Wall clock time and date at job start Mon Mar 30 2020 06:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00295 * 2 1 4 4 H 1.48500 * 109.47281 * 239.99770 * 3 2 1 5 5 H 1.48498 * 109.47037 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46868 * 120.00211 * 3 2 1 7 7 C 1.37881 * 119.99828 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99921 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99755 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.46854 * 180.02562 * 9 7 2 11 11 C 1.46900 * 110.99817 * 174.77434 * 10 9 7 12 12 H 1.09001 * 109.47611 * 326.37751 * 11 10 9 13 13 C 1.50704 * 109.47211 * 206.37388 * 11 10 9 14 14 C 1.38247 * 119.98703 * 319.73030 * 13 11 10 15 15 C 1.38214 * 120.01287 * 179.72609 * 14 13 11 16 16 C 1.38353 * 119.98517 * 0.54690 * 15 14 13 17 17 Cl 1.73596 * 120.01299 * 179.70571 * 16 15 14 18 18 C 1.38352 * 119.97156 * 359.72815 * 16 15 14 19 19 C 1.38210 * 119.99004 * 359.97438 * 18 16 15 20 20 C 1.53003 * 109.47186 * 86.37650 * 11 10 9 21 21 C 1.52998 * 117.49954 * 252.76857 * 20 11 10 22 22 C 1.52994 * 117.50356 * 184.14436 * 20 11 10 23 23 H 0.96994 * 119.99788 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.47153 * 60.00510 * 9 7 2 25 25 H 1.08992 * 109.47459 * 299.99774 * 9 7 2 26 26 H 1.00896 * 111.00626 * 298.72905 * 10 9 7 27 27 H 1.08002 * 119.98994 * 359.97438 * 14 13 11 28 28 H 1.07997 * 120.00828 * 180.27172 * 15 14 13 29 29 H 1.08004 * 120.00341 * 180.02562 * 18 16 15 30 30 H 1.08001 * 119.99608 * 179.97438 * 19 18 16 31 31 H 1.09004 * 115.54608 * 38.47343 * 20 11 10 32 32 H 1.09002 * 117.49789 * 359.97438 * 21 20 11 33 33 H 1.09001 * 117.49821 * 145.01233 * 21 20 11 34 34 H 1.09001 * 117.50430 * 214.97989 * 22 20 11 35 35 H 1.09005 * 117.49564 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5095 -4.9033 0.1244 12 1 0.6254 -4.7794 0.7499 13 6 2.4326 -5.9145 0.7541 14 6 3.7668 -5.9507 0.3936 15 6 4.6152 -6.8740 0.9750 16 6 4.1265 -7.7696 1.9095 17 17 5.1898 -8.9347 2.6345 18 6 2.7900 -7.7366 2.2656 19 6 1.9440 -6.8087 1.6881 20 6 1.0881 -5.3920 -1.2629 21 6 -0.3993 -5.3232 -1.6146 22 6 0.2596 -6.6760 -1.3382 23 1 -0.4849 0.8400 -0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6246 -2.5571 0.8896 26 1 2.7847 -3.5965 -0.8265 27 1 4.1470 -5.2547 -0.3394 28 1 5.6583 -6.8994 0.6966 29 1 2.4081 -8.4352 2.9954 30 1 0.9006 -6.7831 1.9657 31 1 1.8040 -5.2073 -2.0639 32 1 -1.0778 -4.9301 -0.8574 33 1 -0.6623 -5.0929 -2.6470 34 1 0.4301 -7.3360 -2.1888 35 1 0.0150 -7.1729 -0.3993 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034990535.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:33 Heat of formation + Delta-G solvation = 19.923338 kcal Electronic energy + Delta-G solvation = -17265.547624 eV Core-core repulsion = 14481.895434 eV Total energy + Delta-G solvation = -2783.652190 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.093 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.71224 -38.72376 -37.26118 -36.12724 -34.40281 -32.06952 -31.88870 -28.84251 -26.19960 -24.09004 -23.27736 -23.14842 -22.84425 -21.12505 -18.65571 -17.94948 -17.00469 -16.76800 -16.26757 -16.21050 -15.75154 -14.96813 -14.63166 -14.36257 -14.24768 -14.22399 -14.09460 -13.24583 -12.93263 -12.79666 -12.69106 -12.40516 -12.40364 -12.31565 -12.11291 -11.95096 -11.67863 -11.40460 -11.34135 -10.85799 -10.62136 -9.90369 -9.45015 -9.06785 -8.19417 -6.29871 0.25723 0.43250 1.21118 1.42198 1.45119 1.52925 2.41329 2.71528 2.90732 3.13854 3.46078 3.82711 3.92273 3.96671 4.04367 4.12076 4.18482 4.43782 4.48230 4.55972 4.74216 4.76643 4.80721 5.00215 5.08399 5.12066 5.20985 5.24395 5.30176 5.32430 5.39284 5.62255 5.73399 5.91479 6.06589 6.48581 6.73475 6.91265 7.40634 8.91205 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.021002 B = 0.004569 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.889557 B = 6127.074718 C = 7087.645700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.533 4.533 8 H 0.063 0.937 9 C 0.216 3.784 10 N -0.675 5.675 11 C 0.155 3.845 12 H 0.064 0.936 13 C -0.054 4.054 14 C -0.093 4.093 15 C -0.113 4.113 16 C -0.050 4.050 17 Cl -0.074 7.074 18 C -0.109 4.109 19 C -0.111 4.111 20 C -0.183 4.183 21 C -0.186 4.186 22 C -0.149 4.149 23 H 0.264 0.736 24 H -0.030 1.030 25 H -0.005 1.005 26 H 0.336 0.664 27 H 0.131 0.869 28 H 0.144 0.856 29 H 0.149 0.851 30 H 0.138 0.862 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.383 -17.524 0.472 18.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.194 4.194 3 Si 0.793 3.207 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.572 4.572 8 H 0.081 0.919 9 C 0.088 3.912 10 N -0.305 5.305 11 C 0.045 3.955 12 H 0.082 0.918 13 C -0.055 4.055 14 C -0.111 4.111 15 C -0.132 4.132 16 C -0.076 4.076 17 Cl -0.046 7.046 18 C -0.128 4.128 19 C -0.130 4.130 20 C -0.203 4.203 21 C -0.223 4.223 22 C -0.186 4.186 23 H 0.073 0.927 24 H -0.013 1.013 25 H 0.013 0.987 26 H 0.154 0.846 27 H 0.148 0.852 28 H 0.162 0.838 29 H 0.167 0.833 30 H 0.156 0.844 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.127 0.873 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.464 -17.437 1.221 18.314 hybrid contribution -0.284 1.022 -0.803 1.330 sum 5.180 -16.416 0.418 17.219 Atomic orbital electron populations 1.70075 1.07688 1.27900 1.51668 1.25877 0.95710 1.03108 0.94750 0.85460 0.78166 0.78045 0.79069 1.19100 1.20920 1.19588 1.21526 0.93787 0.91516 1.50336 0.91909 1.19141 0.90328 0.88401 0.93292 1.60669 1.23566 1.01026 1.45195 1.20021 0.94207 0.88040 0.93245 0.91814 1.19903 0.94609 0.95056 0.95901 1.20981 0.92728 0.97471 0.99964 1.21184 1.01045 0.94694 0.96275 1.20993 0.91901 0.95248 0.99472 1.98349 1.65648 1.58067 1.82492 1.21147 0.91326 0.99683 1.00640 1.21110 1.00577 0.94942 0.96337 1.23033 0.94910 1.04061 0.98316 1.22980 0.94896 1.02033 1.02378 1.22934 1.02040 0.89796 1.03841 0.92734 1.01257 0.98734 0.84566 0.85160 0.83772 0.83288 0.84377 0.87858 0.90175 0.88570 0.87325 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.95 13.29 21.45 0.28 -55.67 16 2 C 0.00 0.21 5.46 84.66 0.46 0.68 16 3 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 7 C -0.53 -30.07 9.36 25.60 0.24 -29.83 16 8 H 0.06 3.44 7.81 -2.91 -0.02 3.42 16 9 C 0.22 11.28 5.28 85.56 0.45 11.73 16 10 N -0.68 -27.80 5.65 -499.45 -2.82 -30.63 16 11 C 0.16 5.22 2.38 44.17 0.11 5.33 16 12 H 0.06 2.36 7.35 -2.39 -0.02 2.34 16 13 C -0.05 -1.55 4.71 -19.86 -0.09 -1.65 16 14 C -0.09 -2.52 9.32 22.27 0.21 -2.32 16 15 C -0.11 -2.72 9.83 22.29 0.22 -2.50 16 16 C -0.05 -1.15 6.32 22.32 0.14 -1.01 16 17 Cl -0.07 -1.54 28.96 -2.72 -0.08 -1.62 16 18 C -0.11 -2.45 9.83 22.29 0.22 -2.23 16 19 C -0.11 -2.77 9.52 22.26 0.21 -2.56 16 20 C -0.18 -5.38 5.11 -10.80 -0.06 -5.44 16 21 C -0.19 -5.36 10.18 30.59 0.31 -5.05 16 22 C -0.15 -3.48 9.98 30.59 0.31 -3.17 16 23 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 24 H -0.03 -1.69 8.14 -2.39 -0.02 -1.71 16 25 H -0.01 -0.32 7.92 -2.39 -0.02 -0.33 16 26 H 0.34 13.00 7.81 -89.70 -0.70 12.30 16 27 H 0.13 3.48 7.30 -2.91 -0.02 3.46 16 28 H 0.14 2.90 8.06 -2.91 -0.02 2.87 16 29 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 30 H 0.14 3.03 8.04 -2.91 -0.02 3.01 16 31 H 0.10 2.99 7.97 -2.38 -0.02 2.97 16 32 H 0.08 2.53 8.07 -2.39 -0.02 2.51 16 33 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 34 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.10 2.19 7.99 -2.38 -0.02 2.17 16 Total: -1.00 -61.92 315.13 2.52 -59.40 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.38 Total: 20.37 kcal Atomic # 6 Polarization: -40.74 SS G_CDS: 2.73 Total: -38.02 kcal Atomic # 7 Polarization: -83.76 SS G_CDS: -2.54 Total: -86.29 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -61.92 2.52 -59.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034990535.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.328 kcal (2) G-P(sol) polarization free energy of solvation -61.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds