Wall clock time and date at job start Mon Mar 30 2020 06:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86803 * 119.99909 * 2 1 4 4 H 1.48506 * 109.47116 * 270.00200 * 3 2 1 5 5 H 1.48501 * 109.47070 * 30.00020 * 3 2 1 6 6 H 1.48493 * 109.47383 * 150.00001 * 3 2 1 7 7 C 1.39921 * 120.00286 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99758 * 162.53754 * 7 2 1 9 9 C 1.41037 * 119.99703 * 342.81828 * 7 2 1 10 10 C 1.40721 * 120.30011 * 334.83499 * 9 7 2 11 11 C 1.36541 * 119.93819 * 179.76412 * 10 9 7 12 12 Cl 1.73597 * 119.71185 * 180.27758 * 11 10 9 13 13 C 1.39005 * 120.57453 * 0.52108 * 11 10 9 14 14 C 1.38159 * 120.61385 * 359.73302 * 13 11 10 15 15 C 1.38746 * 120.03729 * 0.02562 * 14 13 11 16 16 N 1.38763 * 120.28646 * 179.97438 * 15 14 13 17 17 C 1.46851 * 110.99973 * 64.22687 * 16 15 14 18 18 C 1.53044 * 109.52247 * 174.16051 * 17 16 15 19 19 C 1.53123 * 109.27539 * 59.18358 * 18 17 16 20 20 C 1.53125 * 109.15919 * 302.34390 * 19 18 17 21 21 C 1.46849 * 110.99949 * 300.02159 * 16 15 14 22 22 H 0.96996 * 119.99659 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.03087 * 0.02959 * 10 9 7 24 24 H 1.08001 * 119.69623 * 179.75782 * 13 11 10 25 25 H 1.08005 * 119.98141 * 179.97438 * 14 13 11 26 26 H 1.08993 * 109.46180 * 294.17777 * 17 16 15 27 27 H 1.08999 * 109.45902 * 54.14796 * 17 16 15 28 28 H 1.08992 * 109.50418 * 299.24002 * 18 17 16 29 29 H 1.08994 * 109.53423 * 179.13755 * 18 17 16 30 30 H 1.09000 * 109.52358 * 182.44203 * 19 18 17 31 31 H 1.08996 * 109.57517 * 62.27939 * 19 18 17 32 32 H 1.08997 * 109.50185 * 297.71423 * 20 19 18 33 33 H 1.09003 * 109.53414 * 177.61674 * 20 19 18 34 34 H 1.09002 * 109.45691 * 305.85483 * 21 16 15 35 35 H 1.09002 * 109.46223 * 65.82910 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5404 1.4403 0.7000 7 6 2.0085 -1.2117 0.0005 8 1 3.0512 -1.2333 -0.2801 9 6 1.3506 -2.4057 0.3619 10 6 0.2204 -2.3681 1.1995 11 6 -0.4138 -3.5281 1.5408 12 17 -1.8118 -3.4742 2.5686 13 6 0.0532 -4.7522 1.0765 14 6 1.1638 -4.8167 0.2572 15 6 1.8248 -3.6533 -0.1095 16 7 2.9411 -3.7121 -0.9317 17 6 2.5892 -4.2284 -2.2607 18 6 3.8084 -4.1429 -3.1819 19 6 4.9537 -4.9633 -2.5819 20 6 5.2681 -4.4364 -1.1789 21 6 4.0066 -4.5133 -0.3159 22 1 -0.4849 0.8400 -0.0004 23 1 -0.1475 -1.4221 1.5686 24 1 -0.4570 -5.6614 1.3584 25 1 1.5181 -5.7734 -0.0974 26 1 2.2715 -5.2674 -2.1742 27 1 1.7765 -3.6337 -2.6778 28 1 4.1183 -3.1026 -3.2798 29 1 3.5518 -4.5402 -4.1638 30 1 5.8379 -4.8701 -3.2125 31 1 4.6592 -6.0109 -2.5200 32 1 5.6010 -3.4006 -1.2454 33 1 6.0542 -5.0431 -0.7294 34 1 4.2234 -4.1255 0.6795 35 1 3.6823 -5.5510 -0.2387 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034521847.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:23 Heat of formation + Delta-G solvation = 2.061177 kcal Electronic energy + Delta-G solvation = -18121.325204 eV Core-core repulsion = 15336.898452 eV Total energy + Delta-G solvation = -2784.426752 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.12572 -36.99933 -35.35080 -33.76577 -32.67693 -30.33808 -29.79036 -27.99858 -25.35871 -23.50096 -22.51135 -21.35567 -20.12388 -18.97884 -17.43586 -16.11634 -15.39290 -14.62474 -14.33510 -14.22989 -14.11958 -13.41064 -12.99714 -12.96032 -12.77174 -12.37968 -12.08830 -11.73669 -11.56978 -11.28531 -11.13089 -10.78751 -10.76927 -10.48797 -10.30998 -10.27032 -10.15778 -9.89934 -9.68517 -9.64419 -9.20621 -7.58301 -7.43309 -7.30297 -6.82548 -4.39583 2.57096 2.75392 3.06014 3.09026 3.16762 3.33947 3.89562 4.48132 4.74327 5.21223 5.25052 5.28834 5.45785 5.71512 5.87963 5.95169 5.96930 6.07263 6.13961 6.24091 6.26092 6.36607 6.44506 6.51271 6.58496 6.70978 6.87861 7.00629 7.14083 7.27391 7.50993 7.65469 7.80452 7.90814 8.08977 8.33539 8.61256 8.77536 8.99604 10.08554 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.013307 B = 0.009025 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.643421 B = 3101.666979 C = 4808.075422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.070 3.930 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.259 1.259 7 C -0.419 4.419 8 H 0.094 0.906 9 C 0.139 3.861 10 C -0.153 4.153 11 C 0.000 4.000 12 Cl -0.128 7.128 13 C -0.240 4.240 14 C -0.100 4.100 15 C -0.040 4.040 16 N -0.467 5.467 17 C 0.067 3.933 18 C -0.117 4.117 19 C -0.118 4.118 20 C -0.116 4.116 21 C 0.063 3.937 22 H 0.283 0.717 23 H 0.131 0.869 24 H 0.095 0.905 25 H 0.091 0.909 26 H 0.021 0.979 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.269 -4.324 -2.308 7.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.149 4.149 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.183 1.183 7 C -0.447 4.447 8 H 0.112 0.888 9 C 0.134 3.866 10 C -0.174 4.174 11 C -0.027 4.027 12 Cl -0.100 7.100 13 C -0.261 4.261 14 C -0.121 4.121 15 C -0.135 4.135 16 N -0.188 5.188 17 C -0.060 4.060 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.154 4.154 21 C -0.065 4.065 22 H 0.094 0.906 23 H 0.148 0.852 24 H 0.113 0.887 25 H 0.109 0.891 26 H 0.039 0.961 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 5.133 -3.666 -2.308 6.717 hybrid contribution -0.279 -0.176 0.150 0.363 sum 4.854 -3.843 -2.158 6.556 Atomic orbital electron populations 1.69847 1.07676 1.29642 1.33776 1.26083 0.94746 1.01739 0.92312 0.86273 0.80685 0.80310 0.79316 1.19411 1.20177 1.18278 1.19571 0.98652 0.89933 1.36544 0.88842 1.17298 0.89672 0.91566 0.88035 1.20999 0.99000 0.96104 1.01270 1.20443 0.89523 0.95718 0.96965 1.98253 1.44143 1.99008 1.68605 1.19971 1.02136 0.94779 1.09212 1.20913 0.95966 0.96794 0.98409 1.18477 0.97315 0.92857 1.04871 1.58787 1.07736 1.50960 1.01273 1.22033 0.96897 0.97110 0.89995 1.21601 0.95451 1.00886 0.97500 1.21548 0.98226 0.99066 0.96686 1.21597 0.97025 1.01625 0.95161 1.22078 0.91683 0.94887 0.97818 0.90603 0.85151 0.88678 0.89053 0.96064 0.90926 0.91119 0.92439 0.92586 0.92843 0.91179 0.92456 0.91197 0.95958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.57 10.96 55.55 0.61 -18.96 16 2 C 0.07 1.69 5.15 -17.32 -0.09 1.60 16 3 Si 0.91 18.17 29.59 -169.99 -5.03 13.14 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 6 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 7 C -0.42 -10.54 8.69 -37.89 -0.33 -10.87 16 8 H 0.09 2.33 7.59 -52.49 -0.40 1.93 16 9 C 0.14 3.51 5.58 -106.64 -0.60 2.92 16 10 C -0.15 -3.88 8.39 -39.26 -0.33 -4.21 16 11 C 0.00 -0.01 6.27 -39.91 -0.25 -0.26 16 12 Cl -0.13 -2.66 28.93 -51.86 -1.50 -4.16 16 13 C -0.24 -5.37 9.81 -39.33 -0.39 -5.75 16 14 C -0.10 -2.20 8.68 -39.42 -0.34 -2.54 16 15 C -0.04 -0.92 4.69 -83.28 -0.39 -1.31 16 16 N -0.47 -9.47 3.81 -170.63 -0.65 -10.12 16 17 C 0.07 1.21 5.16 -3.83 -0.02 1.19 16 18 C -0.12 -1.72 6.09 -26.64 -0.16 -1.88 16 19 C -0.12 -1.56 6.00 -26.60 -0.16 -1.72 16 20 C -0.12 -1.67 6.09 -26.65 -0.16 -1.83 16 21 C 0.06 1.09 5.11 -3.83 -0.02 1.08 16 22 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 23 H 0.13 3.44 6.18 -52.49 -0.32 3.11 16 24 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 25 H 0.09 1.82 7.12 -52.48 -0.37 1.44 16 26 H 0.02 0.38 7.55 -51.93 -0.39 -0.01 16 27 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 1.28 8.10 -51.93 -0.42 0.86 16 35 H 0.02 0.38 7.32 -51.93 -0.38 0.00 16 LS Contribution 297.50 15.07 4.48 4.48 Total: -1.00 -25.38 297.50 -10.13 -35.51 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -4.80 Total: 3.69 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -3.24 Total: -23.58 kcal Atomic # 7 Polarization: -29.04 SS G_CDS: -0.04 Total: -29.08 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Atomic # 17 Polarization: -2.66 SS G_CDS: -1.50 Total: -4.16 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -25.38 -10.13 -35.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034521847.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.571 kcal (2) G-P(sol) polarization free energy of solvation -25.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds