Wall clock time and date at job start Mon Mar 30 2020 06:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86802 * 119.99736 * 2 1 4 4 H 1.48498 * 109.47019 * 270.00348 * 3 2 1 5 5 H 1.48495 * 109.46935 * 30.00850 * 3 2 1 6 6 H 1.48502 * 109.46694 * 150.00855 * 3 2 1 7 7 C 1.37870 * 119.99603 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99344 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00471 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47176 * 180.02562 * 9 7 2 11 11 C 1.46897 * 110.99826 * 182.84048 * 10 9 7 12 12 H 1.09001 * 109.47004 * 322.33402 * 11 10 9 13 13 C 1.50695 * 109.47576 * 82.33792 * 11 10 9 14 14 C 1.38248 * 119.98363 * 39.72358 * 13 11 10 15 15 C 1.38214 * 120.00819 * 179.72344 * 14 13 11 16 16 C 1.38352 * 119.98809 * 0.55447 * 15 14 13 17 17 Cl 1.73598 * 120.01092 * 179.70211 * 16 15 14 18 18 C 1.38345 * 119.97413 * 359.71986 * 16 15 14 19 19 C 1.38214 * 119.98670 * 0.02562 * 18 16 15 20 20 C 1.53002 * 109.46953 * 202.34219 * 11 10 9 21 21 C 1.52998 * 117.50105 * 65.24023 * 20 11 10 22 22 C 1.53001 * 60.00115 * 107.49438 * 21 20 11 23 23 H 0.97001 * 119.99607 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47188 * 60.00060 * 9 7 2 25 25 H 1.08998 * 109.46692 * 299.99719 * 9 7 2 26 26 H 1.00897 * 110.99509 * 306.79089 * 10 9 7 27 27 H 1.07995 * 119.99194 * 0.02562 * 14 13 11 28 28 H 1.08006 * 120.00515 * 180.27236 * 15 14 13 29 29 H 1.08004 * 120.00985 * 179.97438 * 18 16 15 30 30 H 1.08004 * 119.99668 * 179.97438 * 19 18 16 31 31 H 1.09007 * 115.55455 * 279.55374 * 20 11 10 32 32 H 1.09000 * 117.49985 * 0.02562 * 21 20 11 33 33 H 1.09007 * 117.49532 * 214.98258 * 21 20 11 34 34 H 1.08996 * 117.50184 * 107.48526 * 22 21 20 35 35 H 1.09001 * 117.49593 * 252.49543 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5066 -4.9059 -0.0685 12 1 0.5952 -4.8572 0.5274 13 6 1.1541 -5.2115 -1.5014 14 6 2.0515 -4.9181 -2.5113 15 6 1.7310 -5.2035 -3.8252 16 6 0.5074 -5.7721 -4.1307 17 17 0.1011 -6.1236 -5.7815 18 6 -0.3925 -6.0602 -3.1202 19 6 -0.0689 -5.7793 -1.8062 20 6 2.4157 -6.0080 0.4793 21 6 2.7872 -5.9453 1.9622 22 6 1.8024 -7.0052 1.4643 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8902 25 1 0.6248 -2.5570 0.8897 26 1 2.8694 -3.5239 -0.7549 27 1 3.0050 -4.4705 -2.2731 28 1 2.4339 -4.9783 -4.6137 29 1 -1.3481 -6.5038 -3.3581 30 1 -0.7714 -6.0038 -1.0172 31 1 3.1695 -6.3831 -0.2130 32 1 2.3836 -5.1192 2.5477 33 1 3.7854 -6.2793 2.2455 34 1 2.1527 -8.0364 1.4201 35 1 0.7513 -6.8763 1.7225 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034990533.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:31 Heat of formation + Delta-G solvation = 20.124174 kcal Electronic energy + Delta-G solvation = -17394.414567 eV Core-core repulsion = 14610.771086 eV Total energy + Delta-G solvation = -2783.643481 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.81056 -38.59783 -37.33539 -36.25056 -34.45476 -32.12123 -31.79252 -28.86435 -26.37630 -24.27240 -23.35917 -22.95593 -22.72940 -21.01562 -18.68468 -18.23272 -16.96603 -16.73107 -16.34214 -16.11886 -15.58894 -15.19740 -14.84019 -14.43566 -14.32143 -14.30171 -13.85908 -13.39916 -12.91526 -12.81098 -12.66117 -12.46046 -12.41925 -12.27642 -12.17002 -11.87745 -11.71227 -11.34579 -11.07508 -10.85730 -10.65714 -10.01853 -9.54455 -9.12115 -8.21769 -6.32426 0.14683 0.31671 1.12130 1.41120 1.42317 1.53963 2.39763 2.62840 2.95669 3.12245 3.57630 3.73817 3.80025 3.92340 4.10650 4.24502 4.31910 4.37156 4.40486 4.57375 4.72859 4.74025 4.88457 4.96125 5.11776 5.13961 5.21712 5.22062 5.33193 5.35563 5.42317 5.52373 5.64694 5.81395 6.03410 6.44666 6.72634 6.91041 7.38505 8.89711 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.013618 B = 0.006023 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.646415 B = 4647.889740 C = 6174.521309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.533 4.533 8 H 0.065 0.935 9 C 0.216 3.784 10 N -0.671 5.671 11 C 0.155 3.845 12 H 0.065 0.935 13 C -0.101 4.101 14 C -0.112 4.112 15 C -0.111 4.111 16 C -0.049 4.049 17 Cl -0.070 7.070 18 C -0.111 4.111 19 C -0.109 4.109 20 C -0.141 4.141 21 C -0.164 4.164 22 C -0.165 4.165 23 H 0.264 0.736 24 H -0.040 1.040 25 H -0.004 1.004 26 H 0.335 0.665 27 H 0.135 0.865 28 H 0.147 0.853 29 H 0.150 0.850 30 H 0.140 0.860 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.113 0.887 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.500 -15.187 -5.293 16.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.572 4.572 8 H 0.083 0.917 9 C 0.088 3.912 10 N -0.301 5.301 11 C 0.044 3.956 12 H 0.083 0.917 13 C -0.103 4.103 14 C -0.131 4.131 15 C -0.129 4.129 16 C -0.076 4.076 17 Cl -0.041 7.041 18 C -0.129 4.129 19 C -0.128 4.128 20 C -0.160 4.160 21 C -0.202 4.202 22 C -0.202 4.202 23 H 0.073 0.927 24 H -0.022 1.022 25 H 0.014 0.986 26 H 0.155 0.845 27 H 0.152 0.848 28 H 0.165 0.835 29 H 0.168 0.832 30 H 0.158 0.842 31 H 0.125 0.875 32 H 0.095 0.905 33 H 0.123 0.877 34 H 0.131 0.869 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.389 -15.093 -4.733 15.997 hybrid contribution -0.356 1.127 -1.050 1.580 sum 2.033 -13.966 -5.783 15.252 Atomic orbital electron populations 1.70097 1.07787 1.27859 1.51615 1.25907 0.95709 1.03247 0.94672 0.85387 0.78624 0.78241 0.78394 1.19854 1.20859 1.18739 1.21539 0.93772 0.91448 1.50413 0.91720 1.19129 0.90561 0.88638 0.92889 1.60752 1.17816 1.00544 1.50963 1.20132 0.95814 0.89434 0.90188 0.91725 1.20933 0.94854 0.97274 0.97234 1.21051 1.00342 0.99617 0.92058 1.21184 0.95878 0.98674 0.97175 1.21009 0.96551 1.04237 0.85788 1.98347 1.93773 1.93677 1.18339 1.21236 0.99832 1.00386 0.91468 1.21209 0.96372 0.98622 0.96586 1.22054 1.02080 0.98634 0.93233 1.22768 1.00496 1.00855 0.96050 1.23058 0.98878 0.95830 1.02484 0.92741 1.02195 0.98623 0.84518 0.84750 0.83497 0.83184 0.84180 0.87515 0.90497 0.87713 0.86896 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.55 13.29 21.45 0.28 -56.26 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.97 44.26 29.54 68.60 2.03 46.29 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 6 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 7 C -0.53 -30.15 9.29 25.60 0.24 -29.92 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.51 16 9 C 0.22 11.40 5.24 85.56 0.45 11.85 16 10 N -0.67 -27.83 6.18 -499.47 -3.09 -30.91 16 11 C 0.15 5.26 2.37 44.17 0.10 5.36 16 12 H 0.06 2.39 7.54 -2.39 -0.02 2.37 16 13 C -0.10 -3.20 4.55 -19.86 -0.09 -3.29 16 14 C -0.11 -3.38 9.15 22.27 0.20 -3.17 16 15 C -0.11 -3.02 9.83 22.29 0.22 -2.80 16 16 C -0.05 -1.32 6.32 22.32 0.14 -1.18 16 17 Cl -0.07 -1.65 28.96 -2.72 -0.08 -1.73 16 18 C -0.11 -2.89 9.83 22.29 0.22 -2.68 16 19 C -0.11 -3.13 9.67 22.26 0.22 -2.91 16 20 C -0.14 -3.88 5.29 -10.79 -0.06 -3.93 16 21 C -0.16 -4.35 10.21 30.59 0.31 -4.03 16 22 C -0.17 -3.74 10.18 30.60 0.31 -3.43 16 23 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 24 H -0.04 -2.29 7.85 -2.39 -0.02 -2.31 16 25 H 0.00 -0.25 8.11 -2.39 -0.02 -0.27 16 26 H 0.34 13.25 6.36 -89.70 -0.57 12.68 16 27 H 0.13 3.86 6.49 -2.91 -0.02 3.84 16 28 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 29 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 30 H 0.14 3.55 8.04 -2.91 -0.02 3.53 16 31 H 0.11 2.73 8.14 -2.38 -0.02 2.71 16 32 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 34 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.09 2.06 8.08 -2.39 -0.02 2.04 16 Total: -1.00 -63.00 313.95 2.39 -60.62 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: 0.51 Total: 21.51 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 2.73 Total: -39.50 kcal Atomic # 7 Polarization: -84.37 SS G_CDS: -2.80 Total: -87.18 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.08 Total: -1.73 kcal Total: -63.00 2.39 -60.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034990533.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.740 kcal (2) G-P(sol) polarization free energy of solvation -63.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds