Wall clock time and date at job start Mon Mar 30 2020 07:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.30907 * 125.08927 * 2 1 4 4 N 1.37484 * 116.32115 * 179.85390 * 3 2 1 5 5 C 1.35149 * 113.93645 * 0.43249 * 4 3 2 6 6 N 1.32356 * 108.82474 * 179.76076 * 5 4 3 7 7 C 1.33867 * 109.13534 * 359.97438 * 6 5 4 8 8 C 1.50704 * 125.80264 * 179.97438 * 7 6 5 9 9 C 1.34328 * 108.39338 * 0.02562 * 7 6 5 10 10 C 1.50699 * 126.44395 * 180.02562 * 9 7 6 11 11 N 1.46905 * 109.47121 * 269.95764 * 10 9 7 12 12 C 1.46907 * 111.00030 * 179.97438 * 11 10 9 13 13 C 1.50694 * 109.47144 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00139 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00132 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00093 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 119.99702 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.47138 * 90.00383 * 17 15 13 19 19 H 1.48500 * 109.47164 * 209.99718 * 17 15 13 20 20 H 1.48494 * 109.47641 * 330.00495 * 17 15 13 21 21 S 1.75781 * 125.09165 * 180.30620 * 2 1 3 22 22 H 1.09002 * 109.47152 * 179.71762 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.71862 * 1 2 3 24 24 H 1.09004 * 109.47113 * 299.71843 * 1 2 3 25 25 H 1.08005 * 121.84140 * 0.02562 * 3 2 1 26 26 H 1.08995 * 109.47262 * 270.02691 * 8 7 6 27 27 H 1.09004 * 109.47187 * 30.03425 * 8 7 6 28 28 H 1.09005 * 109.46916 * 150.03035 * 8 7 6 29 29 H 1.09007 * 109.47113 * 29.95632 * 10 9 7 30 30 H 1.08998 * 109.47497 * 149.95410 * 10 9 7 31 31 H 1.00897 * 110.99988 * 56.04306 * 11 10 9 32 32 H 1.09001 * 109.47024 * 299.99967 * 12 11 10 33 33 H 1.09004 * 109.46666 * 59.99745 * 12 11 10 34 34 H 0.96999 * 120.00085 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2596 1.0712 0.0000 4 7 3.6183 0.8616 0.0031 5 6 3.9720 -0.4428 -0.0035 6 7 5.2928 -0.5272 -0.0050 7 6 5.8114 0.7070 0.0001 8 6 7.2797 1.0463 0.0009 9 6 4.8004 1.5915 0.0054 10 6 4.9250 3.0933 0.0117 11 7 4.9665 3.5754 1.3987 12 6 5.0885 5.0387 1.4440 13 6 5.1286 5.4953 2.8796 14 1 5.0690 4.7709 3.6785 15 6 5.2404 6.8377 3.1732 16 7 5.2749 7.2362 4.4261 17 14 5.3428 8.0906 1.7915 18 1 3.9746 8.5385 1.4270 19 1 6.1426 9.2585 2.2405 20 1 5.9923 7.4711 0.6085 21 16 2.5176 -1.4383 -0.0077 22 1 -0.3633 -1.0277 -0.0051 23 1 -0.3633 0.5182 -0.8875 24 1 -0.3633 0.5095 0.8925 25 1 1.8363 2.0648 0.0004 26 1 7.6343 1.1232 1.0287 27 1 7.8339 0.2635 -0.5170 28 1 7.4330 1.9977 -0.5085 29 1 5.8416 3.3840 -0.5017 30 1 4.0677 3.5312 -0.4997 31 1 5.7146 3.1345 1.9126 32 1 6.0064 5.3425 0.9408 33 1 4.2326 5.4903 0.9424 34 1 5.3539 8.1806 4.6326 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036822508.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:30 Heat of formation + Delta-G solvation = 67.458051 kcal Electronic energy + Delta-G solvation = -17289.755780 eV Core-core repulsion = 14542.501307 eV Total energy + Delta-G solvation = -2747.254473 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.72084 -38.19082 -37.25723 -34.69708 -33.58720 -32.46702 -30.21273 -28.95831 -26.80638 -25.72363 -24.13799 -23.12436 -21.16776 -20.64711 -19.33304 -18.78212 -17.32039 -17.29356 -16.59636 -15.89589 -15.64036 -15.42897 -14.89639 -14.66222 -14.62334 -14.41051 -13.90976 -13.80531 -13.58084 -13.24341 -13.19807 -13.09524 -12.60123 -12.50861 -12.17194 -12.11294 -11.87393 -11.55784 -11.23961 -11.20042 -10.82110 -9.61983 -9.26952 -8.64580 -8.30934 -6.36766 -0.17634 -0.11655 0.58145 1.16816 1.36075 1.37910 1.48817 1.55307 1.69160 2.33705 3.03324 3.26361 3.54734 3.67416 3.87101 4.00866 4.06799 4.21255 4.45089 4.47331 4.73161 4.76674 4.77010 4.78958 4.89479 4.92960 5.03387 5.12886 5.25800 5.48033 5.53151 5.81220 5.88967 6.44783 6.55192 6.63043 6.71565 7.28204 8.85997 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.023453 B = 0.004754 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.606587 B = 5888.854885 C = 6621.742775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.172 4.172 3 C 0.019 3.981 4 N -0.397 5.397 5 C 0.107 3.893 6 N -0.491 5.491 7 C 0.034 3.966 8 C -0.067 4.067 9 C -0.021 4.021 10 C 0.138 3.862 11 N -0.686 5.686 12 C 0.177 3.823 13 C -0.531 4.531 14 H 0.032 0.968 15 C 0.009 3.991 16 N -0.949 5.949 17 Si 0.954 3.046 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.245 1.245 21 S 0.204 5.796 22 H 0.092 0.908 23 H 0.102 0.898 24 H 0.094 0.906 25 H 0.192 0.808 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.337 0.663 32 H -0.003 1.003 33 H 0.029 0.971 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.906 -14.272 -14.513 21.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.291 4.291 3 C -0.108 4.108 4 N -0.074 5.074 5 C -0.259 4.259 6 N -0.216 5.216 7 C -0.098 4.098 8 C -0.125 4.125 9 C -0.136 4.136 10 C 0.009 3.991 11 N -0.318 5.318 12 C 0.049 3.951 13 C -0.569 4.569 14 H 0.050 0.950 15 C -0.189 4.189 16 N -0.589 5.589 17 Si 0.777 3.223 18 H -0.190 1.190 19 H -0.208 1.208 20 H -0.168 1.168 21 S 0.452 5.548 22 H 0.111 0.889 23 H 0.120 0.880 24 H 0.112 0.888 25 H 0.209 0.791 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.155 0.845 32 H 0.015 0.985 33 H 0.047 0.953 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.418 -16.128 -14.350 23.171 hybrid contribution 0.985 2.901 -0.010 3.064 sum -7.433 -13.227 -14.360 20.890 Atomic orbital electron populations 1.20498 0.82294 1.05174 1.05155 1.24317 1.02873 0.93334 1.08536 1.20666 0.79437 1.03235 1.07416 1.43722 1.05983 1.07483 1.50259 1.26745 0.98511 0.87952 1.12659 1.70414 1.02919 1.24976 1.23280 1.21047 0.97544 0.87181 1.03993 1.20225 0.86043 1.02802 1.03431 1.21215 0.82422 0.95179 1.14734 1.20242 1.02189 0.85615 0.91097 1.60452 1.52588 1.07133 1.11605 1.19769 0.95085 0.85070 0.95194 1.21291 1.50405 0.92877 0.92325 0.95003 1.25905 0.93980 1.00709 0.98297 1.70060 1.51879 1.16714 1.20234 0.85620 0.79151 0.77990 0.79574 1.19021 1.20802 1.16849 1.84365 0.85518 1.02936 1.81974 0.88926 0.87968 0.88763 0.79092 0.90484 0.89818 0.89490 0.91342 0.90280 0.84515 0.98540 0.95310 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.36 71.24 0.74 0.02 16 2 C -0.17 -3.26 6.42 25.74 0.17 -3.10 16 3 C 0.02 0.48 11.11 83.86 0.93 1.41 16 4 N -0.40 -12.51 3.19 -342.49 -1.09 -13.61 16 5 C 0.11 3.43 8.93 179.68 1.60 5.03 16 6 N -0.49 -17.44 11.32 -184.83 -2.09 -19.53 16 7 C 0.03 1.12 7.06 41.36 0.29 1.41 16 8 C -0.07 -1.73 10.20 71.24 0.73 -1.00 16 9 C -0.02 -0.69 6.76 40.54 0.27 -0.41 16 10 C 0.14 4.50 6.01 85.56 0.51 5.01 16 11 N -0.69 -28.01 6.48 -521.95 -3.38 -31.39 16 12 C 0.18 8.17 4.51 85.55 0.39 8.56 16 13 C -0.53 -30.56 9.87 25.60 0.25 -30.31 16 14 H 0.03 2.07 8.06 -2.91 -0.02 2.04 16 15 C 0.01 0.50 5.47 84.65 0.46 0.96 16 16 N -0.95 -59.08 13.96 21.45 0.30 -58.78 16 17 Si 0.95 42.80 27.47 68.60 1.88 44.69 16 18 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.25 -10.04 6.54 99.48 0.65 -9.39 16 21 S 0.20 4.52 23.35 -56.49 -1.32 3.20 16 22 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 23 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 25 H 0.19 4.08 8.06 -2.91 -0.02 4.06 16 26 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 28 H 0.09 1.95 7.12 -2.38 -0.02 1.93 16 29 H 0.07 1.99 7.13 -2.38 -0.02 1.98 16 30 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.34 14.04 8.71 -89.70 -0.78 13.25 16 32 H 0.00 -0.14 7.20 -2.39 -0.02 -0.15 16 33 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 34 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -73.13 304.23 0.92 -72.20 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.28 Total: 15.63 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 6.35 Total: -12.41 kcal Atomic # 7 Polarization: -117.04 SS G_CDS: -6.27 Total: -123.30 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.88 Total: 44.69 kcal Atomic # 16 Polarization: 4.52 SS G_CDS: -1.32 Total: 3.20 kcal Total: -73.13 0.92 -72.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036822508.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.660 kcal (2) G-P(sol) polarization free energy of solvation -73.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds