Wall clock time and date at job start Mon Mar 30 2020 07:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.30907 * 125.08927 * 2 1 4 4 N 1.37484 * 116.32115 * 179.85390 * 3 2 1 5 5 C 1.35149 * 113.93645 * 0.43249 * 4 3 2 6 6 N 1.32356 * 108.82474 * 179.76076 * 5 4 3 7 7 C 1.33867 * 109.13534 * 359.97438 * 6 5 4 8 8 C 1.50704 * 125.80264 * 179.97438 * 7 6 5 9 9 C 1.34328 * 108.39338 * 0.02562 * 7 6 5 10 10 C 1.50699 * 126.44395 * 180.02562 * 9 7 6 11 11 N 1.46905 * 109.47121 * 269.95764 * 10 9 7 12 12 C 1.46907 * 111.00030 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47144 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00139 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00132 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00093 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99702 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.47138 * 90.00383 * 17 15 13 19 19 H 1.48500 * 109.47164 * 209.99718 * 17 15 13 20 20 H 1.48494 * 109.47641 * 330.00495 * 17 15 13 21 21 S 1.75781 * 125.09165 * 180.30620 * 2 1 3 22 22 H 1.09002 * 109.47152 * 179.71762 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.71862 * 1 2 3 24 24 H 1.09004 * 109.47113 * 299.71843 * 1 2 3 25 25 H 1.08005 * 121.84140 * 0.02562 * 3 2 1 26 26 H 1.08995 * 109.47262 * 270.02691 * 8 7 6 27 27 H 1.09004 * 109.47187 * 30.03425 * 8 7 6 28 28 H 1.09005 * 109.46916 * 150.03035 * 8 7 6 29 29 H 1.09007 * 109.47113 * 29.95632 * 10 9 7 30 30 H 1.08998 * 109.47497 * 149.95410 * 10 9 7 31 31 H 1.00897 * 110.99988 * 56.04306 * 11 10 9 32 32 H 1.09001 * 109.47024 * 299.99967 * 12 11 10 33 33 H 1.09004 * 109.46666 * 59.99745 * 12 11 10 34 34 H 0.96999 * 120.00085 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2596 1.0712 0.0000 4 7 3.6183 0.8616 0.0031 5 6 3.9720 -0.4428 -0.0035 6 7 5.2928 -0.5272 -0.0050 7 6 5.8114 0.7070 0.0001 8 6 7.2797 1.0463 0.0009 9 6 4.8004 1.5915 0.0054 10 6 4.9250 3.0933 0.0117 11 7 4.9665 3.5754 1.3987 12 6 5.0885 5.0387 1.4440 13 6 5.1286 5.4953 2.8796 14 1 5.0690 4.7709 3.6785 15 6 5.2404 6.8377 3.1732 16 7 5.2749 7.2362 4.4261 17 14 5.3428 8.0906 1.7915 18 1 3.9746 8.5385 1.4270 19 1 6.1426 9.2585 2.2405 20 1 5.9923 7.4711 0.6085 21 16 2.5176 -1.4383 -0.0077 22 1 -0.3633 -1.0277 -0.0051 23 1 -0.3633 0.5182 -0.8875 24 1 -0.3633 0.5095 0.8925 25 1 1.8363 2.0648 0.0004 26 1 7.6343 1.1232 1.0287 27 1 7.8339 0.2635 -0.5170 28 1 7.4330 1.9977 -0.5085 29 1 5.8416 3.3840 -0.5017 30 1 4.0677 3.5312 -0.4997 31 1 5.7146 3.1345 1.9126 32 1 6.0064 5.3425 0.9408 33 1 4.2326 5.4903 0.9424 34 1 5.3539 8.1806 4.6326 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036822508.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:30 Heat of formation + Delta-G solvation = 89.572582 kcal Electronic energy + Delta-G solvation = -17288.796822 eV Core-core repulsion = 14542.501307 eV Total energy + Delta-G solvation = -2746.295515 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.58658 -37.13533 -35.67323 -32.72154 -32.61862 -31.02802 -29.01444 -27.47316 -25.70158 -24.32157 -23.03608 -21.21963 -20.00988 -19.62723 -18.08918 -16.85081 -16.14406 -16.04423 -14.96952 -14.54821 -14.21341 -13.97879 -13.93932 -13.61738 -13.35656 -12.99574 -12.80266 -12.58046 -12.42168 -12.18119 -11.86263 -11.62511 -11.23124 -11.14932 -10.76209 -10.71151 -10.22134 -10.00310 -9.89992 -9.38532 -8.65769 -8.53337 -7.72104 -7.50110 -6.11846 -4.10837 0.86287 0.91319 1.54535 2.25915 2.60987 2.89853 3.23141 3.31042 3.31968 4.35422 4.35540 4.70808 4.76563 4.93752 4.99942 5.11381 5.20397 5.23535 5.37597 5.47158 5.51775 5.65906 5.72148 5.85434 5.90559 5.98743 6.33996 6.62264 6.65189 6.89807 6.92836 7.48201 7.74804 7.80728 8.17687 8.56105 8.96042 9.48977 11.01361 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.023453 B = 0.004754 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.606587 B = 5888.854885 C = 6621.742775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.199 4.199 3 C 0.061 3.939 4 N -0.393 5.393 5 C 0.132 3.868 6 N -0.456 5.456 7 C 0.042 3.958 8 C -0.069 4.069 9 C 0.004 3.996 10 C 0.129 3.871 11 N -0.676 5.676 12 C 0.165 3.835 13 C -0.518 4.518 14 H 0.079 0.921 15 C 0.070 3.930 16 N -0.898 5.898 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.267 1.267 21 S 0.169 5.831 22 H 0.074 0.926 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.181 0.819 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.341 0.659 32 H -0.012 1.012 33 H 0.022 0.978 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.670 -14.293 -12.294 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.318 4.318 3 C -0.067 4.067 4 N -0.071 5.071 5 C -0.234 4.234 6 N -0.180 5.180 7 C -0.089 4.089 8 C -0.127 4.127 9 C -0.110 4.110 10 C -0.002 4.002 11 N -0.308 5.308 12 C 0.037 3.963 13 C -0.556 4.556 14 H 0.097 0.903 15 C -0.132 4.132 16 N -0.537 5.537 17 Si 0.705 3.295 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.192 1.192 21 S 0.417 5.583 22 H 0.093 0.907 23 H 0.100 0.900 24 H 0.102 0.898 25 H 0.198 0.802 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.005 0.995 33 H 0.040 0.960 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.159 -16.120 -12.114 21.398 hybrid contribution 0.724 3.092 -0.776 3.269 sum -6.435 -13.028 -12.890 19.424 Atomic orbital electron populations 1.20252 0.85468 1.03517 1.03732 1.23706 1.01209 0.94640 1.12243 1.20278 0.80329 1.01777 1.04345 1.43524 1.05085 1.07638 1.50821 1.25985 0.97733 0.86696 1.12950 1.70437 1.01857 1.24240 1.21438 1.20528 0.96207 0.87366 1.04809 1.20137 0.87618 1.01778 1.03118 1.21232 0.81737 0.95287 1.12785 1.20300 1.01090 0.85403 0.93366 1.60574 1.52500 1.08824 1.08897 1.20025 0.94615 0.83175 0.98436 1.21014 1.50522 0.93297 0.90815 0.90295 1.24897 0.94654 0.98256 0.95396 1.69894 1.50396 1.15950 1.17446 0.86825 0.78509 0.81336 0.82840 1.20170 1.21092 1.19220 1.84483 0.87522 1.03143 1.83146 0.90707 0.90040 0.89786 0.80247 0.90473 0.90840 0.90834 0.93067 0.90999 0.84141 0.99460 0.96028 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.36 36.01 0.37 -0.10 16 2 C -0.20 -2.12 6.42 -36.00 -0.23 -2.35 16 3 C 0.06 0.79 11.11 -16.71 -0.19 0.61 16 4 N -0.39 -6.29 3.19 -59.60 -0.19 -6.48 16 5 C 0.13 2.15 8.93 -88.71 -0.79 1.36 16 6 N -0.46 -8.05 11.32 -9.77 -0.11 -8.16 16 7 C 0.04 0.69 7.06 -83.08 -0.59 0.11 16 8 C -0.07 -0.90 10.20 36.01 0.37 -0.53 16 9 C 0.00 0.06 6.76 -80.75 -0.55 -0.48 16 10 C 0.13 2.17 6.01 -4.97 -0.03 2.14 16 11 N -0.68 -13.89 6.48 -116.33 -0.75 -14.65 16 12 C 0.16 3.90 4.51 -4.98 -0.02 3.87 16 13 C -0.52 -14.66 9.87 -34.44 -0.34 -15.00 16 14 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 15 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 16 N -0.90 -27.36 13.96 55.43 0.77 -26.59 16 17 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 21 S 0.17 2.01 23.35 -107.50 -2.51 -0.50 16 22 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 23 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.18 2.03 8.06 -52.48 -0.42 1.61 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.87 7.12 -51.93 -0.37 0.50 16 29 H 0.05 0.80 7.13 -51.92 -0.37 0.43 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 31 H 0.34 6.98 8.71 -39.29 -0.34 6.64 16 32 H -0.01 -0.29 7.20 -51.93 -0.37 -0.66 16 33 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 304.23 15.07 4.58 4.58 Total: -1.00 -33.07 304.23 -9.36 -42.43 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -4.40 Total: 1.38 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -2.09 Total: -8.46 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: -0.28 Total: -55.88 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.51 Total: -0.50 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.07 -9.36 -42.43 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036822508.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.005 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds