Wall clock time and date at job start Mon Mar 30 2020 06:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86803 * 119.99909 * 2 1 4 4 H 1.48506 * 109.47116 * 270.00200 * 3 2 1 5 5 H 1.48501 * 109.47070 * 30.00020 * 3 2 1 6 6 H 1.48493 * 109.47383 * 150.00001 * 3 2 1 7 7 C 1.39921 * 120.00286 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99758 * 162.53754 * 7 2 1 9 9 C 1.41037 * 119.99703 * 342.81828 * 7 2 1 10 10 C 1.40721 * 120.30011 * 334.83499 * 9 7 2 11 11 C 1.36541 * 119.93819 * 179.76412 * 10 9 7 12 12 Cl 1.73597 * 119.71185 * 180.27758 * 11 10 9 13 13 C 1.39005 * 120.57453 * 0.52108 * 11 10 9 14 14 C 1.38159 * 120.61385 * 359.73302 * 13 11 10 15 15 C 1.38746 * 120.03729 * 0.02562 * 14 13 11 16 16 N 1.38763 * 120.28646 * 179.97438 * 15 14 13 17 17 C 1.46851 * 110.99973 * 64.22687 * 16 15 14 18 18 C 1.53044 * 109.52247 * 174.16051 * 17 16 15 19 19 C 1.53123 * 109.27539 * 59.18358 * 18 17 16 20 20 C 1.53125 * 109.15919 * 302.34390 * 19 18 17 21 21 C 1.46849 * 110.99949 * 300.02159 * 16 15 14 22 22 H 0.96996 * 119.99659 * 0.02562 * 1 2 3 23 23 H 1.08000 * 120.03087 * 0.02959 * 10 9 7 24 24 H 1.08001 * 119.69623 * 179.75782 * 13 11 10 25 25 H 1.08005 * 119.98141 * 179.97438 * 14 13 11 26 26 H 1.08993 * 109.46180 * 294.17777 * 17 16 15 27 27 H 1.08999 * 109.45902 * 54.14796 * 17 16 15 28 28 H 1.08992 * 109.50418 * 299.24002 * 18 17 16 29 29 H 1.08994 * 109.53423 * 179.13755 * 18 17 16 30 30 H 1.09000 * 109.52358 * 182.44203 * 19 18 17 31 31 H 1.08996 * 109.57517 * 62.27939 * 19 18 17 32 32 H 1.08997 * 109.50185 * 297.71423 * 20 19 18 33 33 H 1.09003 * 109.53414 * 177.61674 * 20 19 18 34 34 H 1.09002 * 109.45691 * 305.85483 * 21 16 15 35 35 H 1.09002 * 109.46223 * 65.82910 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4403 2.6527 0.7000 6 1 3.5404 1.4403 0.7000 7 6 2.0085 -1.2117 0.0005 8 1 3.0512 -1.2333 -0.2801 9 6 1.3506 -2.4057 0.3619 10 6 0.2204 -2.3681 1.1995 11 6 -0.4138 -3.5281 1.5408 12 17 -1.8118 -3.4742 2.5686 13 6 0.0532 -4.7522 1.0765 14 6 1.1638 -4.8167 0.2572 15 6 1.8248 -3.6533 -0.1095 16 7 2.9411 -3.7121 -0.9317 17 6 2.5892 -4.2284 -2.2607 18 6 3.8084 -4.1429 -3.1819 19 6 4.9537 -4.9633 -2.5819 20 6 5.2681 -4.4364 -1.1789 21 6 4.0066 -4.5133 -0.3159 22 1 -0.4849 0.8400 -0.0004 23 1 -0.1475 -1.4221 1.5686 24 1 -0.4570 -5.6614 1.3584 25 1 1.5181 -5.7734 -0.0974 26 1 2.2715 -5.2674 -2.1742 27 1 1.7765 -3.6337 -2.6778 28 1 4.1183 -3.1026 -3.2798 29 1 3.5518 -4.5402 -4.1638 30 1 5.8379 -4.8701 -3.2125 31 1 4.6592 -6.0109 -2.5200 32 1 5.6010 -3.4006 -1.2454 33 1 6.0542 -5.0431 -0.7294 34 1 4.2234 -4.1255 0.6795 35 1 3.6823 -5.5510 -0.2387 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034521847.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:23 Heat of formation + Delta-G solvation = -9.028592 kcal Electronic energy + Delta-G solvation = -18121.806093 eV Core-core repulsion = 15336.898452 eV Total energy + Delta-G solvation = -2784.907640 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.70646 -38.60852 -37.07414 -35.54687 -34.14426 -31.64462 -31.61695 -29.70181 -27.14889 -24.97217 -23.81226 -23.12123 -21.77167 -20.33459 -19.26713 -17.75721 -17.11586 -16.30366 -15.95760 -15.75718 -15.37984 -14.91568 -14.50260 -14.42808 -14.33213 -13.86069 -13.79261 -13.28350 -13.07079 -13.02759 -12.76434 -12.45261 -12.08466 -12.04472 -11.94586 -11.78667 -11.53726 -11.42344 -11.23607 -11.08965 -10.99847 -9.44003 -9.10433 -8.99248 -8.61376 -6.28609 0.76485 0.94742 1.40898 1.49203 1.54169 1.56348 2.22263 2.66803 3.27328 3.59191 4.01304 4.08700 4.13678 4.30599 4.42942 4.54542 4.56404 4.70673 4.74076 4.92909 5.03401 5.05658 5.10596 5.13997 5.18346 5.29499 5.31623 5.34088 5.45492 5.56497 5.71059 5.86581 5.94512 6.25336 6.45966 6.48067 6.78373 6.92302 7.21415 8.30755 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.013307 B = 0.009025 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.643421 B = 3101.666979 C = 4808.075422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.033 3.967 3 Si 0.978 3.022 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.445 4.445 8 H 0.086 0.914 9 C 0.108 3.892 10 C -0.177 4.177 11 C -0.011 4.011 12 Cl -0.107 7.107 13 C -0.238 4.238 14 C -0.104 4.104 15 C -0.036 4.036 16 N -0.486 5.486 17 C 0.067 3.933 18 C -0.111 4.111 19 C -0.112 4.112 20 C -0.111 4.111 21 C 0.063 3.937 22 H 0.289 0.711 23 H 0.112 0.888 24 H 0.117 0.883 25 H 0.115 0.885 26 H 0.027 0.973 27 H 0.044 0.956 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.645 -5.385 -3.051 9.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.183 4.183 3 Si 0.799 3.201 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.182 1.182 7 C -0.473 4.473 8 H 0.104 0.896 9 C 0.104 3.896 10 C -0.198 4.198 11 C -0.037 4.037 12 Cl -0.079 7.079 13 C -0.259 4.259 14 C -0.124 4.124 15 C -0.131 4.131 16 N -0.206 5.206 17 C -0.059 4.059 18 C -0.149 4.149 19 C -0.149 4.149 20 C -0.149 4.149 21 C -0.064 4.064 22 H 0.099 0.901 23 H 0.130 0.870 24 H 0.135 0.865 25 H 0.133 0.867 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 6.509 -4.746 -3.052 8.615 hybrid contribution -0.761 0.031 0.399 0.860 sum 5.748 -4.715 -2.653 7.893 Atomic orbital electron populations 1.69900 1.08992 1.30704 1.34718 1.26827 0.95382 1.04616 0.91440 0.85258 0.79244 0.76158 0.79452 1.18786 1.19418 1.18167 1.19651 0.98471 0.90980 1.38235 0.89587 1.17679 0.90344 0.92884 0.88693 1.20901 1.00167 0.96061 1.02651 1.20581 0.90168 0.95658 0.97287 1.98246 1.42814 1.99001 1.67840 1.20286 1.02075 0.95072 1.08466 1.21168 0.95700 0.97474 0.98076 1.18717 0.97783 0.92461 1.04186 1.58784 1.07407 1.52569 1.01877 1.22038 0.97910 0.96561 0.89423 1.21579 0.94548 1.00900 0.97870 1.21534 0.98422 0.99016 0.95958 1.21584 0.95867 1.01782 0.95652 1.22122 0.92217 0.94431 0.97655 0.90072 0.87015 0.86534 0.86689 0.95458 0.93707 0.92265 0.90109 0.89993 0.91813 0.92169 0.89815 0.92896 0.95334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.09 10.96 21.83 0.24 -41.85 16 2 C 0.03 1.63 5.15 85.24 0.44 2.07 16 3 Si 0.98 37.84 29.59 68.60 2.03 39.87 16 4 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 5 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 6 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 7 C -0.44 -23.19 8.69 23.36 0.20 -22.98 16 8 H 0.09 4.45 7.59 -2.91 -0.02 4.43 16 9 C 0.11 5.66 5.58 -21.17 -0.12 5.54 16 10 C -0.18 -9.25 8.39 22.48 0.19 -9.06 16 11 C -0.01 -0.50 6.27 22.06 0.14 -0.36 16 12 Cl -0.11 -4.42 28.93 -2.72 -0.08 -4.50 16 13 C -0.24 -10.45 9.81 22.44 0.22 -10.23 16 14 C -0.10 -4.46 8.68 22.37 0.19 -4.26 16 15 C -0.04 -1.67 4.69 38.98 0.18 -1.49 16 16 N -0.49 -19.61 3.81 -693.75 -2.64 -22.25 16 17 C 0.07 2.39 5.16 86.33 0.45 2.84 16 18 C -0.11 -3.05 6.09 30.65 0.19 -2.86 16 19 C -0.11 -2.57 6.00 30.68 0.18 -2.38 16 20 C -0.11 -2.91 6.09 30.65 0.19 -2.72 16 21 C 0.06 2.11 5.11 86.32 0.44 2.55 16 22 H 0.29 13.53 8.30 -92.71 -0.77 12.76 16 23 H 0.11 6.16 6.18 -2.91 -0.02 6.15 16 24 H 0.12 4.54 8.06 -2.91 -0.02 4.52 16 25 H 0.12 4.34 7.12 -2.91 -0.02 4.32 16 26 H 0.03 0.92 7.55 -2.39 -0.02 0.91 16 27 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.05 1.93 8.10 -2.39 -0.02 1.91 16 35 H 0.03 0.92 7.32 -2.39 -0.02 0.90 16 Total: -1.00 -55.63 297.50 3.51 -52.12 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 1.08 Total: 19.96 kcal Atomic # 6 Polarization: -46.24 SS G_CDS: 2.89 Total: -43.35 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -2.41 Total: -64.11 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Atomic # 17 Polarization: -4.42 SS G_CDS: -0.08 Total: -4.50 kcal Total: -55.63 3.51 -52.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034521847.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.087 kcal (2) G-P(sol) polarization free energy of solvation -55.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds