Wall clock time and date at job start Mon Mar 30 2020 06:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21291 * 120.00343 * 2 1 4 4 N 1.34783 * 119.99744 * 179.97438 * 2 1 3 5 5 C 1.40149 * 120.00182 * 184.62816 * 4 2 1 6 6 C 1.38855 * 119.99323 * 213.31494 * 5 4 2 7 7 C 1.38039 * 120.01264 * 180.25357 * 6 5 4 8 8 C 1.38949 * 119.98769 * 359.51556 * 7 6 5 9 9 S 1.76198 * 120.01157 * 180.23033 * 8 7 6 10 10 C 1.81402 * 102.99988 * 84.57599 * 9 8 7 11 11 H 1.09006 * 109.46871 * 305.90996 * 10 9 8 12 12 C 1.52993 * 109.47137 * 65.91669 * 10 9 8 13 13 C 1.50704 * 109.47030 * 185.91513 * 10 9 8 14 14 H 1.08006 * 120.00071 * 359.97438 * 13 10 9 15 15 C 1.37876 * 119.99929 * 179.97438 * 13 10 9 16 16 N 1.31511 * 119.99925 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 119.99943 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.47339 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46741 * 120.00099 * 17 15 13 20 20 H 1.48502 * 109.47255 * 240.00011 * 17 15 13 21 21 C 1.38947 * 119.97959 * 0.50807 * 8 7 6 22 22 C 1.38043 * 119.99174 * 359.72350 * 21 8 7 23 23 H 1.08999 * 109.47351 * 240.00297 * 1 2 3 24 24 H 1.09003 * 109.47095 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47204 * 120.00209 * 1 2 3 26 26 H 0.96997 * 120.00010 * 4.63505 * 4 2 1 27 27 H 1.08005 * 119.99563 * 359.97438 * 6 5 4 28 28 H 1.08003 * 120.00918 * 179.74641 * 7 6 5 29 29 H 1.08995 * 109.47740 * 65.86121 * 12 10 9 30 30 H 1.09005 * 109.46968 * 185.86554 * 12 10 9 31 31 H 1.09007 * 109.46984 * 305.86121 * 12 10 9 32 32 H 0.97007 * 120.00039 * 179.97438 * 16 15 13 33 33 H 1.08005 * 120.00686 * 179.70524 * 21 8 7 34 34 H 1.07998 * 119.99631 * 180.02562 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5789 -1.1693 0.0985 6 6 4.3188 -2.1482 -0.5515 7 6 5.6956 -2.1536 -0.4510 8 6 6.3415 -1.1735 0.2924 9 16 8.0992 -1.1763 0.4161 10 6 8.6152 -0.2950 -1.0831 11 1 8.1690 -0.7712 -1.9562 12 6 8.1520 1.1610 -1.0036 13 6 10.1170 -0.3387 -1.1997 14 1 10.7026 -0.8456 -0.4469 15 6 10.7436 0.2684 -2.2673 16 7 10.0305 0.8852 -3.1842 17 14 12.6052 0.2149 -2.4115 18 1 13.1695 -0.5349 -1.2605 19 1 12.9843 -0.4632 -3.6771 20 1 13.1418 1.5996 -2.4117 21 6 5.6007 -0.1945 0.9431 22 6 4.2237 -0.1926 0.8460 23 1 -0.3634 -0.5138 0.8900 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3634 -0.5139 -0.8900 26 1 1.6982 -2.0059 -0.0670 27 1 3.8169 -2.9081 -1.1321 28 1 6.2708 -2.9174 -0.9533 29 1 8.6776 1.6658 -0.1932 30 1 8.3694 1.6634 -1.9463 31 1 7.0788 1.1911 -0.8150 32 1 10.4713 1.3127 -3.9352 33 1 6.1021 0.5648 1.5250 34 1 3.6478 0.5686 1.3513 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048247728.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:30 Heat of formation + Delta-G solvation = -19.127522 kcal Electronic energy + Delta-G solvation = -17046.935416 eV Core-core repulsion = 14263.633560 eV Total energy + Delta-G solvation = -2783.301856 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.46840 -38.21763 -34.80227 -33.94420 -30.97912 -30.76989 -30.21499 -28.46683 -25.24274 -23.00219 -22.48954 -21.16153 -20.50185 -17.88716 -17.12356 -17.02143 -16.01493 -15.62619 -14.96036 -14.52990 -14.37684 -13.91138 -13.49345 -13.21846 -13.10438 -12.93964 -12.76769 -12.48178 -12.20336 -11.73547 -11.19432 -11.02893 -10.97782 -10.54399 -10.43972 -10.37566 -10.10279 -9.84766 -9.33133 -8.88789 -8.67350 -8.50133 -7.75457 -6.71965 -6.11749 -4.20271 1.25866 1.65477 2.41441 2.73381 2.96627 3.26580 3.34221 3.40287 3.77447 4.21565 4.38270 4.47064 4.88989 5.00133 5.07305 5.18445 5.19979 5.43572 5.64084 5.68442 5.72204 6.15259 6.27783 6.40633 6.59697 6.73877 6.78338 6.89940 6.94743 7.13678 7.24137 7.47551 7.70939 7.88823 7.94202 8.12573 8.79380 9.43030 10.94243 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.038456 B = 0.004138 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.937672 B = 6765.695628 C = 7040.277258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.505 3.495 3 O -0.522 6.522 4 N -0.675 5.675 5 C 0.145 3.855 6 C -0.153 4.153 7 C -0.062 4.062 8 C -0.099 4.099 9 S -0.216 6.216 10 C 0.108 3.892 11 H 0.043 0.957 12 C -0.135 4.135 13 C -0.506 4.506 14 H 0.067 0.933 15 C 0.069 3.931 16 N -0.887 5.887 17 Si 0.905 3.095 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.058 4.058 22 C -0.129 4.129 23 H 0.090 0.910 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.409 0.591 27 H 0.124 0.876 28 H 0.133 0.867 29 H 0.040 0.960 30 H 0.087 0.913 31 H 0.013 0.987 32 H 0.264 0.736 33 H 0.131 0.869 34 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.920 -5.354 5.433 19.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.293 3.707 3 O -0.397 6.397 4 N -0.321 5.321 5 C 0.051 3.949 6 C -0.175 4.175 7 C -0.084 4.084 8 C -0.211 4.211 9 S 0.018 5.982 10 C -0.018 4.018 11 H 0.061 0.939 12 C -0.194 4.194 13 C -0.546 4.546 14 H 0.085 0.915 15 C -0.135 4.135 16 N -0.525 5.525 17 Si 0.732 3.268 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.080 4.080 22 C -0.151 4.151 23 H 0.109 0.891 24 H 0.114 0.886 25 H 0.108 0.892 26 H 0.245 0.755 27 H 0.142 0.858 28 H 0.150 0.850 29 H 0.059 0.941 30 H 0.106 0.894 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.149 0.851 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.849 -4.918 6.094 18.580 hybrid contribution -0.201 0.076 -1.245 1.264 sum -17.050 -4.842 4.849 18.376 Atomic orbital electron populations 1.21922 0.90870 1.05936 1.04424 1.21012 0.90836 0.83298 0.75520 1.90786 1.70524 1.31194 1.47154 1.43658 1.05402 1.09694 1.73314 1.17779 0.82128 0.97607 0.97344 1.20827 0.94088 1.00703 1.01888 1.21442 0.93212 0.97477 0.96232 1.21936 0.99389 0.97892 1.01838 1.85314 0.94735 1.77757 1.40411 1.20971 0.99039 0.93614 0.88217 0.93891 1.22023 0.96002 0.98224 1.03180 1.20707 0.89071 1.35774 1.09016 0.91505 1.24906 0.98802 0.94666 0.95132 1.69915 1.35361 1.35286 1.11969 0.86325 0.84446 0.77894 0.78155 1.19479 1.20826 1.20794 1.21506 0.92738 0.96582 0.97146 1.21081 0.94604 0.99519 0.99849 0.89114 0.88610 0.89186 0.75530 0.85816 0.84960 0.94084 0.89444 0.96770 0.92654 0.85063 0.85009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.32 36.00 0.37 -0.63 16 2 C 0.51 5.67 7.69 -10.98 -0.08 5.58 16 3 O -0.52 -8.54 14.74 5.55 0.08 -8.46 16 4 N -0.67 -6.98 5.35 -9.81 -0.05 -7.03 16 5 C 0.14 2.08 6.29 -83.59 -0.53 1.55 16 6 C -0.15 -2.16 9.95 -39.43 -0.39 -2.55 16 7 C -0.06 -1.06 9.78 -39.39 -0.39 -1.45 16 8 C -0.10 -1.92 5.15 -39.06 -0.20 -2.12 16 9 S -0.22 -4.86 21.01 -107.50 -2.26 -7.12 16 10 C 0.11 2.81 2.73 -27.88 -0.08 2.73 16 11 H 0.04 1.20 8.14 -51.92 -0.42 0.78 16 12 C -0.13 -3.39 8.84 37.15 0.33 -3.06 16 13 C -0.51 -14.09 8.58 -34.44 -0.30 -14.38 16 14 H 0.07 1.87 7.71 -52.48 -0.40 1.47 16 15 C 0.07 1.89 5.30 -17.82 -0.09 1.80 16 16 N -0.89 -25.20 11.39 55.43 0.63 -24.57 16 17 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C -0.06 -1.06 8.98 -39.39 -0.35 -1.41 16 22 C -0.13 -2.11 8.65 -39.42 -0.34 -2.45 16 23 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.10 0.59 8.12 -51.93 -0.42 0.17 16 25 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.41 2.54 8.82 -40.82 -0.36 2.18 16 27 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 28 H 0.13 2.15 8.06 -52.48 -0.42 1.73 16 29 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.09 2.38 6.25 -51.93 -0.32 2.05 16 31 H 0.01 0.32 6.78 -51.92 -0.35 -0.03 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.13 2.31 8.06 -52.48 -0.42 1.88 16 34 H 0.13 2.14 6.39 -52.49 -0.34 1.81 16 LS Contribution 304.75 15.07 4.59 4.59 Total: -1.00 -32.47 304.75 -8.37 -40.83 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -4.29 Total: 1.89 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -2.05 Total: -16.39 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.58 Total: -31.60 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.08 Total: -8.46 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -4.86 SS G_CDS: -2.26 Total: -7.12 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.47 -8.37 -40.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247728.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.707 kcal (2) G-P(sol) polarization free energy of solvation -32.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds