 H 0.118 0.882 24 H 0.096 0.904 25 H 0.109 0.891 26 H 0.109 0.891 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.229 0.771 30 H 0.125 0.875 31 H 0.148 0.852 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.470 -14.319 -0.959 14.764 hybrid contribution -0.400 1.460 0.266 1.537 sum -3.870 -12.859 -0.693 13.446 Atomic orbital electron populations 1.23350 0.93735 1.06324 1.05221 1.86680 1.07970 1.12101 1.98183 1.23101 0.98555 0.92868 1.06737 1.21336 0.95122 0.94717 1.05255 1.20383 0.83143 0.90259 0.77511 1.90721 1.46860 1.54120 1.48834 1.42972 1.06893 1.07502 1.72085 1.17298 1.00799 0.81481 1.09357 1.20641 0.98307 0.93243 0.99139 1.21307 1.00218 0.93685 1.01246 1.17732 0.91182 0.92959 0.88359 1.19482 0.93967 0.90898 1.45024 0.90629 1.25897 0.94608 1.01240 0.92911 1.69791 1.00063 1.35924 1.37675 0.86201 0.79110 0.81567 0.79104 1.19520 1.20305 1.18759 1.20696 1.03282 0.92271 1.06174 1.20080 0.97229 0.95935 1.00044 0.90357 0.88163 0.90354 0.89105 0.89130 0.88303 0.88245 0.77056 0.87504 0.85217 0.91081 0.88502 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 10.76 101.05 1.09 0.14 16 2 S -0.27 -2.94 22.38 -107.50 -2.41 -5.35 16 3 C -0.06 -0.77 5.23 37.16 0.19 -0.58 16 4 C -0.12 -1.45 5.71 -27.88 -0.16 -1.61 16 5 C 0.50 8.49 7.66 -10.98 -0.08 8.40 16 6 O -0.53 -11.32 13.40 5.55 0.07 -11.25 16 7 N -0.65 -11.12 5.30 -9.73 -0.05 -11.17 16 8 C 0.00 0.06 6.31 -83.57 -0.53 -0.46 16 9 C -0.09 -2.32 8.61 -39.79 -0.34 -2.66 16 10 C -0.14 -3.88 8.61 -39.26 -0.34 -4.22 16 11 C 0.10 2.69 5.55 -106.80 -0.59 2.10 16 12 C -0.46 -12.37 9.02 -37.85 -0.34 -12.71 16 13 H 0.08 1.92 7.85 -52.49 -0.41 1.51 16 14 C 0.07 1.77 5.42 -17.34 -0.09 1.67 16 15 N -0.81 -21.59 10.61 55.55 0.59 -21.00 16 16 Si 0.92 19.14 29.56 -169.99 -5.03 14.11 16 17 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 18 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 19 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 20 C -0.20 -4.93 9.74 -39.26 -0.38 -5.31 16 21 C -0.11 -2.45 9.90 -39.79 -0.39 -2.84 16 22 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 25 H 0.09 1.17 8.10 -51.92 -0.42 0.75 16 26 H 0.09 1.14 8.10 -51.92 -0.42 0.72 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 29 H 0.40 5.12 8.82 -40.82 -0.36 4.76 16 30 H 0.11 2.66 6.22 -52.49 -0.33 2.33 16 31 H 0.13 3.65 6.15 -52.49 -0.32 3.33 16 32 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 33 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 34 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 305.45 15.07 4.60 4.60 Total: -1.00 -30.46 305.45 -8.55 -39.01 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -4.36 Total: 9.13 kcal Atomic # 6 Polarization: -16.11 SS G_CDS: -1.97 Total: -18.08 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.54 Total: -32.18 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.07 Total: -11.25 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Atomic # 16 Polarization: -2.94 SS G_CDS: -2.41 Total: -5.35 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.46 -8.55 -39.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000028438741.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.469 kcal (2) G-P(sol) polarization free energy of solvation -30.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds