Wall clock time and date at job start Mon Mar 30 2020 06:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86806 * 119.99726 * 2 1 4 4 H 1.48493 * 109.46815 * 269.99889 * 3 2 1 5 5 H 1.48499 * 109.46871 * 29.99806 * 3 2 1 6 6 H 1.48494 * 109.47088 * 149.99544 * 3 2 1 7 7 C 1.40192 * 120.00253 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99721 * 180.02562 * 7 2 1 9 9 C 1.40308 * 120.00026 * 0.02562 * 7 2 1 10 10 N 1.33302 * 126.54148 * 359.97438 * 9 7 2 11 11 C 1.33500 * 107.23473 * 180.02562 * 10 9 7 12 12 C 1.48051 * 125.68991 * 179.97438 * 11 10 9 13 13 C 1.38468 * 120.35313 * 47.20499 * 12 11 10 14 14 C 1.38979 * 120.67902 * 180.02562 * 13 12 11 15 15 C 1.36266 * 121.14911 * 0.02744 * 14 13 12 16 16 C 1.40543 * 120.07227 * 359.97334 * 15 14 13 17 17 C 1.40576 * 121.17071 * 180.02562 * 16 15 14 18 18 C 1.36135 * 119.65593 * 179.97438 * 17 16 15 19 19 C 1.39301 * 120.95939 * 0.02562 * 18 17 16 20 20 C 1.36241 * 120.93902 * 359.97438 * 19 18 17 21 21 C 1.40205 * 119.68611 * 0.02562 * 20 19 18 22 22 N 1.32172 * 108.61436 * 0.22447 * 11 10 9 23 23 N 1.28848 * 109.18697 * 359.61950 * 22 11 10 24 24 H 0.96998 * 125.98149 * 180.14257 * 23 22 11 25 25 H 0.97000 * 120.00578 * 0.02562 * 1 2 3 26 26 H 1.07992 * 119.66520 * 0.03859 * 13 12 11 27 27 H 1.08000 * 119.42968 * 179.97438 * 14 13 12 28 28 H 1.07993 * 119.96426 * 179.69852 * 15 14 13 29 29 H 1.08006 * 120.17230 * 359.97426 * 17 16 15 30 30 H 1.08002 * 119.51930 * 179.97438 * 18 17 16 31 31 H 1.07999 * 119.53367 * 180.02562 * 19 18 17 32 32 H 1.08000 * 120.15403 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4000 5 1 1.4381 2.6527 0.7000 6 1 3.5382 1.4404 0.7001 7 6 2.0078 -1.2141 0.0005 8 1 3.0878 -1.2140 0.0010 9 6 1.3063 -2.4292 0.0005 10 7 -0.0180 -2.5811 0.0005 11 6 -0.2657 -3.8930 0.0011 12 6 -1.6075 -4.5186 0.0019 13 6 -2.5850 -4.0789 -0.8747 14 6 -3.8470 -4.6611 -0.8794 15 6 -4.1582 -5.6763 -0.0254 16 6 -3.1962 -6.1538 0.8811 17 6 -3.4921 -7.2002 1.7719 18 6 -2.5367 -7.6390 2.6368 19 6 -1.2673 -7.0656 2.6534 20 6 -0.9464 -6.0499 1.8041 21 6 -1.9051 -5.5720 0.8995 22 7 0.8869 -4.5399 0.0064 23 7 1.8518 -3.6860 0.0010 24 1 2.7988 -3.8961 0.0012 25 1 -0.4851 0.8400 -0.0004 26 1 -2.3646 -3.2756 -1.5619 27 1 -4.5945 -4.3020 -1.5714 28 1 -5.1464 -6.1114 -0.0422 29 1 -4.4724 -7.6537 1.7702 30 1 -2.7666 -8.4429 3.3205 31 1 -0.5267 -7.4320 3.3489 32 1 0.0416 -5.6143 1.8281 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071197005.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:16 Heat of formation + Delta-G solvation = 115.314741 kcal Electronic energy + Delta-G solvation = -18568.955804 eV Core-core repulsion = 15688.332601 eV Total energy + Delta-G solvation = -2880.623202 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 265.091 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.04070 -39.70687 -36.00808 -33.74575 -32.91025 -30.97485 -29.97048 -29.62419 -28.41123 -25.78572 -23.37545 -22.46264 -22.16822 -20.72403 -19.29918 -17.53750 -17.05350 -16.37721 -16.18626 -15.64226 -14.78077 -14.33322 -14.05218 -13.77860 -13.33851 -13.08568 -13.01181 -12.74625 -12.29806 -11.76317 -11.53476 -11.30961 -10.94923 -10.86969 -10.59706 -10.54761 -10.31620 -9.92673 -9.63179 -9.52534 -8.58654 -8.20498 -8.15793 -7.94415 -7.17515 -6.61036 -4.65602 0.91765 1.44826 2.40505 2.95630 3.07779 3.10610 3.34769 3.59975 3.90163 4.34015 4.47908 4.66610 4.99960 5.16651 5.23244 5.33296 5.43449 5.49820 5.52574 5.76675 5.81335 5.89799 6.18708 6.34816 6.48289 6.58435 6.64497 6.70918 6.84946 6.91765 7.08233 7.20185 7.27723 7.41924 7.47039 8.00408 8.19119 8.45098 8.74135 9.04707 10.18201 10.33408 Molecular weight = 265.09amu Principal moments of inertia in cm(-1) A = 0.029015 B = 0.005242 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.782879 B = 5340.442137 C = 5881.206006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.083 3.917 3 Si 0.916 3.084 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.456 4.456 8 H 0.085 0.915 9 C 0.361 3.639 10 N -0.513 5.513 11 C 0.195 3.805 12 C 0.056 3.944 13 C -0.098 4.098 14 C -0.105 4.105 15 C -0.126 4.126 16 C -0.049 4.049 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.139 4.139 20 C -0.076 4.076 21 C -0.039 4.039 22 N -0.387 5.387 23 N -0.488 5.488 24 H 0.423 0.577 25 H 0.277 0.723 26 H 0.129 0.871 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.712 -7.652 1.638 9.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.358 5.358 2 C -0.144 4.144 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.498 4.498 8 H 0.103 0.897 9 C 0.109 3.891 10 N -0.246 5.246 11 C -0.084 4.084 12 C 0.054 3.946 13 C -0.119 4.119 14 C -0.123 4.123 15 C -0.145 4.145 16 C -0.049 4.049 17 C -0.138 4.138 18 C -0.135 4.135 19 C -0.157 4.157 20 C -0.094 4.094 21 C -0.040 4.040 22 N -0.226 5.226 23 N -0.207 5.207 24 H 0.264 0.736 25 H 0.088 0.912 26 H 0.147 0.853 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -5.212 -7.987 1.648 9.678 hybrid contribution 1.214 0.878 0.003 1.498 sum -3.998 -7.109 1.651 8.321 Atomic orbital electron populations 1.69970 1.07049 1.28338 1.30437 1.25756 0.94854 1.00594 0.93149 0.86191 0.80106 0.80528 0.79119 1.19460 1.20108 1.18705 1.18236 0.93766 0.87302 1.50513 0.89653 1.21537 0.87829 0.86067 0.93658 1.72403 1.11123 1.11282 1.29795 1.21869 0.90856 0.90050 1.05599 1.17626 0.89980 0.92790 0.94213 1.21164 0.92277 0.99587 0.98857 1.20727 0.96379 0.96283 0.98887 1.20895 0.98452 0.98395 0.96767 1.17968 0.93186 0.96636 0.97087 1.20890 0.99259 0.97118 0.96486 1.20748 0.93735 0.99969 0.99049 1.20788 0.96742 0.98007 1.00203 1.21333 0.99487 0.95305 0.93286 1.18017 0.93399 0.96019 0.96565 1.73940 0.96301 1.20835 1.31497 1.44964 1.07568 1.05039 1.63120 0.73582 0.91214 0.85291 0.86093 0.86110 0.86092 0.86632 0.86575 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -19.57 11.94 55.56 0.66 -18.91 16 2 C 0.08 2.06 5.50 -17.31 -0.10 1.96 16 3 Si 0.92 18.19 29.56 -169.99 -5.03 13.16 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.46 -11.73 9.47 -38.07 -0.36 -12.09 16 8 H 0.09 1.98 7.85 -52.48 -0.41 1.57 16 9 C 0.36 9.69 7.70 -155.71 -1.20 8.49 16 10 N -0.51 -14.45 9.66 -10.48 -0.10 -14.55 16 11 C 0.19 4.98 6.80 -156.63 -1.07 3.91 16 12 C 0.06 1.26 5.91 -104.52 -0.62 0.65 16 13 C -0.10 -1.96 9.74 -39.22 -0.38 -2.34 16 14 C -0.10 -1.67 9.93 -40.02 -0.40 -2.07 16 15 C -0.13 -1.91 9.75 -39.42 -0.38 -2.30 16 16 C -0.05 -0.83 5.74 -106.85 -0.61 -1.45 16 17 C -0.12 -1.71 9.77 -39.46 -0.39 -2.10 16 18 C -0.12 -1.63 9.95 -39.94 -0.40 -2.03 16 19 C -0.14 -2.20 9.95 -39.90 -0.40 -2.60 16 20 C -0.08 -1.47 9.26 -39.56 -0.37 -1.84 16 21 C -0.04 -0.78 5.76 -106.60 -0.61 -1.39 16 22 N -0.39 -9.49 10.69 32.04 0.34 -9.15 16 23 N -0.49 -11.55 7.07 31.13 0.22 -11.33 16 24 H 0.42 8.29 8.96 -190.21 -1.71 6.59 16 25 H 0.28 6.70 8.29 -40.82 -0.34 6.36 16 26 H 0.13 2.64 8.06 -52.49 -0.42 2.22 16 27 H 0.12 1.54 8.06 -52.49 -0.42 1.11 16 28 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 29 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 30 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 32 H 0.14 2.85 6.12 -52.49 -0.32 2.53 16 LS Contribution 285.03 15.07 4.30 4.30 Total: -1.00 -31.00 285.03 -10.99 -41.99 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -4.11 Total: 9.67 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -7.27 Total: -15.17 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 1.12 Total: -53.94 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.00 -10.99 -41.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071197005.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.308 kcal (2) G-P(sol) polarization free energy of solvation -31.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds