Wall clock time and date at job start Mon Mar 30 2020 06:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00295 * 2 1 4 4 H 1.48500 * 109.47281 * 239.99770 * 3 2 1 5 5 H 1.48498 * 109.47037 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46868 * 120.00211 * 3 2 1 7 7 C 1.37881 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99921 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99755 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.46854 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99817 * 174.77434 * 10 9 7 12 12 H 1.09001 * 109.47611 * 326.37751 * 11 10 9 13 13 C 1.50704 * 109.47211 * 206.37388 * 11 10 9 14 14 C 1.38247 * 119.98703 * 319.73030 * 13 11 10 15 15 C 1.38214 * 120.01287 * 179.72609 * 14 13 11 16 16 C 1.38353 * 119.98517 * 0.54690 * 15 14 13 17 17 Cl 1.73596 * 120.01299 * 179.70571 * 16 15 14 18 18 C 1.38352 * 119.97156 * 359.72815 * 16 15 14 19 19 C 1.38210 * 119.99004 * 359.97438 * 18 16 15 20 20 C 1.53003 * 109.47186 * 86.37650 * 11 10 9 21 21 C 1.52998 * 117.49954 * 252.76857 * 20 11 10 22 22 C 1.52994 * 117.50356 * 184.14436 * 20 11 10 23 23 H 0.96994 * 119.99788 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47153 * 60.00510 * 9 7 2 25 25 H 1.08992 * 109.47459 * 299.99774 * 9 7 2 26 26 H 1.00896 * 111.00626 * 298.72905 * 10 9 7 27 27 H 1.08002 * 119.98994 * 359.97438 * 14 13 11 28 28 H 1.07997 * 120.00828 * 180.27172 * 15 14 13 29 29 H 1.08004 * 120.00341 * 180.02562 * 18 16 15 30 30 H 1.08001 * 119.99608 * 179.97438 * 19 18 16 31 31 H 1.09004 * 115.54608 * 38.47343 * 20 11 10 32 32 H 1.09002 * 117.49789 * 359.97438 * 21 20 11 33 33 H 1.09001 * 117.49821 * 145.01233 * 21 20 11 34 34 H 1.09001 * 117.50430 * 214.97989 * 22 20 11 35 35 H 1.09005 * 117.49564 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5095 -4.9033 0.1244 12 1 0.6254 -4.7794 0.7499 13 6 2.4326 -5.9145 0.7541 14 6 3.7668 -5.9507 0.3936 15 6 4.6152 -6.8740 0.9750 16 6 4.1265 -7.7696 1.9095 17 17 5.1898 -8.9347 2.6345 18 6 2.7900 -7.7366 2.2656 19 6 1.9440 -6.8087 1.6881 20 6 1.0881 -5.3920 -1.2629 21 6 -0.3993 -5.3232 -1.6146 22 6 0.2596 -6.6760 -1.3382 23 1 -0.4849 0.8400 -0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.7847 -3.5965 -0.8265 27 1 4.1470 -5.2547 -0.3394 28 1 5.6583 -6.8994 0.6966 29 1 2.4081 -8.4352 2.9954 30 1 0.9006 -6.7831 1.9657 31 1 1.8040 -5.2073 -2.0639 32 1 -1.0778 -4.9301 -0.8574 33 1 -0.6623 -5.0929 -2.6470 34 1 0.4301 -7.3360 -2.1888 35 1 0.0150 -7.1729 -0.3993 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000034990535.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:33 Heat of formation + Delta-G solvation = 34.952664 kcal Electronic energy + Delta-G solvation = -17264.895903 eV Core-core repulsion = 14481.895434 eV Total energy + Delta-G solvation = -2783.000470 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.58999 -37.56671 -36.28712 -34.47605 -32.51573 -30.96599 -30.61302 -27.09629 -24.61565 -22.84605 -22.17927 -21.76732 -21.39927 -19.89373 -17.15404 -16.35877 -15.77789 -15.28448 -14.99890 -14.70560 -14.41717 -13.74657 -13.41254 -13.34266 -12.82682 -12.73604 -12.28821 -11.78527 -11.54728 -11.42333 -11.33561 -11.15976 -10.94618 -10.75819 -10.70369 -10.67570 -10.27602 -10.02106 -9.69027 -9.23425 -8.89107 -8.50339 -8.36629 -7.38042 -6.04312 -4.06112 1.31164 1.44859 2.18568 3.32830 3.36910 3.39990 3.77579 4.02841 4.41260 4.75826 4.94943 4.98259 5.03944 5.12635 5.31728 5.33257 5.39420 5.48492 5.61509 5.77243 5.80597 5.83766 5.91703 6.11004 6.11967 6.31127 6.33345 6.38562 6.45312 6.81662 6.96032 7.19799 7.38648 7.75917 8.09524 8.32612 8.53880 9.02206 9.58661 11.06477 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021002 B = 0.004569 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.889557 B = 6127.074718 C = 7087.645700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.513 4.513 8 H 0.061 0.939 9 C 0.197 3.803 10 N -0.676 5.676 11 C 0.150 3.850 12 H 0.083 0.917 13 C -0.039 4.039 14 C -0.083 4.083 15 C -0.113 4.113 16 C -0.045 4.045 17 Cl -0.087 7.087 18 C -0.112 4.112 19 C -0.108 4.108 20 C -0.170 4.170 21 C -0.171 4.171 22 C -0.180 4.180 23 H 0.262 0.738 24 H -0.007 1.007 25 H 0.026 0.974 26 H 0.330 0.670 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.133 -16.449 0.351 16.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.070 3.930 10 N -0.305 5.305 11 C 0.039 3.961 12 H 0.101 0.899 13 C -0.040 4.040 14 C -0.101 4.101 15 C -0.131 4.131 16 C -0.071 4.071 17 Cl -0.058 7.058 18 C -0.131 4.131 19 C -0.126 4.126 20 C -0.190 4.190 21 C -0.208 4.208 22 C -0.217 4.217 23 H 0.071 0.929 24 H 0.010 0.990 25 H 0.044 0.956 26 H 0.147 0.853 27 H 0.150 0.850 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.120 0.880 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.199 -16.333 1.104 16.900 hybrid contribution 0.093 0.785 -0.803 1.127 sum 4.292 -15.548 0.301 16.133 Atomic orbital electron populations 1.69945 1.06054 1.26882 1.50874 1.24967 0.94854 0.99287 0.95353 0.86562 0.79443 0.82742 0.78652 1.20281 1.21368 1.20178 1.21135 0.93509 0.90185 1.50386 0.92037 1.19577 0.90399 0.87042 0.95953 1.60822 1.24293 1.00596 1.44759 1.20125 0.94619 0.89200 0.92196 0.89921 1.20048 0.94552 0.94665 0.94698 1.20937 0.92795 0.96879 0.99511 1.21017 1.00379 0.95191 0.96549 1.20832 0.91445 0.95180 0.99687 1.98342 1.66046 1.58665 1.82771 1.20911 0.91577 0.99867 1.00759 1.20961 0.99683 0.95134 0.96859 1.23148 0.94726 1.01659 0.99450 1.22958 0.95356 0.99934 1.02503 1.22871 1.05322 0.90811 1.02743 0.92880 0.98963 0.95621 0.85293 0.85024 0.85422 0.85488 0.85560 0.88020 0.88630 0.89089 0.89383 0.89010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -14.22 9.36 -34.44 -0.32 -14.55 16 8 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 9 C 0.20 4.93 5.28 -4.97 -0.03 4.90 16 10 N -0.68 -13.56 5.65 -109.22 -0.62 -14.18 16 11 C 0.15 2.47 2.38 -68.86 -0.16 2.31 16 12 H 0.08 1.46 7.35 -51.93 -0.38 1.08 16 13 C -0.04 -0.57 4.71 -104.62 -0.49 -1.06 16 14 C -0.08 -1.16 9.32 -39.59 -0.37 -1.53 16 15 C -0.11 -1.45 9.83 -39.55 -0.39 -1.84 16 16 C -0.05 -0.57 6.32 -39.50 -0.25 -0.82 16 17 Cl -0.09 -1.00 28.96 -51.86 -1.50 -2.50 16 18 C -0.11 -1.39 9.83 -39.55 -0.39 -1.78 16 19 C -0.11 -1.42 9.52 -39.59 -0.38 -1.80 16 20 C -0.17 -2.50 5.11 -90.62 -0.46 -2.96 16 21 C -0.17 -2.44 10.18 -26.73 -0.27 -2.71 16 22 C -0.18 -2.24 9.98 -26.74 -0.27 -2.51 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H -0.01 -0.20 8.14 -51.93 -0.42 -0.62 16 25 H 0.03 0.70 7.92 -51.93 -0.41 0.29 16 26 H 0.33 6.26 7.81 -39.29 -0.31 5.95 16 27 H 0.13 1.79 7.30 -52.49 -0.38 1.41 16 28 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 30 H 0.13 1.47 8.04 -52.49 -0.42 1.05 16 31 H 0.10 1.48 7.97 -51.93 -0.41 1.07 16 32 H 0.10 1.44 8.07 -51.93 -0.42 1.02 16 33 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.09 7.99 -51.93 -0.41 0.67 16 LS Contribution 315.13 15.07 4.75 4.75 Total: -1.00 -28.89 315.13 -10.34 -39.23 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -4.81 Total: 4.73 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: -3.88 Total: -22.84 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.12 Total: -39.84 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.50 Total: -2.50 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.89 -10.34 -39.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034990535.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.185 kcal (2) G-P(sol) polarization free energy of solvation -28.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds