Wall clock time and date at job start Mon Mar 30 2020 06:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21291 * 120.00343 * 2 1 4 4 N 1.34783 * 119.99744 * 179.97438 * 2 1 3 5 5 C 1.40149 * 120.00182 * 184.62816 * 4 2 1 6 6 C 1.38855 * 119.99323 * 213.31494 * 5 4 2 7 7 C 1.38039 * 120.01264 * 180.25357 * 6 5 4 8 8 C 1.38949 * 119.98769 * 359.51556 * 7 6 5 9 9 S 1.76198 * 120.01157 * 180.23033 * 8 7 6 10 10 C 1.81402 * 102.99988 * 84.57599 * 9 8 7 11 11 H 1.09006 * 109.46871 * 305.90996 * 10 9 8 12 12 C 1.52993 * 109.47137 * 65.91669 * 10 9 8 13 13 C 1.50704 * 109.47030 * 185.91513 * 10 9 8 14 14 H 1.08006 * 120.00071 * 359.97438 * 13 10 9 15 15 C 1.37876 * 119.99929 * 179.97438 * 13 10 9 16 16 N 1.31511 * 119.99925 * 359.97438 * 15 13 10 17 17 Si 1.86799 * 119.99943 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.47339 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46741 * 120.00099 * 17 15 13 20 20 H 1.48502 * 109.47255 * 240.00011 * 17 15 13 21 21 C 1.38947 * 119.97959 * 0.50807 * 8 7 6 22 22 C 1.38043 * 119.99174 * 359.72350 * 21 8 7 23 23 H 1.08999 * 109.47351 * 240.00297 * 1 2 3 24 24 H 1.09003 * 109.47095 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.47204 * 120.00209 * 1 2 3 26 26 H 0.96997 * 120.00010 * 4.63505 * 4 2 1 27 27 H 1.08005 * 119.99563 * 359.97438 * 6 5 4 28 28 H 1.08003 * 120.00918 * 179.74641 * 7 6 5 29 29 H 1.08995 * 109.47740 * 65.86121 * 12 10 9 30 30 H 1.09005 * 109.46968 * 185.86554 * 12 10 9 31 31 H 1.09007 * 109.46984 * 305.86121 * 12 10 9 32 32 H 0.97007 * 120.00039 * 179.97438 * 16 15 13 33 33 H 1.08005 * 120.00686 * 179.70524 * 21 8 7 34 34 H 1.07998 * 119.99631 * 180.02562 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5789 -1.1693 0.0985 6 6 4.3188 -2.1482 -0.5515 7 6 5.6956 -2.1536 -0.4510 8 6 6.3415 -1.1735 0.2924 9 16 8.0992 -1.1763 0.4161 10 6 8.6152 -0.2950 -1.0831 11 1 8.1690 -0.7712 -1.9562 12 6 8.1520 1.1610 -1.0036 13 6 10.1170 -0.3387 -1.1997 14 1 10.7026 -0.8456 -0.4469 15 6 10.7436 0.2684 -2.2673 16 7 10.0305 0.8852 -3.1842 17 14 12.6052 0.2149 -2.4115 18 1 13.1695 -0.5349 -1.2605 19 1 12.9843 -0.4632 -3.6771 20 1 13.1418 1.5996 -2.4117 21 6 5.6007 -0.1945 0.9431 22 6 4.2237 -0.1926 0.8460 23 1 -0.3634 -0.5138 0.8900 24 1 -0.3633 1.0277 -0.0005 25 1 -0.3634 -0.5139 -0.8900 26 1 1.6982 -2.0059 -0.0670 27 1 3.8169 -2.9081 -1.1321 28 1 6.2708 -2.9174 -0.9533 29 1 8.6776 1.6658 -0.1932 30 1 8.3694 1.6634 -1.9463 31 1 7.0788 1.1911 -0.8150 32 1 10.4713 1.3127 -3.9352 33 1 6.1021 0.5648 1.5250 34 1 3.6478 0.5686 1.3513 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048247728.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:30 Heat of formation + Delta-G solvation = -39.251316 kcal Electronic energy + Delta-G solvation = -17047.808049 eV Core-core repulsion = 14263.633560 eV Total energy + Delta-G solvation = -2784.174489 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 265.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.50717 -39.41303 -36.07443 -35.84596 -32.42336 -32.05459 -31.74962 -29.43107 -27.36100 -24.21266 -23.80953 -23.13857 -21.51077 -19.10210 -18.71184 -17.95837 -17.87566 -16.88228 -16.58581 -15.82212 -15.51240 -15.46633 -14.96960 -14.76384 -14.45394 -14.09590 -14.04139 -13.71149 -13.31419 -13.07097 -13.01204 -12.87421 -12.52335 -12.36932 -12.31840 -11.89457 -11.70276 -11.23680 -11.07019 -10.71732 -10.48222 -9.98303 -9.12300 -8.52281 -8.21199 -6.38887 -0.06872 0.35944 1.10365 1.41132 1.42532 1.53574 1.56195 2.06073 2.09889 2.39815 2.77105 3.06893 3.72070 3.90814 3.96608 4.36088 4.39797 4.47942 4.56589 4.63445 4.67073 4.82806 4.86712 4.92012 5.00929 5.10007 5.21041 5.34013 5.37751 5.43759 5.58181 5.74927 5.90373 6.03198 6.41185 6.64657 7.11321 7.28394 8.84052 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.038456 B = 0.004138 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.937672 B = 6765.695628 C = 7040.277258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.500 3.500 3 O -0.580 6.580 4 N -0.660 5.660 5 C 0.157 3.843 6 C -0.140 4.140 7 C -0.069 4.069 8 C -0.128 4.128 9 S -0.219 6.219 10 C 0.103 3.897 11 H 0.013 0.987 12 C -0.118 4.118 13 C -0.528 4.528 14 H 0.059 0.941 15 C 0.023 3.977 16 N -0.914 5.914 17 Si 0.971 3.029 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.275 1.275 21 C -0.068 4.068 22 C -0.138 4.138 23 H 0.120 0.880 24 H 0.091 0.909 25 H 0.119 0.881 26 H 0.433 0.567 27 H 0.168 0.832 28 H 0.136 0.864 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.023 0.977 32 H 0.267 0.733 33 H 0.125 0.875 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.023 -6.681 5.353 21.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.291 3.709 3 O -0.459 6.459 4 N -0.307 5.307 5 C 0.062 3.938 6 C -0.162 4.162 7 C -0.090 4.090 8 C -0.240 4.240 9 S 0.015 5.985 10 C -0.024 4.024 11 H 0.031 0.969 12 C -0.177 4.177 13 C -0.567 4.567 14 H 0.077 0.923 15 C -0.178 4.178 16 N -0.552 5.552 17 Si 0.795 3.205 18 H -0.191 1.191 19 H -0.200 1.200 20 H -0.201 1.201 21 C -0.089 4.089 22 C -0.160 4.160 23 H 0.139 0.861 24 H 0.110 0.890 25 H 0.137 0.863 26 H 0.273 0.727 27 H 0.185 0.815 28 H 0.154 0.846 29 H 0.056 0.944 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.143 0.857 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.997 -6.289 6.020 20.896 hybrid contribution 0.231 0.453 -1.193 1.297 sum -18.765 -5.836 4.827 20.236 Atomic orbital electron populations 1.21958 0.86103 1.06644 1.07174 1.22097 0.92955 0.82289 0.73551 1.90776 1.72041 1.33283 1.49752 1.43656 1.03652 1.11066 1.72338 1.17924 0.84289 0.96231 0.95388 1.21155 0.92785 1.01134 1.01082 1.21591 0.94774 0.96924 0.95749 1.21844 0.97020 1.00242 1.04934 1.85084 0.98410 1.77053 1.37922 1.20733 0.98367 0.94042 0.89303 0.96904 1.21810 0.96453 0.97823 1.01654 1.20947 0.90167 1.36283 1.09326 0.92274 1.25750 1.03463 0.94006 0.94597 1.70027 1.37216 1.35604 1.12364 0.85308 0.78749 0.78129 0.78309 1.19138 1.19968 1.20086 1.21463 0.93621 0.96405 0.97417 1.21125 0.93869 1.00386 1.00668 0.86135 0.89043 0.86292 0.72653 0.81463 0.84603 0.94443 0.91713 0.95813 0.92350 0.85716 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 10.32 71.24 0.74 -0.49 16 2 C 0.50 9.90 7.69 87.66 0.67 10.57 16 3 O -0.58 -18.50 14.74 -3.06 -0.05 -18.55 16 4 N -0.66 -11.34 5.35 -303.33 -1.62 -12.96 16 5 C 0.16 4.13 6.29 38.11 0.24 4.37 16 6 C -0.14 -3.55 9.95 22.37 0.22 -3.32 16 7 C -0.07 -2.29 9.78 22.39 0.22 -2.07 16 8 C -0.13 -5.04 5.15 22.61 0.12 -4.92 16 9 S -0.22 -10.13 21.01 -56.49 -1.19 -11.31 16 10 C 0.10 5.54 2.73 29.85 0.08 5.63 16 11 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 12 C -0.12 -6.16 8.84 71.98 0.64 -5.53 16 13 C -0.53 -30.22 8.58 25.60 0.22 -30.00 16 14 H 0.06 3.40 7.71 -2.91 -0.02 3.37 16 15 C 0.02 1.28 5.30 84.65 0.45 1.73 16 16 N -0.91 -52.98 11.39 21.45 0.24 -52.73 16 17 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 21 C -0.07 -2.49 8.98 22.39 0.20 -2.29 16 22 C -0.14 -4.48 8.65 22.38 0.19 -4.28 16 23 H 0.12 0.28 8.14 -2.39 -0.02 0.26 16 24 H 0.09 0.86 8.12 -2.39 -0.02 0.84 16 25 H 0.12 0.30 8.14 -2.38 -0.02 0.28 16 26 H 0.43 3.28 8.82 -92.71 -0.82 2.46 16 27 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 28 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.06 3.66 6.25 -2.38 -0.01 3.65 16 31 H 0.02 1.14 6.78 -2.38 -0.02 1.12 16 32 H 0.27 14.53 8.31 -92.70 -0.77 13.76 16 33 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 34 H 0.13 4.25 6.39 -2.91 -0.02 4.23 16 Total: -1.00 -73.50 304.75 3.70 -69.81 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 0.29 Total: 10.38 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 3.99 Total: -30.61 kcal Atomic # 7 Polarization: -64.32 SS G_CDS: -1.38 Total: -65.70 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.05 Total: -18.55 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Atomic # 16 Polarization: -10.13 SS G_CDS: -1.19 Total: -11.31 kcal Total: -73.50 3.70 -69.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048247728.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.555 kcal (2) G-P(sol) polarization free energy of solvation -73.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds